Basic Statistics
Measure | Value |
---|---|
Filename | SRR2049518_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7253973 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 30705 | 0.4232852810452975 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29207 | 0.4026345286920699 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 18394 | 0.25357138770712273 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8027 | 0.11065660156165456 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 15515 | 0.0 | 59.78634 | 1 |
GTATCAA | 27950 | 0.0 | 40.36384 | 1 |
GTGGTAT | 5985 | 0.0 | 33.199825 | 1 |
ATCAACG | 35230 | 0.0 | 31.949215 | 3 |
TCAACGC | 35610 | 0.0 | 31.674349 | 4 |
TATCAAC | 36300 | 0.0 | 30.955824 | 2 |
CAACGCA | 37000 | 0.0 | 30.460562 | 5 |
TGGTATC | 6510 | 0.0 | 29.419012 | 2 |
AACGCAG | 38650 | 0.0 | 29.257254 | 6 |
ACGCAGA | 43920 | 0.0 | 25.61718 | 7 |
CGCAGAG | 44065 | 0.0 | 25.468891 | 8 |
GCAGAGT | 47060 | 0.0 | 23.388613 | 9 |
GTACATG | 22420 | 0.0 | 23.038729 | 1 |
TACATGG | 22775 | 0.0 | 21.7976 | 2 |
GAGTACT | 34275 | 0.0 | 21.643953 | 12-13 |
CAGAGTA | 45635 | 0.0 | 21.37956 | 10-11 |
ACATGGG | 22700 | 0.0 | 20.97811 | 3 |
AGAGTAC | 44270 | 0.0 | 20.541916 | 10-11 |
AGTACTT | 35505 | 0.0 | 19.550615 | 12-13 |
GTACTTT | 37750 | 0.0 | 19.520844 | 14-15 |