SRR2074879_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2074879_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1890567
Sequences flagged as poor quality	0
Sequence length	60
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTAGGTCATCTCGTATGCCGTCTTCTGCTTG	16854	0.8914785881695808	Illumina PCR Primer Index 7 (96% over 29bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6738	0.35640101620307557	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5869	0.3104359697381791	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4586	0.24257273082625477	No Hit
ATACACATCTCCGAGCCCACGAGACGTTAGGTCATCTCGTATGCCGTCTTCTGCTTGAAA	4164	0.2202513849019897	Illumina PCR Primer Index 7 (96% over 29bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3718	0.1966605785460129	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3199	0.16920849671024618	No Hit
CATATACACATCTCCGAGCCCACGAGACGTTAGGTCATCTCGTATGCCGTCTTCTGCTTG	2688	0.14217956835171672	Illumina PCR Primer Index 7 (96% over 29bp)
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA	2327	0.1230847676913857	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2255	0.11927638639625043	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1931	0.10213867056814174	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGGTC	25	8.601453E-4	43.19928	39
TATTACG	45	2.0852531E-7	41.999306	43
TCGTATT	170	0.0	41.293427	40
CATATAC	3340	0.0	40.584454	1
ATTACGT	40	4.4713906E-6	40.49933	44
ATTCCGT	105	0.0	38.570786	44
CTCGTAT	8040	0.0	38.11504	39
TCTCGTA	8055	0.0	38.04406	38
CGTCTTC	5785	0.0	37.990723	48
CATCTCG	8305	0.0	37.841633	36
ATATACA	3625	0.0	37.76613	2
ATCTCGT	8105	0.0	37.642803	37
CCGTCAT	1550	0.0	37.62518	47
TCGTATG	8335	0.0	37.57586	40
TGCCGTC	7450	0.0	37.50944	45
AATGCCG	310	0.0	37.45099	43
CGTATGC	8200	0.0	37.3384	41
CGTATGA	1020	0.0	37.32291	41
GCCGTCT	6100	0.0	37.223972	46
GTATGCC	8275	0.0	37.065243	42