##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224562_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 972031 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.182223612209896 34.0 33.0 34.0 31.0 34.0 2 33.309657819555134 34.0 34.0 34.0 31.0 34.0 3 33.421554456596546 34.0 34.0 34.0 31.0 34.0 4 36.625142613764375 37.0 37.0 37.0 35.0 37.0 5 36.6608266608781 37.0 37.0 37.0 35.0 37.0 6 36.70184901510343 37.0 37.0 37.0 36.0 37.0 7 36.68333623104613 37.0 37.0 37.0 36.0 37.0 8 36.66797766737892 37.0 37.0 37.0 35.0 37.0 9 38.517863113419224 39.0 39.0 39.0 37.0 39.0 10-11 38.53916644633762 39.0 39.0 39.0 37.5 39.0 12-13 38.536254502171225 39.0 39.0 39.0 37.0 39.0 14-15 40.15075650879447 41.0 40.0 41.0 38.0 41.0 16-17 40.155881859734926 41.0 40.0 41.0 38.0 41.0 18-19 40.148994219320166 41.0 40.0 41.0 38.0 41.0 20-21 40.15099106921487 41.0 40.0 41.0 38.0 41.0 22-23 40.078818473896405 41.0 40.0 41.0 38.0 41.0 24-25 40.043507357275644 41.0 40.0 41.0 38.0 41.0 26-27 39.99022562037631 41.0 40.0 41.0 38.0 41.0 28-29 39.966599316276955 41.0 40.0 41.0 38.0 41.0 30-31 39.9214351188388 41.0 40.0 41.0 38.0 41.0 32-33 39.89057087685475 41.0 40.0 41.0 38.0 41.0 34-35 39.815903505135125 41.0 40.0 41.0 38.0 41.0 36-37 39.72508541394256 41.0 40.0 41.0 37.0 41.0 38-39 39.63754551037981 41.0 40.0 41.0 37.0 41.0 40-41 39.52710973209702 41.0 40.0 41.0 37.0 41.0 42-43 39.44474764693719 41.0 39.0 41.0 36.0 41.0 44-45 39.23468438763784 41.0 39.0 41.0 35.0 41.0 46-47 39.04029964064932 41.0 39.0 41.0 35.0 41.0 48-49 38.965065414580394 40.5 39.0 41.0 35.0 41.0 50-51 38.820467145595146 40.0 38.0 41.0 35.0 41.0 52-53 38.59645422831164 40.0 37.5 41.0 35.0 41.0 54-55 38.42266656104589 40.0 37.0 41.0 35.0 41.0 56-57 38.209546300478074 40.0 36.5 41.0 35.0 41.0 58-59 37.94913433830814 40.0 36.0 41.0 34.0 41.0 60-61 37.69973231306409 39.0 35.0 41.0 34.0 41.0 62-63 37.4805181110479 39.0 35.0 41.0 34.0 41.0 64-65 37.20424400044854 38.5 35.0 41.0 34.0 41.0 66-67 36.90332047023192 37.5 35.0 40.5 33.0 41.0 68-69 36.61193470167103 37.0 35.0 40.0 33.0 41.0 70-71 36.28654127286064 36.5 35.0 39.0 33.0 41.0 72-73 35.94549402230999 36.0 35.0 39.0 33.0 41.0 74-75 35.601830085665995 35.5 35.0 39.0 33.0 40.5 76-77 33.73020459224037 34.5 32.5 36.5 29.5 39.0 78-79 34.98026811902089 35.0 35.0 37.0 32.5 39.0 80-81 34.86885809197443 35.0 35.0 36.5 33.0 39.0 82-83 34.65029201743566 35.0 35.0 36.0 33.0 37.0 84-85 34.44445187447725 35.0 35.0 36.0 33.0 37.0 86-87 34.24440115593021 35.0 35.0 35.5 32.5 36.5 88-89 34.10025040353651 35.0 35.0 35.0 32.0 36.0 90-91 33.96922268939983 35.0 35.0 35.0 32.0 36.0 92-93 33.88270487258123 35.0 35.0 35.0 32.0 36.0 94-95 33.79695297783712 35.0 34.0 35.0 32.0 36.0 96-97 33.749814563527295 35.0 34.0 35.0 32.0 35.0 98-99 33.72739398229069 35.0 34.0 35.0 32.0 35.0 100-101 32.902037589336146 34.5 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 1.0 14 12.0 15 32.0 16 84.0 17 168.0 18 270.0 19 447.0 20 646.0 21 952.0 22 1319.0 23 1467.0 24 1649.0 25 2247.0 26 3114.0 27 4316.0 28 5829.0 29 6640.0 30 6909.0 31 7662.0 32 9230.0 33 12599.0 34 21012.0 35 42169.0 36 115937.0 37 262422.0 38 366236.0 39 98641.0 40 19.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.912908536755516 18.638980785866437 13.70827300171874 24.739837675659306 2 15.935397122108247 20.993569135140753 38.03407504493169 25.036958697819305 3 19.433125075229082 26.38218328427797 28.626864781061514 25.557826859431437 4 13.351631789521115 18.299725008770295 38.82828839820952 29.520354803499067 5 14.798396347441594 37.22000635782192 33.931119480757296 14.050477813979183 6 28.998149235981156 36.47219070173688 20.578870426971978 13.950789635309985 7 27.58091048536518 31.102094480525828 22.325111030409523 18.99188400369947 8 26.21552193294247 33.016951105468856 21.42369944991466 19.34382751167401 9 27.55477963151381 15.655776410423124 19.951935689293858 36.837508268769206 10-11 25.90508944673575 24.979450243870822 27.908883564413067 21.206576744980353 12-13 26.950837987677346 22.8347141191999 27.40833368483104 22.80611420829171 14-15 24.10607274870863 24.350355081267985 25.07368592153954 26.469886248483842 16-17 23.68772189364331 26.7071729193822 25.895213218508463 23.709891968466028 18-19 23.644976343347075 26.401832863355178 26.75459939034866 23.198591402949084 20-21 24.870939135122455 25.24809109258844 26.186855853056823 23.694113919232283 22-23 24.989969321555776 25.642477814196855 25.54109080284521 23.826462061402154 24-25 24.453320507907442 25.435288610661733 25.9309021606899 24.180488720740925 26-27 24.01771793382678 26.463218723685312 26.00792481966483 23.51113852282308 28-29 23.795073968659448 26.35140244413706 26.34234894153752 23.51117464566597 30-31 24.230225360241516 25.71728094491737 26.12900023301954 23.923493461821575 32-33 23.954855326041724 25.734171921560073 26.63635554645662 23.674617205941583 34-35 24.498915628935215 25.78740360002963 26.036531164865558 23.677149606169596 36-37 23.55566712224972 26.010002937198983 26.33901037484523 24.095319565706067 38-39 23.787307194935142 25.886314325366165 26.00776106934861 24.318617410350083 40-41 24.029017593060303 25.733747174730027 26.348388065812717 23.888847166396957 42-43 24.036476202919456 25.757306094147204 26.592567520994702 23.61365018193864 44-45 24.205022524040302 25.722160805752083 26.158289191495754 23.914527478711864 46-47 24.05325698130477 25.47492228123306 25.954130098049966 24.517690639412205 48-49 23.74721650820889 25.432254606489234 26.43099383709584 24.38953504820604 50-51 23.87007204502737 25.748870149203064 26.1741652272407 24.206892578528873 52-53 24.194199667603023 25.705829189516173 25.824292550490956 24.27567859238985 54-55 23.993267704425065 25.329027572165906 26.31418133783799 24.363523385571035 56-57 24.101133190527047 25.568395775073927 25.975208499237613 24.35526253516142 58-59 24.453336585551607 25.647754914477467 26.02628842133105 23.872620078639873 60-61 23.977837385313666 25.953599083692787 26.04683519488251 24.021728336111035 62-63 23.740652304298937 25.55592362795014 26.448179121859283 24.255244945891643 64-65 24.06661927448816 25.540440582656316 26.06244039541949 24.330499747436036 66-67 23.7071142792771 25.80216063067947 25.91686890644434 24.573856183599084 68-69 23.974749776498896 25.828034291087427 26.292319895147376 23.9048960372663 70-71 24.230554375323422 25.621868026842765 26.09875610963025 24.048821488203565 72-73 23.95098510232698 25.39924138221929 26.2912911213737 24.358482394080024 74-75 23.940697364590225 25.231499818421426 26.449722282519794 24.378080534468552 76-77 23.83042266764812 24.99530620758548 25.97392977675037 25.200341348016032 78-79 23.908874382044438 24.905422576148073 26.13726972956567 25.048433312241826 80-81 23.46207147729412 25.580700286942125 26.247899890223287 24.709328345540463 82-83 23.576638994096324 25.590431898882894 26.326320971295385 24.506608135725394 84-85 23.657024633967808 24.9778937800633 26.562751572383657 24.80233001358523 86-87 23.537315167931887 25.676598791602324 26.112490239508823 24.673595800956967 88-89 23.85731525023379 25.251046520121275 25.81049369824625 25.081144531398692 90-91 23.769612286027915 25.356187199790952 25.826542569115595 25.047657945065538 92-93 23.73741166691186 25.142408009621093 26.375239061305656 24.74494126216139 94-95 23.589268243502524 25.082276182549734 26.203433841101777 25.12502173284597 96-97 23.62244619770357 25.62500578685248 26.057347965239792 24.69520005020416 98-99 22.719748649991615 25.589461652971973 26.553782749727116 25.137006947309292 100-101 23.362808536090093 25.162410443270744 26.23217551497532 25.24260550566384 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.5 2 1.5 3 1.0 4 0.0 5 1.5 6 3.0 7 4.5 8 7.0 9 10.5 10 13.0 11 10.5 12 12.5 13 18.0 14 20.0 15 23.5 16 26.0 17 30.0 18 33.0 19 35.0 20 43.0 21 49.0 22 64.5 23 95.0 24 117.0 25 143.0 26 194.5 27 256.0 28 317.5 29 392.5 30 493.0 31 639.5 32 903.0 33 1450.5 34 2586.0 35 4819.5 36 9503.5 37 16635.5 38 25996.0 39 35279.0 40 42254.5 41 46482.0 42 46545.0 43 44863.0 44 42639.5 45 40985.5 46 39956.0 47 39541.5 48 40718.5 49 43306.5 50 46403.5 51 45259.5 52 42272.5 53 41207.5 54 41407.0 55 40407.5 56 34611.0 57 28977.5 58 26861.0 59 25067.5 60 20281.5 61 14857.0 62 11490.0 63 8021.5 64 5007.0 65 3275.5 66 2562.0 67 2079.5 68 1498.5 69 974.5 70 596.5 71 398.0 72 295.0 73 216.5 74 148.5 75 114.5 76 77.5 77 47.0 78 30.0 79 19.5 80 12.0 81 8.5 82 9.5 83 7.5 84 3.0 85 3.0 86 2.0 87 0.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4590388578142055 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 9.258963963083483E-4 22-23 0.001337405905778725 24-25 3.6007082078657986E-4 26-27 0.002211863613403276 28-29 0.0032406373870792187 30-31 9.773350849921454E-4 32-33 5.143868868379713E-5 34-35 0.004012217717336176 36-37 0.0016974767265653052 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0071499777270478005 46-47 0.07618069794070353 48-49 5.658255755217683E-4 50-51 0.0 52-53 5.143868868379713E-5 54-55 0.0 56-57 0.008744577076245512 58-59 0.039762106352575176 60-61 0.031326161408432446 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 2.5719344341898563E-4 78-79 0.007818680679937164 80-81 0.005966887887320466 82-83 9.773350849921454E-4 84-85 0.002006108858668088 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06681885660025245 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 972031.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.26191740008082 #Duplication Level Percentage of deduplicated Percentage of total 1 75.13274335760465 40.768467141118144 2 14.628509941965293 15.875419963143633 3 4.760179256173011 7.748893608241142 4 1.99107059017169 4.3215723160650565 5 1.060870436690224 2.8782432003936296 6 0.5896436937426931 1.9197118443206738 7 0.3784219915877273 1.4373731994935137 8 0.25105217112575434 1.089805773818931 9 0.17639470755489756 0.8614363546039736 >10 0.8666768273240484 8.410015308285448 >50 0.07699561617915722 2.9533632092085678 >100 0.0804080792553543 8.652855849185274 >500 0.00589279052407332 2.341012690719993 >1k 0.0011405401014335458 0.7418295414019294 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 1447 0.14886356505090886 No Hit GTATCAACGCAGAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCG 1230 0.12653917416214092 No Hit CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG 1208 0.12427587186005384 No Hit TCATTTAGGTGAGAAAACCCTCTCTACTTTGGCGCGACTGCGTGAACGCG 1152 0.11851473872746858 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 1108 0.11398813412329442 No Hit GAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCAT 1047 0.10771261410387119 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 1.0287737736759424E-4 0.0 8 0.0 0.0 0.0 1.0287737736759424E-4 0.0 9 0.0 0.0 0.0 1.0287737736759424E-4 0.0 10-11 0.0 0.0 0.0 1.0287737736759424E-4 0.0 12-13 0.0 0.0 0.0 1.0287737736759424E-4 0.0 14-15 0.0 0.0 0.0 1.0287737736759424E-4 0.0 16-17 0.0 0.0 0.0 1.0287737736759424E-4 0.0 18-19 0.0 0.0 0.0 1.0287737736759424E-4 0.0 20-21 0.0 0.0 0.0 2.5719344341898563E-4 0.0 22-23 0.0 0.0 0.0 4.629481981541741E-4 0.0 24-25 0.0 0.0 0.0 5.143868868379713E-4 0.0 26-27 0.0 0.0 0.0 9.773350849921454E-4 0.0 28-29 0.0 0.0 0.0 0.0018517927926166963 0.0 30-31 0.0 0.0 0.0 0.006018326576004263 0.0 32-33 0.0 0.0 0.0 0.018877998746953544 0.0 34-35 0.0 0.0 0.0 0.0338980958426223 0.0 36-37 0.0 0.0 0.0 0.05879442116558011 0.0 38-39 0.0 0.0 0.0 0.10730110459440079 1.0287737736759424E-4 40-41 0.0 0.0 0.0 0.1660440870712971 1.0287737736759424E-4 42-43 0.0 0.0 0.0 0.22648454627475872 1.0287737736759424E-4 44-45 0.0 0.0 0.0 0.2965954789507742 1.0287737736759424E-4 46-47 0.0 0.0 0.0 0.3783315552693278 1.0287737736759424E-4 48-49 0.0 0.0 0.0 0.4686064539093918 2.0575475473518849E-4 50-51 0.0 0.0 0.0 0.5654655047009818 2.0575475473518849E-4 52-53 0.0 0.0 0.0 0.6672626696062163 2.0575475473518849E-4 54-55 0.0 0.0 0.0 0.7658191971243715 2.0575475473518849E-4 56-57 0.0 0.0 0.0 0.8833051620781642 2.0575475473518849E-4 58-59 0.0 0.0 0.0 1.0142166247784279 2.0575475473518849E-4 60-61 0.0 0.0 0.0 1.1653434921314239 2.0575475473518849E-4 62-63 0.0 0.0 0.0 1.3134354768520757 2.0575475473518849E-4 64-65 0.0 0.0 0.0 1.4585954563177512 2.0575475473518849E-4 66-67 0.0 0.0 0.0 1.6314294502953095 2.5719344341898563E-4 68-69 0.0 0.0 0.0 1.8201065603874773 3.0863213210278274E-4 70-71 0.0 0.0 0.0 2.036457684991528 3.0863213210278274E-4 72-73 0.0 0.0 0.0 2.26407388241733 3.0863213210278274E-4 74-75 0.0 0.0 0.0 2.4924102214847057 3.0863213210278274E-4 76-77 0.0 0.0 0.0 2.733400477968295 3.0863213210278274E-4 78-79 0.0 0.0 0.0 3.0079801981624046 3.0863213210278274E-4 80-81 0.0 0.0 0.0 3.31774398141623 3.0863213210278274E-4 82-83 0.0 0.0 0.0 3.6461800086622755 4.1150950947037697E-4 84-85 0.0 0.0 0.0 3.98058292379564 4.1150950947037697E-4 86-87 0.0 0.0 0.0 4.333400889477804 4.1150950947037697E-4 88-89 0.0 0.0 0.0 4.71847091296471 4.1150950947037697E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 1490 0.0 48.99766 1 GGTATCA 760 0.0 48.972378 1 AAACCGT 185 0.0 38.50411 6 TATCACG 50 0.001617633 37.99072 2 ATCAACG 1910 0.0 37.543186 3 AAATGCG 255 0.0 37.245804 6 TCAACGC 1940 0.0 37.207405 4 CCGTGCG 175 0.0 35.2771 9 AATGCGG 275 0.0 34.537018 7 AACCGTG 215 0.0 33.13144 7 TATCAAC 2445 0.0 30.10512 2 CAACGCA 2480 0.0 29.105793 5 ATGCGGG 295 0.0 28.975973 8 ACGCAGA 2600 0.0 27.945097 7 AACGCAG 2585 0.0 27.923548 6 CGCAGAG 2610 0.0 27.838028 8 ACCGTGC 270 1.8189894E-12 24.623615 8 GTACATG 4505 0.0 24.361454 1 TACATGG 4520 0.0 23.849262 2 AGACCGC 665 0.0 23.565672 6 >>END_MODULE