FastQCFastQC Report
Wed 25 May 2016
SRR2074905_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2074905_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1743685
Sequences flagged as poor quality0
Sequence length60
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTTCATGTGGTGTAAGCATCTGGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGC37630.2158073275849709No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20720.11882880222058456No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18670.10707209157617345No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG7900.046.13752439
CGTGGTA7850.044.71171642
TAGCGTC8050.044.60703736
GTAGCGT8150.044.0597135
AGCGTCG8550.042.62999737
GCGTCGT8500.042.56312638
AGTAGCG9000.040.49849334
TCGTGGT9100.039.75676341
GGTATTC7450.038.7781945
GTCGTGG9800.038.01899340
GGGTAGT9750.037.10737624
GTATTCC8550.033.7891946
GGTAGTC11050.032.985225
TGGTGTA10500.032.65780310
GTAAGCA11400.032.44709414
AAGCATC11650.032.21339416
CTGGGTA11250.032.15972522
TGTAAGC11000.032.15519313
TAAGCAT11250.031.91881415
GTAGTCT11450.031.59707626