##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224566_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 896063 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.12147583373044 34.0 33.0 34.0 31.0 34.0 2 33.25343753731602 34.0 33.0 34.0 31.0 34.0 3 33.37402727263596 34.0 34.0 34.0 31.0 34.0 4 36.60391512650338 37.0 37.0 37.0 35.0 37.0 5 36.634332630629764 37.0 37.0 37.0 35.0 37.0 6 36.6660000468717 37.0 37.0 37.0 35.0 37.0 7 36.64331079399551 37.0 37.0 37.0 35.0 37.0 8 36.62237923003182 37.0 37.0 37.0 35.0 37.0 9 38.45845995203462 39.0 39.0 39.0 37.0 39.0 10-11 38.4768610019608 39.0 39.0 39.0 37.0 39.0 12-13 38.47636438509346 39.0 39.0 39.0 37.0 39.0 14-15 40.062532991541886 41.0 40.0 41.0 38.0 41.0 16-17 40.065550636506586 41.0 40.0 41.0 38.0 41.0 18-19 40.05760253464321 41.0 40.0 41.0 38.0 41.0 20-21 40.062636778887196 41.0 40.0 41.0 38.0 41.0 22-23 39.97725606346876 41.0 40.0 41.0 38.0 41.0 24-25 39.94440067272056 41.0 40.0 41.0 38.0 41.0 26-27 39.8848897901152 41.0 40.0 41.0 38.0 41.0 28-29 39.8452486041718 41.0 40.0 41.0 38.0 41.0 30-31 39.77671882445766 41.0 40.0 41.0 38.0 41.0 32-33 39.724534993633256 41.0 40.0 41.0 37.0 41.0 34-35 39.646174431931684 41.0 40.0 41.0 37.0 41.0 36-37 39.542698448658186 41.0 40.0 41.0 37.0 41.0 38-39 39.44374167887749 41.0 40.0 41.0 36.5 41.0 40-41 39.31943289701728 41.0 39.0 41.0 36.0 41.0 42-43 39.22133544181603 41.0 39.0 41.0 35.5 41.0 44-45 38.986157223320234 41.0 39.0 41.0 35.0 41.0 46-47 38.76433744055943 40.0 38.5 41.0 35.0 41.0 48-49 38.67760748965196 40.0 38.0 41.0 35.0 41.0 50-51 38.541704098930545 40.0 38.0 41.0 35.0 41.0 52-53 38.32549218079532 40.0 37.5 41.0 35.0 41.0 54-55 38.14867481415928 40.0 37.0 41.0 34.5 41.0 56-57 37.94026647679907 40.0 36.5 41.0 34.0 41.0 58-59 37.69304613626497 39.5 36.0 41.0 34.0 41.0 60-61 37.442593322121326 39.0 35.0 41.0 34.0 41.0 62-63 37.20938371520752 39.0 35.0 41.0 33.0 41.0 64-65 36.925011969024496 38.5 35.0 41.0 33.0 41.0 66-67 36.61570168615376 37.5 35.0 40.0 33.0 41.0 68-69 36.32026654375865 37.0 35.0 40.0 33.0 41.0 70-71 35.987583462323514 36.5 35.0 39.0 32.0 41.0 72-73 35.64401721753939 36.0 35.0 39.0 32.0 41.0 74-75 35.301530695944365 35.5 35.0 38.5 32.0 40.0 76-77 33.43419826507734 34.5 32.0 36.5 28.5 39.0 78-79 34.736924747478696 35.0 34.5 37.0 31.5 39.0 80-81 34.64995541608124 35.0 35.0 36.5 32.0 39.0 82-83 34.42604314651983 35.0 35.0 36.0 32.0 37.0 84-85 34.21288681710996 35.0 35.0 36.0 32.0 37.0 86-87 34.006942034209644 35.0 34.5 35.5 31.5 37.0 88-89 33.84200720261857 35.0 34.0 35.0 31.0 36.0 90-91 33.698969826898335 35.0 34.0 35.0 31.0 36.0 92-93 33.601804225818945 35.0 34.0 35.0 31.0 36.0 94-95 33.498048128312405 35.0 34.0 35.0 31.0 36.0 96-97 33.44869891960721 35.0 34.0 35.0 31.0 35.0 98-99 33.40143382775541 35.0 34.0 35.0 31.0 35.0 100-101 32.5488682157393 34.5 33.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 3.0 14 18.0 15 64.0 16 168.0 17 295.0 18 583.0 19 939.0 20 1366.0 21 2010.0 22 2702.0 23 2603.0 24 2260.0 25 2548.0 26 3151.0 27 4130.0 28 5148.0 29 5930.0 30 6979.0 31 8021.0 32 10243.0 33 13880.0 34 22448.0 35 42616.0 36 109395.0 37 241270.0 38 324075.0 39 83188.0 40 30.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.918512803721136 18.569881090682372 13.195749586217104 24.31585651937939 2 15.603701971847961 20.07113339129057 39.78068506343862 24.54447957342285 3 19.135596492657324 25.889474289196183 28.812259852264855 26.16266936588164 4 12.415868080704147 17.245774013657524 39.471108616246845 30.867249289391484 5 13.715553482288634 37.834616539238866 34.977897759420934 13.471932219051563 6 30.138505886304866 37.13935292496175 19.45231529479512 13.269825893938261 7 27.388252834901117 31.23351817896733 22.650974317654004 18.727254668477553 8 25.88121594128984 34.522795830203904 20.631473456665436 18.96451477184082 9 26.562306444970947 15.678919897373286 20.004955008743806 37.75381864891196 10-11 25.55417420426912 25.185003732996453 28.520985689622268 20.73983637311216 12-13 26.481787552884118 22.962280553934267 28.213697027999146 22.34223486518247 14-15 23.3609690390073 24.769407954574625 25.648587208711888 26.22103579770619 16-17 23.214104365429662 27.26370802052981 26.396414091419913 23.12577352262062 18-19 23.028737934721107 26.82110521246832 27.5631289317827 22.587027921027875 20-21 24.195389791921254 25.63469876291076 27.19297364559095 22.976937799577037 22-23 23.968001892745182 26.16229173943952 26.609586709714716 23.26011965810058 24-25 23.672745128674418 25.841461509273934 26.95924380063835 23.526549561413297 26-27 23.5134034194902 26.695013615463598 26.84104504263203 22.950537922414178 28-29 23.32360149459615 26.642694201520488 27.116563321681912 22.91714098220145 30-31 23.60792274564116 25.84919642030103 27.101075494418296 23.441805339639508 32-33 23.383701984242126 26.041057518469746 27.396993504899225 23.1782469923889 34-35 23.96161284958411 26.026501374397483 26.789478911954856 23.22240686406355 36-37 23.316252708431335 25.969748154249032 27.151664900571344 23.562334236748285 38-39 23.392998036968383 26.209708469158976 26.750016460896163 23.647277032976476 40-41 23.813671583359653 26.143251088372132 26.86412674108852 23.178950587179695 42-43 23.612346453318573 26.165459348282432 26.985546775170942 23.236647423228053 44-45 23.819603216811082 25.934604603560015 26.75381886101316 23.49197331861575 46-47 23.638044073135045 25.838517641539994 26.512961701272157 24.010476584052807 48-49 23.504009526216908 25.86257405389299 26.93483145816628 23.698584961723824 50-51 23.712953218691098 26.0270762212032 26.60387718274273 23.656093377362975 52-53 23.918351723037333 26.27019528760813 26.090297222405123 23.721155766949423 54-55 23.825668507683055 25.720066557820154 26.58457050452926 23.869694429967538 56-57 23.87010008398461 26.10191434685923 26.27942600286273 23.748559566293434 58-59 24.142067656581446 26.12565591157754 26.392597968069666 23.339678463771353 60-61 23.884006814066627 26.290865980348162 26.25525511445712 23.569872091128094 62-63 23.700230898943488 25.89862543147078 26.676137726923216 23.725005942662513 64-65 23.852898735914774 25.8708372067589 26.414604776673066 23.861659280653257 66-67 23.563075364120603 26.05804502585198 26.247596430161718 24.1312831798657 68-69 23.848769561961603 26.02573702965082 26.505502403290844 23.61999100509674 70-71 24.063709806118545 25.795619281233574 26.480057763795628 23.660613148852256 72-73 23.719035380324822 25.797516469266114 26.579771734799895 23.90367641560917 74-75 23.854963322891358 25.674701443983288 26.55153711290389 23.918798120221457 76-77 23.738631487494427 25.42908654047355 26.371935823529775 24.46034614850225 78-79 23.692816110876112 25.3971301051015 26.459919798301545 24.45013398572084 80-81 23.452728195003488 26.044679463105375 26.374588520481762 24.12800382140938 82-83 23.5558906048073 25.976894249676917 26.612458624145418 23.854756521370362 84-85 23.66740714328362 25.632990325815292 26.782263604095558 23.91733892680553 86-87 23.371738371074354 26.332690893385845 26.424425514723854 23.871145220815947 88-89 23.87633458808142 25.67113026651028 25.995716819018305 24.45681832639 90-91 23.65882756011575 25.878091161000956 26.183147836703448 24.279933442179846 92-93 23.768250669874774 25.849019544384717 26.531672438210258 23.85105734753025 94-95 23.75335216385455 25.720959352188405 26.365947483603275 24.159741000353772 96-97 23.656762973139163 26.025904428594863 26.480838958867846 23.836493639398125 98-99 22.869653138228006 26.31165442608388 26.553322701640397 24.265369734047717 100-101 23.4390529901167 25.927243285498914 26.311295996426377 24.32240772795801 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2.0 1 1.5 2 2.5 3 5.5 4 5.5 5 5.0 6 8.0 7 17.5 8 32.5 9 45.5 10 48.0 11 53.5 12 63.0 13 72.5 14 84.5 15 94.5 16 110.5 17 123.5 18 147.5 19 197.0 20 230.5 21 243.5 22 320.5 23 440.5 24 587.0 25 822.0 26 1173.0 27 1609.5 28 2223.5 29 3121.0 30 4429.5 31 6157.0 32 8400.0 33 10867.5 34 13563.0 35 16453.5 36 18942.5 37 20974.5 38 22885.0 39 24662.5 40 25857.5 41 27069.0 42 28770.0 43 30504.5 44 32106.0 45 33981.5 46 35955.5 47 37328.0 48 38481.0 49 40617.5 50 42942.0 51 41690.0 52 38579.0 53 38295.0 54 38806.0 55 36669.0 56 31030.5 57 26382.0 58 24583.0 59 22567.5 60 18274.0 61 13476.0 62 10524.0 63 7380.5 64 4458.0 65 2827.0 66 2092.5 67 1715.0 68 1270.0 69 840.0 70 531.5 71 344.0 72 243.0 73 204.0 74 156.0 75 101.5 76 72.0 77 47.5 78 28.5 79 15.5 80 7.5 81 5.0 82 3.5 83 1.5 84 1.5 85 1.5 86 0.5 87 0.0 88 0.5 89 0.5 90 0.0 91 0.0 92 0.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.47887257927176996 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 8.92794368253125E-4 22-23 0.0011159929603164064 24-25 3.347978880949219E-4 26-27 0.0025667838087277345 28-29 0.003905975361107422 30-31 0.0011159929603164064 32-33 3.347978880949219E-4 34-35 0.0037943760650757815 36-37 0.002064586976585352 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.009206941922610352 46-47 0.08180228399119259 48-49 0.001060193312300586 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0073097538900724615 58-59 0.04051054445948555 60-61 0.030020210632511327 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 2.789982400791016E-4 78-79 0.008035149314278124 80-81 0.006528558817850977 82-83 0.0010043936642847656 84-85 0.002064586976585352 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0684103684673957 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 896063.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.14259483066355 #Duplication Level Percentage of deduplicated Percentage of total 1 78.09436526324279 48.52986499111543 2 14.047677421314997 17.459182526092768 3 4.075529111069987 7.597918628093899 4 1.601102103875083 3.9798655729452905 5 0.7452628927027892 2.3156284991778855 6 0.3899010951157535 1.4537679466686169 7 0.22133448695237745 0.9628009541314066 8 0.15730574223801042 0.7820309603546783 9 0.08991453613281913 0.5028770329459953 >10 0.46697906525575833 5.47775838982428 >50 0.051989117075723124 2.303837069729499 >100 0.05360267243873344 6.381900489324126 >500 0.004496868379589422 1.8690537811128936 >1k 5.396242055507306E-4 0.38351315848324485 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 1309 0.14608347850541759 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 1106 0.12342882141099454 No Hit GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 1016 0.11338488476814688 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 901 0.10055096572450821 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 5.579964801582032E-5 0.0 20-21 0.0 0.0 0.0 1.6739894404746094E-4 0.0 22-23 0.0 0.0 0.0 2.2319859206328127E-4 0.0 24-25 0.0 0.0 0.0 3.347978880949219E-4 0.0 26-27 0.0 0.0 0.0 6.137961281740235E-4 0.0 28-29 0.0 0.0 0.0 9.485940162689455E-4 0.0 30-31 0.0 0.0 0.0 0.0030131809928542973 0.0 32-33 0.0 0.0 0.0 0.008090948962293947 0.0 34-35 0.0 0.0 0.0 0.014786906724192386 0.0 36-37 0.0 0.0 0.0 0.023547451462676172 0.0 38-39 0.0 0.0 0.0 0.041012741291627935 0.0 40-41 0.0 0.0 0.0 0.06137961281740235 0.0 42-43 0.0 0.0 0.0 0.08314147554357226 0.0 44-45 0.0 0.0 0.0 0.10925571081497618 0.0 46-47 0.0 0.0 0.0 0.13888532391137676 0.0 48-49 0.0 0.0 0.0 0.17158391764864747 0.0 50-51 0.0 0.0 0.0 0.20444991032996562 0.0 52-53 0.0 0.0 0.0 0.2381528977315211 0.0 54-55 0.0 0.0 0.0 0.27643145627037385 0.0 56-57 0.0 0.0 0.0 0.3230241623635838 0.0 58-59 0.0 0.0 0.0 0.3730206469857588 0.0 60-61 0.0 0.0 0.0 0.43077328268213283 0.0 62-63 0.0 0.0 0.0 0.49427328212413635 0.0 64-65 0.0 0.0 0.0 0.5571036857899501 0.0 66-67 0.0 0.0 0.0 0.6265742475696463 0.0 68-69 0.0 0.0 0.0 0.7053633505679846 0.0 70-71 0.0 0.0 0.0 0.7949217856333762 0.0 72-73 0.0 0.0 0.0 0.8983185334066912 0.0 74-75 0.0 0.0 0.0 0.9987021001871521 0.0 76-77 0.0 0.0 0.0 1.1031032416247517 0.0 78-79 0.0 0.0 0.0 1.2290430471964582 0.0 80-81 0.0 0.0 0.0 1.3688211654760882 0.0 82-83 0.0 0.0 0.0 1.5215448020953883 0.0 84-85 0.0 0.0 0.0 1.6749380344908784 0.0 86-87 0.0 0.0 0.0 1.832516240487555 0.0 88-89 0.0 0.0 0.0 2.019166063100474 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 830 0.0 46.52034 1 GTATCAA 1520 0.0 46.10093 1 CCGTGCG 240 0.0 45.50944 9 ACCGTGC 300 0.0 41.15637 8 AAACCGT 270 0.0 38.694023 6 ATCAACG 1830 0.0 36.070206 3 TCAACGC 1930 0.0 34.44734 4 AACCGTG 305 0.0 34.253723 7 CAACGCA 2065 0.0 32.19533 5 AACGCAG 2105 0.0 31.583544 6 ATACCGT 110 2.7378992E-6 30.21971 6 TATCAAC 2280 0.0 29.575932 2 ACGCAGA 2265 0.0 29.562136 7 GTCTAAT 635 0.0 29.27702 1 CGCAGAG 2285 0.0 29.095562 8 TATACCG 100 4.9603615E-5 28.492868 5 TACATGG 3085 0.0 28.015678 2 GTACATG 3190 0.0 27.495594 1 ACATGGG 3130 0.0 26.702583 3 GCAGAGT 2695 0.0 24.845358 9 >>END_MODULE