FastQCFastQC Report
Wed 25 May 2016
SRR2074789_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2074789_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences955123
Sequences flagged as poor quality0
Sequence length60
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGTA258.598894E-443.19970745
TAGCGTC2100.038.57116736
CGTGGTA2300.035.2171542
TATGCCG1000.035.09976243
CGTCGTG2400.034.87476339
TCGACGG2950.034.77942729
CTCGACG3000.034.19976828
GTAGCGT2400.033.7497735
ATCGCGT402.117791E-433.7497737
GCGTCGT2450.033.06138
ACTCGAC3250.032.3997827
AGCGTCG2750.031.41796737
GACGGCA3050.030.98339831
GTATACG350.004483388730.858551
CGTCTTA350.00448453730.85693448
GGTATTC2100.030.85693445
CGACGGC3200.030.37479630
CGCCGAC1250.030.23979412
TCGTGGT2950.030.20318641
TATCACG553.9545666E-529.4558892
Produced by FastQC (version 0.11.5)