FastQCFastQC Report
Wed 25 May 2016
SRR2074743_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2074743_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2173429
Sequences flagged as poor quality0
Sequence length60
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTTCATGTGGTGTAAGCATCTGGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGC27590.12694226496471703No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGTCTTCTGCTTG22030.10136056894428114RNA PCR Primer, Index 45 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGGTA6500.038.63017342
GTAGCGT6450.037.6738435
TAGCGTC6600.037.22670436
CGTCGTG6700.037.0740639
AGCGTCG7000.036.64229637
TATGCCG5550.036.48592843
GCGTCGT6900.036.39074738
AGTAGCG7050.035.9994534
TCGTATG6950.032.6325940
CTCGTAT6750.031.99950839
CCGTCTT5750.030.9908347
TCTCGTA7000.030.8566738
GTCGTGG8400.030.53524640
TCGTGGT8350.030.07139441
GCCGTCT6250.029.3755546
ATGCCGT6900.028.95607844
CGTATGC7600.028.77587341
TGCCGTC6900.028.5647845
GTGTAAG9600.028.12521612
ACGTTCA8700.027.93060527