FastQCFastQC Report
Wed 25 May 2016
SRR2074814_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2074814_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2459786
Sequences flagged as poor quality0
Sequence length60
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTTCATGTGGTGTAAGCATCTGGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGC39390.16013588173930576No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT27720.11269273018059295No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT26230.10663529266367075No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG7650.042.70535339
CGTGGTA7900.041.35391642
GTAGCGT8050.040.58334735
AGCGTCG8650.039.95326237
TATCTCG5200.038.422636
GCGTCGT8650.038.08045238
AGTAGCG8800.037.73816334
TAGCGTC8750.037.33667836
TATGCCG4500.037.1995443
TCTCGTA5350.035.83133338
CTCGTAT5400.034.49957339
GGTATTC7550.033.6161645
TCGTGGT9800.033.61182841
GTCGTGG10850.030.85675840
GTATTCC7800.030.11562246
CTGGGTA11050.029.80958222
GGGTAGT11250.029.7596324
TGGTGTA11750.029.6427910
GACCCTA7400.029.55368626
TAAGCAT12400.028.95931815