Basic Statistics
Measure | Value |
---|---|
Filename | SRR2049465_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8973773 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8995 | 0.0 | 42.714874 | 1 |
GTATCAA | 15360 | 0.0 | 35.914104 | 1 |
TCAACGC | 16555 | 0.0 | 32.3069 | 4 |
ATCAACG | 16595 | 0.0 | 32.144962 | 3 |
CAACGCA | 17945 | 0.0 | 29.883678 | 5 |
AACGCAG | 18875 | 0.0 | 28.511024 | 6 |
TATCAAC | 19105 | 0.0 | 28.241749 | 2 |
ACGCAGA | 21255 | 0.0 | 24.876434 | 7 |
CGCAGAG | 21540 | 0.0 | 24.131369 | 8 |
GTACATG | 25465 | 0.0 | 21.681166 | 1 |
TACATGG | 25660 | 0.0 | 20.532682 | 2 |
GCAGAGT | 24775 | 0.0 | 20.145971 | 9 |
GTGGTAT | 5495 | 0.0 | 19.427477 | 1 |
ACATGGG | 26265 | 0.0 | 18.860687 | 3 |
AGAGTAC | 21685 | 0.0 | 17.869493 | 10-11 |
TGGTATC | 5740 | 0.0 | 16.703789 | 2 |
CAGAGTA | 24065 | 0.0 | 16.629522 | 10-11 |
CATGGGG | 17325 | 0.0 | 15.354136 | 4 |
GAGTACA | 20205 | 0.0 | 14.686852 | 1 |
GAGTACT | 9610 | 0.0 | 13.864203 | 12-13 |