FastQCFastQC Report
Wed 25 May 2016
SRR2074842_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2074842_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences671978
Sequences flagged as poor quality0
Sequence length60
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7090.10550940655795278No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATA2050.035.5606328
TATGCCG1900.034.10493543
CCGTCTT1850.032.107847
CGTATGC2200.030.68152241
TCTCGTA2050.030.29238938
CTCGTAT2000.029.69971539
TCGTATG2100.029.57114440
GCCGTCT2300.029.34754446
CGTCGTG653.6954589E-629.07664339
GCATAGG2550.028.5879630
GGCATAG2850.028.42077829
AGACGGC2950.026.54211825
TGCCGTC2550.026.47033345
ATGCCGT2600.025.96128844
CGTCTTC2500.025.91974848
GTATGCC2500.025.91974842
GACGGCA3100.025.2578226
ACGGCAT2900.025.13768627
CATAGGA2950.024.71162831
GGTATCA17350.024.587661