FastQCFastQC Report
Wed 25 May 2016
SRR2074804_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2074804_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2801595
Sequences flagged as poor quality0
Sequence length60
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTTCATGTGGTGTAAGCATCTGGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGC61880.22087418060069355No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28960.10336968762437113No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTAGCGT11900.040.61242335
TAGCGTC12300.039.95021436
CGTCGTG12100.039.7180139
AGCGTCG12750.039.3872537
AGTAGCG12700.038.90453334
CGTGGTA12400.038.75709542
GCGTCGT13200.036.61271738
TCGTGGT13700.035.27648541
TATGCCG5000.035.09911743
GGTATTC12200.034.30241845
GTCGTGG15150.032.078440
GGGTAGT15800.031.4422524
CCGTCTT5250.030.85636747
GTGTAAG16200.030.66644312
GTATTCC13350.030.33631746
TAAGCAT16350.029.72561515
GAGTAGC17300.028.87210733
GGTGTAA17550.028.76902211
CTGGGTA17750.028.44435522
GCCGTCT6100.027.88454646