Basic Statistics
Measure | Value |
---|---|
Filename | SRR2074846_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1908862 |
Sequences flagged as poor quality | 0 |
Sequence length | 60 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TGTTTCATGTGGTGTAAGCATCTGGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGC | 3046 | 0.15957151433681427 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2103 | 0.11017035280706515 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1976 | 0.10351717410687625 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTAGCGT | 915 | 0.0 | 45.442295 | 35 |
CGTCGTG | 920 | 0.0 | 44.901848 | 39 |
CGTGGTA | 915 | 0.0 | 44.852135 | 42 |
AGTAGCG | 935 | 0.0 | 44.759033 | 34 |
AGCGTCG | 965 | 0.0 | 43.36756 | 37 |
TAGCGTC | 970 | 0.0 | 42.86567 | 36 |
GCGTCGT | 970 | 0.0 | 42.58732 | 38 |
TCGTGGT | 1030 | 0.0 | 40.106506 | 41 |
GGTATTC | 770 | 0.0 | 39.973736 | 45 |
GTCGTGG | 1080 | 0.0 | 38.49972 | 40 |
GTATTCC | 820 | 0.0 | 36.87778 | 46 |
GGGTAGT | 1125 | 0.0 | 35.999737 | 24 |
GGTAGTC | 1175 | 0.0 | 35.157192 | 25 |
GAGTAGC | 1205 | 0.0 | 34.730038 | 33 |
GTTTCAT | 1225 | 0.0 | 33.94439 | 2 |
TAAGCAT | 1215 | 0.0 | 33.55531 | 15 |
GTGTAAG | 1215 | 0.0 | 33.333088 | 12 |
TGGTATT | 1205 | 0.0 | 33.161583 | 44 |
GTAGTCT | 1240 | 0.0 | 32.661053 | 26 |
CTGGGTA | 1210 | 0.0 | 32.578278 | 22 |