##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224563_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 987148 Sequences flagged as poor quality 0 Sequence length 101 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.17122153922208 34.0 33.0 34.0 31.0 34.0 2 33.29884373974318 34.0 34.0 34.0 31.0 34.0 3 33.409409733900084 34.0 34.0 34.0 31.0 34.0 4 36.61901761438001 37.0 37.0 37.0 35.0 37.0 5 36.649842779400856 37.0 37.0 37.0 35.0 37.0 6 36.69088525732717 37.0 37.0 37.0 36.0 37.0 7 36.67134917965695 37.0 37.0 37.0 35.0 37.0 8 36.65990611336902 37.0 37.0 37.0 35.0 37.0 9 38.5043336966696 39.0 39.0 39.0 37.0 39.0 10-11 38.52932336387249 39.0 39.0 39.0 37.5 39.0 12-13 38.50988706860572 39.0 39.0 39.0 37.0 39.0 14-15 40.106261168538055 41.0 40.0 41.0 38.0 41.0 16-17 40.110821275026645 41.0 40.0 41.0 38.0 41.0 18-19 40.09233367235713 41.0 40.0 41.0 38.0 41.0 20-21 40.08830590752349 41.0 40.0 41.0 38.0 41.0 22-23 40.01153525104645 41.0 40.0 41.0 38.0 41.0 24-25 39.96348470543424 41.0 40.0 41.0 38.0 41.0 26-27 39.887429747109856 41.0 40.0 41.0 38.0 41.0 28-29 39.860119759144524 41.0 40.0 41.0 38.0 41.0 30-31 39.80425934105119 41.0 40.0 41.0 37.5 41.0 32-33 39.763649928886046 41.0 40.0 41.0 37.0 41.0 34-35 39.684072195861205 41.0 40.0 41.0 37.0 41.0 36-37 39.55503835291162 41.0 40.0 41.0 36.5 41.0 38-39 39.427406022197275 41.0 39.0 41.0 36.0 41.0 40-41 39.28023913334171 41.0 39.0 41.0 35.0 41.0 42-43 39.158740634636345 41.0 39.0 41.0 35.0 41.0 44-45 38.885322666915194 40.5 38.0 41.0 35.0 41.0 46-47 38.637028084947744 40.0 38.0 41.0 35.0 41.0 48-49 38.49362912146912 40.0 37.0 41.0 35.0 41.0 50-51 38.27943327646918 40.0 37.0 41.0 35.0 41.0 52-53 37.97103777751664 39.5 36.0 41.0 34.5 41.0 54-55 37.72683478060028 39.0 35.5 41.0 34.0 41.0 56-57 37.431475320823225 39.0 35.0 41.0 34.0 41.0 58-59 37.1091933529724 38.0 35.0 41.0 34.0 41.0 60-61 36.803607463115966 37.0 35.0 40.5 33.0 41.0 62-63 36.54927832503333 36.5 35.0 40.0 33.0 41.0 64-65 36.248644073634345 36.0 35.0 40.0 33.0 41.0 66-67 35.94952833820258 35.5 35.0 39.0 33.0 41.0 68-69 35.66969390608095 35.0 35.0 39.0 33.0 41.0 70-71 35.38140886675554 35.0 35.0 38.5 32.5 40.5 72-73 35.09590253943684 35.0 35.0 37.0 32.0 39.5 74-75 34.80664500156005 35.0 35.0 37.0 32.0 39.0 76-77 33.03886853845624 34.5 32.0 35.0 28.5 38.0 78-79 34.37881351124654 35.0 34.5 36.0 31.5 37.5 80-81 34.35617050330852 35.0 35.0 35.5 32.0 37.0 82-83 34.20808885800305 35.0 35.0 35.0 32.0 37.0 84-85 34.06606912033454 35.0 35.0 35.0 32.0 36.0 86-87 33.92997250665554 35.0 35.0 35.0 32.0 36.0 88-89 33.83186766320755 35.0 34.0 35.0 31.5 36.0 90-91 33.72606336638478 35.0 34.0 35.0 31.0 36.0 92-93 33.66125393558008 35.0 34.0 35.0 31.0 35.0 94-95 33.58134646476516 35.0 34.0 35.0 31.0 35.0 96-97 33.54986840878976 35.0 34.0 35.0 31.0 35.0 98-99 33.53154643477979 35.0 34.0 35.0 31.0 35.0 100-101 32.640450570735084 34.5 32.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 3.0 14 13.0 15 48.0 16 113.0 17 202.0 18 395.0 19 558.0 20 841.0 21 1235.0 22 1678.0 23 1865.0 24 2026.0 25 2686.0 26 3479.0 27 4991.0 28 6630.0 29 7935.0 30 8103.0 31 8982.0 32 10776.0 33 14753.0 34 26498.0 35 57407.0 36 163723.0 37 327369.0 38 278817.0 39 56013.0 40 9.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.51290857305089 17.08280800513677 12.69762770435903 24.70665571745331 2 17.211097018886733 18.776515780815036 37.137896242508724 26.87449095778951 3 20.93779250932991 24.828901036116164 26.846329020572394 27.386977433981528 4 13.801375275034747 15.598167650646102 36.62601757791132 33.97443949640783 5 15.081325191359351 37.15076158792805 33.133126947529654 14.634786273182948 6 32.47628521761681 34.09174713416833 18.62689282660756 14.805074821607297 7 29.7030435152581 29.193697398971587 20.582526632278036 20.520732453492283 8 27.983139306365405 32.33709636245021 19.225891153099635 20.453873178084745 9 27.91668523868761 14.826753435148529 18.584953826579195 38.67160749958467 10-11 28.08352952140915 23.27634761960719 25.98034945114613 22.659773407837527 12-13 28.350814670140643 21.327399741477468 26.035660306256002 24.28612528212588 14-15 25.14248116797076 23.246919408234632 23.546823779210413 28.063775644584194 16-17 25.193385389019678 25.585930377207877 24.600262574608873 24.62042165916357 18-19 25.09790831769907 25.11259709790224 25.342096625835236 24.447397958563457 20-21 26.18394940540409 23.756079425330324 24.89492382547174 25.165047343793844 22-23 26.448747008395486 24.261564371731396 24.221802940319865 25.067885679553253 24-25 26.064586321752447 23.820030309661004 24.598741419691557 25.516641948894993 26-27 25.58567721563548 25.328921875767698 24.653121965624468 24.432278942972356 28-29 25.138940948830424 25.179210017120685 25.14714672123674 24.534702312812147 30-31 25.33023347692962 24.144234495019713 25.162273937146868 25.363258090903795 32-33 25.21251911443742 24.57532899118824 25.493733706192543 24.718418188181797 34-35 26.135175602462123 23.955543218831423 24.597767638251227 25.311513540455227 36-37 24.771295097071373 24.26128354342797 25.519875964217643 25.44754539528301 38-39 25.208175471155286 24.417412586562502 24.581268462277187 25.793143480005025 40-41 25.604164725046296 24.228332529671338 25.12845085032842 25.03905189495395 42-43 25.438181508750464 24.488577194098553 25.305577279192175 24.767664017958808 44-45 25.723189266183493 23.90394555286976 25.068079174458962 25.304786006487785 46-47 25.337651350681433 23.8859723066333 24.851190099041016 25.925186243644248 48-49 24.856049079058533 24.089036835632562 25.386469221246795 25.668444864062113 50-51 25.42536681429735 24.211617710819453 24.930506874349135 25.432508600534064 52-53 25.52482051811939 24.45988287458707 24.40467326548123 25.610623341812317 54-55 25.719598277056733 23.732256966533892 24.732512247403633 25.81563250900574 56-57 25.740306329461454 24.038965650515742 24.610553712004517 25.61017430801829 58-59 25.986459912026415 24.21675288199369 24.877441479731672 24.91934572624822 60-61 25.442830630235346 24.75418283112676 24.394253904929922 25.40873263370797 62-63 25.216684833479885 24.03246524330698 25.13224967279476 25.61860025041838 64-65 25.548955171868858 23.889224310842955 24.564705596323954 25.997114920964233 66-67 25.102517555624893 24.232941767597158 24.500277567294873 26.164263109483077 68-69 25.447703890399413 24.271537803855146 25.125614396220225 25.15514390952522 70-71 25.89257132669063 24.05515687617257 24.872207612232412 25.180064184904396 72-73 25.256445841960883 24.09653871557254 25.267335799697715 25.379679642768867 74-75 25.415489875884873 23.85989740140283 25.205490969945743 25.519121752766555 76-77 25.333220550343842 23.25840186841568 24.868902437480152 26.53947514376032 78-79 25.46231759552301 23.145765541611116 24.924829701790717 26.46708716107516 80-81 24.92898403609759 24.30837947851387 24.748050353458915 26.01458613192963 82-83 24.74909815132418 24.3571067499106 25.284939608302377 25.608855490462844 84-85 25.170759578111774 23.64680157243169 25.422599881373692 25.75983896808284 86-87 24.82221510857541 24.76102874138427 24.834320689501475 25.582435460538843 88-89 25.45879645200112 23.552952546122768 24.138477715600903 26.84977328627521 90-91 25.232690538804718 23.90573652582997 24.391327338960316 26.470245596404997 92-93 25.20675724410119 24.052168469165718 25.051106824913795 25.6899674618193 94-95 25.23826214508868 23.735701232236707 24.83234530181898 26.19369132085564 96-97 25.572406569227713 24.229598803826782 24.73443698411991 25.463557642825595 98-99 23.771511465352713 24.565667964682095 25.408651995445464 26.254168574519728 100-101 24.798124273946833 23.961123083878526 24.748453620787878 26.49229902138676 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1.0 1 1.0 2 0.5 3 1.0 4 3.0 5 2.5 6 2.5 7 7.0 8 12.0 9 17.0 10 19.0 11 16.5 12 21.5 13 25.5 14 24.5 15 26.5 16 34.0 17 40.0 18 48.5 19 57.0 20 61.0 21 73.5 22 95.5 23 120.0 24 159.0 25 217.5 26 294.0 27 405.5 28 474.5 29 558.5 30 683.0 31 857.5 32 1201.0 33 1761.0 34 2730.5 35 4669.5 36 7937.0 37 11731.0 38 15246.5 39 18421.5 40 20585.0 41 21760.0 42 22857.5 43 24493.5 44 26371.5 45 28993.0 46 32443.5 47 35691.5 48 38840.0 49 43970.0 50 50085.5 51 51588.0 52 50317.5 53 52567.0 54 57447.5 55 57632.0 56 49477.5 57 43217.5 58 41853.5 59 40025.5 60 34078.0 61 26069.0 62 20911.0 63 15102.0 64 9454.5 65 6067.0 66 4604.0 67 3951.5 68 2842.5 69 1787.0 70 1140.0 71 762.0 72 580.0 73 472.0 74 346.0 75 241.5 76 193.0 77 116.5 78 63.5 79 34.0 80 17.0 81 12.5 82 10.0 83 5.5 84 3.5 85 3.0 86 1.5 87 1.0 88 1.0 89 1.0 90 1.0 91 0.5 92 0.0 93 0.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4486662587575521 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 7.091135270496419E-4 22-23 0.001063670290574463 24-25 4.052077297426526E-4 26-27 0.0021779915473667576 28-29 0.003849473432555199 30-31 5.571606283961473E-4 32-33 1.5195289865349473E-4 34-35 0.0032416618379412206 36-37 0.0013675760878814525 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.006280719811011115 46-47 0.07481147710373723 48-49 6.078115946139789E-4 50-51 0.0 52-53 1.0130193243566314E-4 54-55 0.0 56-57 0.007445692034021241 58-59 0.03793757369715585 60-61 0.029023003642817492 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 1.5195289865349473E-4 78-79 0.005672908216397135 80-81 0.004659888892040505 82-83 9.117173919209683E-4 84-85 0.0014688780203171155 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06584625608318104 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 987148.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.605036829666126 #Duplication Level Percentage of deduplicated Percentage of total 1 72.8093940489236 33.204750971468336 2 15.25881353702106 13.91757506665707 3 5.3452429705941285 7.313100076123777 4 2.3223388502439746 4.236413951853638 5 1.2646498254282879 2.8837200932643947 6 0.7355579951163901 2.0127089674583005 7 0.4643739154710208 1.482445266245452 8 0.32040665918365324 1.1689725994032631 9 0.21877081206958116 0.8979345847520294 >10 1.0103656453521608 8.290686101073936 >50 0.10390770927161438 3.375117448855843 >100 0.12481868431524602 12.517206899429134 >500 0.01579701705899959 4.876354185179558 >1k 0.0055623299503519685 3.823013788235261 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 2972 0.30106934319879086 No Hit GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 2201 0.22296555329089457 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 2167 0.21952128758808204 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 2078 0.210505415601308 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 1990 0.20159084554696965 No Hit CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG 1822 0.18457212089777825 No Hit TCATTTAGGTGAGAAAACCCTCTCTACTTTGGCGCGACTGCGTGAACGCG 1572 0.15924663778886244 No Hit GTATCAACGCAGAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCG 1552 0.15722059914014921 No Hit ATATACACCAGATTCAGACAGCCAATCACCCGTTGTTCACTGCGCAGCGG 1550 0.15701799527527788 No Hit GTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCC 1484 0.15033206773452412 No Hit GAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCAT 1467 0.14860993488311783 No Hit TCCTTTCACCGGGCAATGGTCGGGCGACGTTTGCCGCTTCTGAAAACCGC 1457 0.1475969155587612 No Hit ACATTACCCTCACTTTTGCCACGGGGCGTCATGCGCTGGAGATGCAGCAT 1434 0.14526697111274095 No Hit GTATCAGCAATGGGATACCCGAGCCAGCATGCATATCTTCAATGACGACG 1405 0.14232921507210672 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 1352 0.13696021265301656 No Hit ATCTTACACGCTTGCAGATCCAGCTATACGAAGCATTAGGCGAGCGTGCA 1243 0.1259183020175293 No Hit GGCCTGACCTGGCTGGCCTTTTGCCCGGAACAAGACCGCAAGGAATTAAT 1201 0.12166362085523144 No Hit GCATATTCTCGGGGCGCTATCGCTGGATGCGTATTTGATTACCGGCAACG 1191 0.1206506015308748 No Hit CTTTTACATCGTGATGATTTACCTGCGGATGTCGCGGAGCTGGTGCTGTA 1186 0.12014409186869648 No Hit GGTCAGGCCCGAGGCGGTTTTCAGAAGCGGCAAACGTCGCCCGACCATTG 1117 0.11315425853063574 No Hit GGATGGCACTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCT 1081 0.10950738896295185 No Hit GACTAACATTTCGCGATCGTTCATCGCATCACCAAAGGCCGTGCAATCGC 1073 0.10869697350346655 No Hit GTATCAACGCAGAGTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTAC 1039 0.105252707800654 No Hit GTGAAAGGATAAGCGGCTGAAACGGTGAGTGGTTTCGCGTACCACCATTG 1029 0.10423968847629737 No Hit GAGTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCG 1014 0.10272015948976243 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 1.0130193243566314E-4 0.0 6 0.0 0.0 0.0 1.0130193243566314E-4 0.0 7 0.0 0.0 0.0 1.0130193243566314E-4 0.0 8 0.0 0.0 0.0 1.0130193243566314E-4 0.0 9 0.0 0.0 0.0 1.0130193243566314E-4 0.0 10-11 0.0 0.0 0.0 1.0130193243566314E-4 0.0 12-13 0.0 0.0 0.0 1.0130193243566314E-4 0.0 14-15 0.0 0.0 0.0 1.0130193243566314E-4 0.0 16-17 0.0 0.0 0.0 1.5195289865349473E-4 0.0 18-19 0.0 0.0 0.0 2.5325483108915785E-4 0.0 20-21 0.0 0.0 0.0 3.5455676352482096E-4 0.0 22-23 0.0 0.0 0.0 8.104154594853051E-4 0.0 24-25 0.0 0.0 0.0 0.0012156231892279576 0.0 26-27 0.0 0.0 0.0 0.0016208309189706103 0.0 28-29 0.0 0.0 0.0 0.00258319927710941 0.0 30-31 0.0 0.0 0.0 0.006280719811011115 0.0 32-33 0.0 0.0 0.0 0.016360262088359598 0.0 34-35 0.0 0.0 0.0 0.025831992771094103 0.0 36-37 0.0 0.0 0.0 0.04431959544060263 0.0 38-39 0.0 0.0 0.0 0.07937006406334207 0.0 40-41 0.0 0.0 0.0 0.12009344090247866 0.0 42-43 0.0 0.0 0.0 0.16177918609975403 0.0 44-45 0.0 0.0 0.0 0.2071118008647133 0.0 46-47 0.0 0.0 0.0 0.2597381547650403 0.0 48-49 0.0 0.0 0.0 0.31854392654394276 0.0 50-51 0.0 0.0 0.0 0.37922378407290497 0.0 52-53 0.0 0.0 0.0 0.4479064942642846 0.0 54-55 0.0 0.0 0.0 0.5167411573543177 0.0 56-57 0.0 0.0 0.0 0.5954527588568279 0.0 58-59 0.0 0.0 0.0 0.6844971574677758 0.0 60-61 0.0 0.0 0.0 0.7872173169575383 0.0 62-63 0.0 0.0 0.0 0.9049808134139967 0.0 64-65 0.0 0.0 0.0 1.0140829946472059 0.0 66-67 0.0 0.0 0.0 1.1363037761308334 0.0 68-69 0.0 0.0 0.0 1.2830396252638914 0.0 70-71 0.0 0.0 0.0 1.4414758475932685 0.0 72-73 0.0 0.0 0.0 1.6180451158286295 0.0 74-75 0.0 0.0 0.0 1.795627403388347 0.0 76-77 0.0 0.0 0.0 1.9726525303196683 0.0 78-79 0.0 0.0 0.0 2.170951063062479 0.0 80-81 0.0 0.0 0.0 2.4056676405159108 0.0 82-83 0.0 0.0 0.0 2.663177152767366 0.0 84-85 0.0 0.0 0.0 2.924586789417595 0.0 86-87 0.0 0.0 0.0 3.203622962311629 0.0 88-89 0.0 0.0 0.0 3.5018052004360034 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 915 0.0 52.63272 1 GTATCAA 1780 0.0 45.80698 1 ATCAACG 2485 0.0 32.680138 3 TCAACGC 2515 0.0 32.47915 4 GTCTAAT 285 0.0 28.441965 1 GTACATG 5495 0.0 28.201433 1 CGCAGAG 2990 0.0 27.160583 8 TACATGG 5625 0.0 27.017282 2 ACATGGG 5550 0.0 26.954529 3 TCGCACC 1230 0.0 26.748505 1 TATAACG 215 5.820766E-11 26.506779 2 ACGCAGA 3075 0.0 26.409801 7 CAACGCA 3105 0.0 26.307587 5 CGCACCA 1305 0.0 25.838186 2 TATCAAC 3245 0.0 25.758001 2 AACGCAG 3175 0.0 25.727577 6 CATGGGG 4285 0.0 25.491253 4 TAACGCT 205 9.586074E-10 25.483143 4 GTATTAG 155 1.3640692E-6 24.610125 1 GTATAGG 310 0.0 24.610125 1 >>END_MODULE