Basic Statistics
Measure | Value |
---|---|
Filename | SRR2074752_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2141578 |
Sequences flagged as poor quality | 0 |
Sequence length | 60 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TGTTTCATGTGGTGTAAGCATCTGGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGC | 2384 | 0.11131978382295671 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2231 | 0.10417551917324515 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTAGCGT | 630 | 0.0 | 42.428295 | 35 |
CGTCGTG | 615 | 0.0 | 42.146065 | 39 |
AGTAGCG | 665 | 0.0 | 41.413265 | 34 |
CGTGGTA | 645 | 0.0 | 41.02299 | 42 |
TAGCGTC | 660 | 0.0 | 40.09065 | 36 |
GCGTCGT | 685 | 0.0 | 38.627487 | 38 |
AGCGTCG | 715 | 0.0 | 37.76199 | 37 |
TCGTGGT | 720 | 0.0 | 35.999767 | 41 |
CCGTCTT | 440 | 0.0 | 31.908884 | 47 |
GGTATTC | 585 | 0.0 | 31.38441 | 45 |
TATGCCG | 500 | 0.0 | 31.319798 | 43 |
CTCGTAT | 485 | 0.0 | 31.175056 | 39 |
TCGTATG | 505 | 0.0 | 31.009699 | 40 |
GGGTAGT | 865 | 0.0 | 30.901533 | 24 |
GCCGTCT | 490 | 0.0 | 30.856943 | 46 |
TCTCGTA | 530 | 0.0 | 30.56584 | 38 |
GTCGTGG | 885 | 0.0 | 29.89811 | 40 |
GAGTAGC | 950 | 0.0 | 29.273495 | 33 |
CGTATGC | 550 | 0.0 | 28.96345 | 41 |
TGAGTAG | 905 | 0.0 | 28.939041 | 32 |