Basic Statistics
Measure | Value |
---|---|
Filename | SRR2077236_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4547627 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 7480 | 0.0 | 33.957096 | 1 |
GGTATCA | 3675 | 0.0 | 32.35388 | 1 |
TCAACGC | 9305 | 0.0 | 26.897007 | 4 |
ATCAACG | 9370 | 0.0 | 26.713072 | 3 |
CAACGCA | 9495 | 0.0 | 26.539984 | 5 |
TATCAAC | 9840 | 0.0 | 25.604458 | 2 |
AACGCAG | 9975 | 0.0 | 25.15683 | 6 |
ACGCAGA | 11590 | 0.0 | 21.263973 | 7 |
CGCAGAG | 11790 | 0.0 | 20.81727 | 8 |
AGAGTAC | 11550 | 0.0 | 19.403395 | 11 |
GTACATG | 12195 | 0.0 | 19.047709 | 1 |
TATACCG | 200 | 2.8667273E-8 | 18.986084 | 5 |
TACATGG | 12420 | 0.0 | 18.176615 | 2 |
CAGAGTA | 12795 | 0.0 | 17.857224 | 10 |
GAGTACT | 5895 | 0.0 | 17.663397 | 12 |
GCAGAGT | 13345 | 0.0 | 17.358229 | 9 |
ACATGGG | 12685 | 0.0 | 17.337017 | 3 |
AGTACTT | 6665 | 0.0 | 16.193768 | 13 |
GTCGTAC | 195 | 9.083789E-6 | 15.906423 | 1 |
TGCGCGA | 155 | 4.5467855E-4 | 15.5720625 | 52 |