Basic Statistics
Measure | Value |
---|---|
Filename | SRR2049536_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9431861 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 12259 | 0.1299743497068076 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACCTGG | 10005 | 0.0 | 41.948734 | 2 |
TATAACG | 1345 | 0.0 | 39.8352 | 2 |
GTACCTG | 12155 | 0.0 | 35.23391 | 1 |
ATAACGC | 1820 | 0.0 | 32.797607 | 3 |
ACCTGGG | 12610 | 0.0 | 32.651176 | 3 |
TAACGCA | 1785 | 0.0 | 32.125328 | 4 |
GTATCAA | 14545 | 0.0 | 29.638285 | 1 |
GGTATCA | 10195 | 0.0 | 26.698618 | 1 |
ATCAACG | 15635 | 0.0 | 25.973215 | 3 |
GTATAAC | 2805 | 0.0 | 25.80984 | 1 |
TCAACGC | 15855 | 0.0 | 25.584124 | 4 |
CAACGCA | 16470 | 0.0 | 24.942587 | 5 |
AACGCAG | 17650 | 0.0 | 23.697979 | 6 |
GTACATG | 32510 | 0.0 | 23.107729 | 1 |
TATCAAC | 18195 | 0.0 | 22.963293 | 2 |
TACATGG | 33815 | 0.0 | 21.570826 | 2 |
TATCACG | 1580 | 0.0 | 21.417063 | 2 |
ACATGGG | 33810 | 0.0 | 20.671673 | 3 |
CCTGGGG | 14280 | 0.0 | 20.111246 | 4 |
ACGCAGA | 20790 | 0.0 | 19.82722 | 7 |