Basic Statistics
Measure | Value |
---|---|
Filename | SRR2049437_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6402531 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20161 | 0.31489109541211124 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20004 | 0.3124389401628825 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10817 | 0.16894881102488998 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 12640 | 0.0 | 60.541645 | 1 |
GTATCAA | 22960 | 0.0 | 39.827374 | 1 |
GTGGTAT | 4845 | 0.0 | 36.232296 | 1 |
ATCAACG | 27810 | 0.0 | 32.503963 | 3 |
TCAACGC | 27950 | 0.0 | 32.341156 | 4 |
TGGTATC | 5215 | 0.0 | 31.818409 | 2 |
TATCAAC | 29000 | 0.0 | 31.267437 | 2 |
CAACGCA | 29305 | 0.0 | 30.82973 | 5 |
AACGCAG | 30445 | 0.0 | 29.747873 | 6 |
ACGCAGA | 34435 | 0.0 | 26.123337 | 7 |
CGCAGAG | 34600 | 0.0 | 25.903679 | 8 |
GCAGAGT | 37645 | 0.0 | 23.583675 | 9 |
GTACATG | 17210 | 0.0 | 22.943615 | 1 |
GAGTACT | 28170 | 0.0 | 22.089605 | 12-13 |
CAGAGTA | 36710 | 0.0 | 21.995083 | 10-11 |
TACATGG | 17495 | 0.0 | 21.333622 | 2 |
ACATGGG | 17640 | 0.0 | 20.49207 | 3 |
GTACTTT | 30545 | 0.0 | 20.272034 | 14-15 |
AGAGTAC | 35490 | 0.0 | 19.970188 | 10-11 |
AGTACTT | 29270 | 0.0 | 18.81879 | 12-13 |