Basic Statistics
Measure | Value |
---|---|
Filename | SRR2049356_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3868144 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3515 | 0.0 | 40.652256 | 1 |
GTATCAA | 6090 | 0.0 | 35.889885 | 1 |
TCAACGC | 6265 | 0.0 | 33.461002 | 4 |
ATCAACG | 6420 | 0.0 | 33.01921 | 3 |
CAACGCA | 6695 | 0.0 | 31.522518 | 5 |
AACGCAG | 7100 | 0.0 | 29.855648 | 6 |
TATCAAC | 7460 | 0.0 | 28.415628 | 2 |
ACGCAGA | 8470 | 0.0 | 24.527153 | 7 |
GTACATG | 10195 | 0.0 | 23.882454 | 1 |
CGCAGAG | 8625 | 0.0 | 23.650425 | 8 |
TACATGG | 10480 | 0.0 | 22.424784 | 2 |
ACATGGG | 10965 | 0.0 | 20.747314 | 3 |
GCAGAGT | 9915 | 0.0 | 19.530474 | 9 |
TACACCG | 490 | 0.0 | 19.184877 | 5 |
GAGTACA | 7800 | 0.0 | 18.620882 | 1 |
AGAGTAC | 8510 | 0.0 | 17.369984 | 10-11 |
ATACCGT | 490 | 0.0 | 17.26572 | 6 |
TAGACTG | 1515 | 0.0 | 17.06378 | 5 |
GTATAGG | 1305 | 0.0 | 16.928703 | 1 |
CATGGGG | 8070 | 0.0 | 16.890776 | 4 |