Basic Statistics
Measure | Value |
---|---|
Filename | SRR2049525_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8139030 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8545 | 0.0 | 42.45908 | 1 |
GTATCAA | 12450 | 0.0 | 36.00569 | 1 |
TCAACGC | 13495 | 0.0 | 31.88505 | 4 |
ATCAACG | 13565 | 0.0 | 31.833664 | 3 |
CAACGCA | 14715 | 0.0 | 29.171762 | 5 |
TATCAAC | 15075 | 0.0 | 28.916534 | 2 |
AACGCAG | 15905 | 0.0 | 26.988777 | 6 |
GTACATG | 25155 | 0.0 | 24.675894 | 1 |
TACATGG | 25600 | 0.0 | 23.62335 | 2 |
ACATGGG | 26230 | 0.0 | 22.197699 | 3 |
ACGCAGA | 19205 | 0.0 | 22.084118 | 7 |
GTGGTAT | 4275 | 0.0 | 21.546303 | 1 |
CGCAGAG | 20040 | 0.0 | 21.267908 | 8 |
GTACCGT | 580 | 0.0 | 18.524488 | 6 |
CATGGGG | 18920 | 0.0 | 18.469856 | 4 |
GCAGAGT | 23055 | 0.0 | 17.367996 | 9 |
GAGTACA | 19300 | 0.0 | 16.810024 | 1 |
TATACCG | 615 | 0.0 | 16.638565 | 5 |
CAGAGTA | 21315 | 0.0 | 15.94139 | 10-11 |
AGAGTAC | 19535 | 0.0 | 15.564223 | 10-11 |