Basic Statistics
Measure | Value |
---|---|
Filename | SRR2049349_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5597736 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12635 | 0.22571625385691646 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12130 | 0.2166947494487057 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7352 | 0.13133881269141667 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8695 | 0.0 | 56.287052 | 1 |
GTATCAA | 15705 | 0.0 | 41.311264 | 1 |
ATCAACG | 19490 | 0.0 | 32.93816 | 3 |
TCAACGC | 19615 | 0.0 | 32.848053 | 4 |
CAACGCA | 20240 | 0.0 | 31.880165 | 5 |
TATCAAC | 20395 | 0.0 | 31.591791 | 2 |
AACGCAG | 21195 | 0.0 | 30.575884 | 6 |
GTGGTAT | 4095 | 0.0 | 26.29111 | 1 |
ACGCAGA | 24490 | 0.0 | 26.27026 | 7 |
CGCAGAG | 24705 | 0.0 | 25.889347 | 8 |
TGGTATC | 4185 | 0.0 | 23.469906 | 2 |
GTACATG | 13965 | 0.0 | 23.229265 | 1 |
GCAGAGT | 26915 | 0.0 | 23.221691 | 9 |
TACATGG | 13955 | 0.0 | 22.02462 | 2 |
GAGTACT | 19015 | 0.0 | 20.6692 | 12-13 |
CAGAGTA | 26150 | 0.0 | 20.358131 | 10-11 |
ACATGGG | 14480 | 0.0 | 20.34977 | 3 |
AGAGTAC | 24510 | 0.0 | 20.348413 | 10-11 |
AGTACTT | 19850 | 0.0 | 19.25501 | 12-13 |
TAGACCG | 250 | 2.434099E-7 | 18.798382 | 5 |