Basic Statistics
Measure | Value |
---|---|
Filename | SRR2074842_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 671978 |
Sequences flagged as poor quality | 0 |
Sequence length | 60 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 709 | 0.10550940655795278 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATA | 205 | 0.0 | 35.56063 | 28 |
TATGCCG | 190 | 0.0 | 34.104935 | 43 |
CCGTCTT | 185 | 0.0 | 32.1078 | 47 |
CGTATGC | 220 | 0.0 | 30.681522 | 41 |
TCTCGTA | 205 | 0.0 | 30.292389 | 38 |
CTCGTAT | 200 | 0.0 | 29.699715 | 39 |
TCGTATG | 210 | 0.0 | 29.571144 | 40 |
GCCGTCT | 230 | 0.0 | 29.347544 | 46 |
CGTCGTG | 65 | 3.6954589E-6 | 29.076643 | 39 |
GCATAGG | 255 | 0.0 | 28.58796 | 30 |
GGCATAG | 285 | 0.0 | 28.420778 | 29 |
AGACGGC | 295 | 0.0 | 26.542118 | 25 |
TGCCGTC | 255 | 0.0 | 26.470333 | 45 |
ATGCCGT | 260 | 0.0 | 25.961288 | 44 |
CGTCTTC | 250 | 0.0 | 25.919748 | 48 |
GTATGCC | 250 | 0.0 | 25.919748 | 42 |
GACGGCA | 310 | 0.0 | 25.25782 | 26 |
ACGGCAT | 290 | 0.0 | 25.137686 | 27 |
CATAGGA | 295 | 0.0 | 24.711628 | 31 |
GGTATCA | 1735 | 0.0 | 24.58766 | 1 |