SRR2074821_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2074821_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2223720
Sequences flagged as poor quality	0
Sequence length	60
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2721	0.12236252765635962	No Hit
TGTTTCATGTGGTGTAAGCATCTGGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGC	2639	0.11867501304121023	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGTCTTCTGCTTG	2350	0.10567877250733007	RNA PCR Primer, Index 39 (96% over 30bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2252	0.10127174284532225	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGTCGT	590	43.93072	38
CGTCGTG	610	42.49037	39
CGTGGTA	615	41.70591	42
ATTGGCG	390	40.1552	21
TATGCCG	720	39.373672	43
AGCGTCG	680	38.51341	37
GTAGCGT	660	38.453247	35
TCGTATG	795	37.696842	40
TAGCGTC	685	37.049843	36
TCGTGGT	680	36.92523	41
AGTAGCG	715	36.628136	34
CTCGTAT	820	36.54755	39
GCCGTCT	625	36.286777	46
ATGCCGT	790	35.88487	44
TCTCGTA	845	35.785774	38
GTCGTGG	740	35.3907	40
CGTATGC	840	35.034534	41
ATTTACG	425	34.94	54
TAGCGGA	465	34.837536	34
CCGTCTT	655	34.624786	47