Basic Statistics
Measure | Value |
---|---|
Filename | SRR2049347_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4935310 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGT | 13368 | 0.27086444417878514 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11263 | 0.22821261481041719 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10743 | 0.21767629591656856 | No Hit |
ATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTT | 6666 | 0.13506750335845163 | RNA PCR Primer, Index 46 (95% over 21bp) |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5905 | 0.11964800590033857 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8250 | 0.0 | 58.294136 | 1 |
GTATCAA | 15040 | 0.0 | 40.572342 | 1 |
GTGGTAT | 3325 | 0.0 | 35.488304 | 1 |
ATCAACG | 18930 | 0.0 | 31.901777 | 3 |
TCAACGC | 18985 | 0.0 | 31.858868 | 4 |
TGGTATC | 3545 | 0.0 | 31.021442 | 2 |
CAACGCA | 19650 | 0.0 | 30.804607 | 5 |
TATCAAC | 19770 | 0.0 | 30.712717 | 2 |
AACGCAG | 20470 | 0.0 | 29.619984 | 6 |
ACGCAGA | 23055 | 0.0 | 25.972456 | 7 |
CGCAGAG | 23175 | 0.0 | 25.71619 | 8 |
GCAGAGT | 25345 | 0.0 | 23.143225 | 9 |
GAGTACT | 17600 | 0.0 | 21.59849 | 12-13 |
GTACATG | 12580 | 0.0 | 20.628214 | 1 |
CAGAGTA | 24910 | 0.0 | 20.507174 | 10-11 |
AGAGTAC | 23705 | 0.0 | 20.497932 | 10-11 |
AGTACTT | 18605 | 0.0 | 19.522024 | 12-13 |
GTACTTT | 19650 | 0.0 | 19.324629 | 14-15 |
TACATGG | 12675 | 0.0 | 19.095087 | 2 |
ACATGGG | 12920 | 0.0 | 17.859997 | 3 |