FastQCFastQC Report
Wed 25 May 2016
SRR2074904_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2074904_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1532815
Sequences flagged as poor quality0
Sequence length60
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTTCATGTGGTGTAAGCATCTGGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGC20050.1308050873719268No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT17070.1113637327400893No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT16400.10699268992017955No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG4350.044.68895339
TAGCGTC4250.043.83460636
GTAGCGT4400.042.34024435
AGCGTCG4550.042.13120737
GCGTCGT4750.040.3572638
ATTGGCG2800.037.60655221
TAGCGGA2850.036.9467934
CGTGGTA5150.036.1741942
TCGTGGT5350.035.8312141
AGTAGCG5300.035.65981734
ATTTACG2950.034.77911454
GGGTAGT5600.034.7137424
GTCGTGG5700.034.1047340
AGCGGAT3250.034.06100535
TATGCCG3350.032.238343
GGTAGCG3350.032.238332
GTAGCGG3450.030.52126133
TCGTATG4100.030.29220640
CTGGGTA6400.029.53078722
TAAGCAT6800.028.9848415