##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224561_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1001717 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.16515442984396 34.0 31.0 34.0 31.0 34.0 2 32.33267879051668 34.0 31.0 34.0 31.0 34.0 3 32.47533984149216 34.0 31.0 34.0 31.0 34.0 4 35.76629726759155 37.0 37.0 37.0 35.0 37.0 5 35.7750552301698 37.0 37.0 37.0 35.0 37.0 6 35.876592890007856 37.0 37.0 37.0 35.0 37.0 7 35.83460897638754 37.0 37.0 37.0 35.0 37.0 8 35.870443448598756 37.0 37.0 37.0 35.0 37.0 9 37.594631018541165 39.0 39.0 39.0 35.0 39.0 10-11 37.6612491352348 39.0 38.5 39.0 35.0 39.0 12-13 37.657811537589964 39.0 39.0 39.0 35.0 39.0 14-15 39.14132434609775 41.0 40.0 41.0 36.0 41.0 16-17 38.97432907697484 41.0 39.5 41.0 35.5 41.0 18-19 39.05177060986287 41.0 39.5 41.0 36.0 41.0 20-21 39.11376316863945 41.0 40.0 41.0 36.0 41.0 22-23 39.067975286433196 41.0 40.0 41.0 36.0 41.0 24-25 39.00403906492552 41.0 39.0 41.0 35.5 41.0 26-27 38.83307511003607 41.0 39.0 41.0 35.0 41.0 28-29 38.74718458406915 41.0 39.0 41.0 35.0 41.0 30-31 38.66299314077729 41.0 39.0 41.0 35.0 41.0 32-33 38.465592078401386 40.5 39.0 41.0 34.0 41.0 34-35 38.458009098378085 40.0 38.0 41.0 34.0 41.0 36-37 38.44580205786664 40.0 38.0 41.0 34.5 41.0 38-39 38.31870977531578 40.0 38.0 41.0 34.0 41.0 40-41 38.21627665298682 40.0 38.0 41.0 34.0 41.0 42-43 38.05596440910956 40.0 38.0 41.0 33.0 41.0 44-45 37.866345983945564 40.0 38.0 41.0 33.0 41.0 46-47 37.67278033616281 40.0 37.0 41.0 33.0 41.0 48-49 37.445667788407306 40.0 37.0 41.0 32.0 41.0 50-51 36.14843713344188 38.5 35.0 40.0 30.0 40.5 52-53 36.46951434387157 39.0 35.0 40.0 30.5 40.5 54-55 36.91352946990018 39.0 35.0 41.0 31.0 41.0 56-57 36.742868494794436 39.0 35.0 41.0 31.0 41.0 58-59 36.58004456348449 39.0 35.0 41.0 31.0 41.0 60-61 36.31983684014547 38.0 35.0 41.0 31.0 41.0 62-63 36.022653104619366 37.5 35.0 41.0 30.5 41.0 64-65 35.76208799491273 37.0 35.0 40.0 30.0 41.0 66-67 35.51573448389116 36.5 35.0 40.0 30.0 41.0 68-69 35.19955736001286 36.0 35.0 39.5 29.0 41.0 70-71 34.90472508702558 35.0 35.0 39.0 29.0 41.0 72-73 34.590988772277996 35.0 34.0 39.0 29.0 41.0 74-75 34.3125618313356 35.0 34.0 37.5 29.0 40.0 76-77 33.99340682048922 35.0 34.0 37.0 28.5 39.0 78-79 33.77093480493991 35.0 34.0 36.5 28.5 39.0 80-81 33.481126405960964 35.0 34.0 36.0 28.0 38.5 82-83 33.230276115908985 35.0 34.0 36.0 27.0 37.0 84-85 33.01713857307004 35.0 34.0 35.0 27.0 37.0 86-87 32.803392574948816 35.0 33.5 35.0 27.0 36.5 88-89 32.66373137323216 35.0 33.0 35.0 26.5 36.0 90-91 32.49918190466968 35.0 33.0 35.0 26.0 36.0 92-93 32.35993099847562 35.0 33.0 35.0 25.5 36.0 94-95 32.23500349899223 35.0 33.0 35.0 25.0 35.0 96-97 32.11012641294897 35.0 33.0 35.0 25.0 35.0 98-99 32.06468144196415 35.0 33.0 35.0 25.0 35.0 100-101 30.848538559293694 34.0 31.0 35.0 21.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 6.0 7 105.0 8 379.0 9 398.0 10 504.0 11 1117.0 12 1844.0 13 2178.0 14 2140.0 15 2275.0 16 2406.0 17 2606.0 18 2979.0 19 3514.0 20 4074.0 21 5240.0 22 6142.0 23 5986.0 24 5677.0 25 5877.0 26 6060.0 27 6487.0 28 7249.0 29 8178.0 30 10084.0 31 12749.0 32 16908.0 33 23568.0 34 37754.0 35 69319.0 36 148663.0 37 254971.0 38 267281.0 39 76982.0 40 17.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.70536178448889 18.804035734566074 13.145529580190829 24.3450729007542 2 16.21707150529691 19.389327913300775 38.56831676842538 25.825283812976927 3 19.780296571676146 25.32389484423698 28.24119459246851 26.654613991618366 4 12.760090923883691 16.40303598720996 38.30083746207762 32.536035626828735 5 13.847224315849685 38.495303563780986 34.03925459985205 13.618217520517273 6 30.807902830839453 36.83754992677572 18.580696943348272 13.773850299036555 7 27.52683642186366 30.933686859661965 22.17352805233414 19.365948666140238 8 26.351155066750387 34.30070568833313 20.18793731163592 19.160201933280558 9 26.669308796795903 15.151484900425968 20.03569870532296 38.14350759745517 10-11 26.35564735349405 24.758789159013972 27.528084279292454 21.35747920819952 12-13 26.534939508863282 22.480600808411957 27.7120184642968 23.272441218427957 14-15 23.70342555803945 24.494265437181458 24.757262889097163 27.04504611568193 16-17 23.660795904686452 26.988937498314097 25.938784093894895 23.41148250310455 18-19 23.66276532750978 26.486767700067205 26.677141467730326 23.17332550469269 20-21 24.785476735011834 24.811443238222694 26.452676047898212 23.95040397886726 22-23 24.652443571560937 25.86400232961331 25.71970016717873 23.763853931647027 24-25 24.03631819709017 25.53716215035598 26.228749526352757 24.197770126201092 26-27 23.874457556375702 26.519016848071857 26.323602374722597 23.282923220829836 28-29 23.615651925643668 26.611607869288434 26.394630419569598 23.3781097854983 30-31 23.73824143944847 25.669774996331302 26.53803419528669 24.05394936893354 32-33 23.662022307697683 25.798354225794313 26.680339856466446 23.859283610041558 34-35 24.297081910359914 25.57364006001695 26.20874957697633 23.920528452646806 36-37 23.596122123745353 25.616190502817844 26.888262923924287 23.89942444951252 38-39 23.76349566147148 25.898641710872255 26.104249476745956 24.233613150910312 40-41 24.383485605637446 25.45650493006855 26.485896654501857 23.67411280979215 42-43 24.199546363017404 25.77734250989835 26.46962808556009 23.553483041524157 44-45 24.28383086402558 25.429302119166753 26.16068446724804 24.126182549559626 46-47 24.121283755791307 25.481198781691834 25.987729069188205 24.409788393328654 48-49 23.552809825529568 25.810133999922137 26.388441046722775 24.248615127825524 50-51 23.836622519134647 25.96896129345913 25.999159443235964 24.19525674417026 52-53 24.196704258787662 25.952888889776254 25.371037927877833 24.47936892355825 54-55 24.07920600329235 25.316182115308017 25.908465165311164 24.696146716088478 56-57 24.10417518329787 25.870343555287352 25.728487051975286 24.296994209439497 58-59 24.48483934755553 25.857153340825008 26.06208436568481 23.595922945934653 60-61 24.19727976739635 26.101262865290376 25.751798245088526 23.94965912222475 62-63 23.820111283313096 25.677146577618714 26.336168674506293 24.166573464561896 64-65 24.584355423804656 25.210344221426745 25.5909314273843 24.6143689273843 66-67 23.74801118082067 25.699512698738385 25.520537693833422 25.03193842660752 68-69 24.02854299168328 25.836488748818283 26.364981327061436 23.769986932437007 70-71 24.28031070651691 25.465825178169084 26.086160063171533 24.167704052142472 72-73 24.1823788555051 25.670174310708514 26.26200813203729 23.885438701749095 74-75 24.109803467446394 25.504109444084506 26.24493744241138 24.14114964605772 76-77 24.10076897966192 25.120917384850213 25.720388093643216 25.05792554184465 78-79 24.090235353379533 24.739387930444874 26.306579939922308 24.863796776253285 80-81 23.93760319805336 25.698999809211585 25.84703563747804 24.51636135525702 82-83 23.82775922488355 26.021095864277715 25.978047156812657 24.173097754026077 84-85 23.89950923976351 25.282515424570768 26.54349312041925 24.274482215246472 86-87 23.782396384760496 26.28964968876596 25.85692374004278 24.071030186430765 88-89 24.140913160340073 25.514533361095342 25.515981379482177 24.828572099082404 90-91 23.793796052178408 25.365247869408226 25.888050217776076 24.952905860637287 92-93 23.799233989578543 25.528273152148355 26.366611809019513 24.305881049253582 94-95 24.085345461842017 25.37203621382087 26.23755012643291 24.3050681979042 96-97 24.187070799437365 25.827204689548044 26.121848785635066 23.863875725379526 98-99 23.19212986187127 26.143681233250526 26.21785436011702 24.446334544761186 100-101 24.0240841597261 25.407020701351023 25.840733331402394 24.728161807520483 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 1.0 2 5.0 3 8.0 4 9.0 5 7.5 6 9.5 7 24.0 8 38.0 9 40.5 10 36.5 11 48.5 12 66.5 13 64.0 14 63.5 15 80.5 16 101.5 17 108.0 18 111.0 19 140.0 20 174.0 21 207.5 22 265.0 23 342.0 24 452.0 25 644.0 26 988.5 27 1481.5 28 2164.5 29 3298.0 30 5136.0 31 7552.0 32 10287.0 33 13273.5 34 16491.0 35 19168.5 36 21553.5 37 23279.5 38 23861.5 39 24380.5 40 25096.0 41 25593.0 42 26039.5 43 26901.5 44 28663.5 45 31727.0 46 35114.5 47 36614.0 48 38479.0 49 42794.5 50 46796.5 51 46330.5 52 44441.5 53 45545.0 54 47372.5 55 46853.5 56 40472.5 57 34316.5 58 31692.0 59 29121.5 60 24304.5 61 18716.0 62 15276.0 63 11272.0 64 7228.0 65 4857.0 66 3751.0 67 3218.0 68 2468.5 69 1537.5 70 913.5 71 610.0 72 401.0 73 309.0 74 241.0 75 179.5 76 137.5 77 91.5 78 66.0 79 48.0 80 25.0 81 20.0 82 18.0 83 11.0 84 10.0 85 10.0 86 7.5 87 9.0 88 9.0 89 9.5 90 7.5 91 3.0 92 3.0 93 1.5 94 2.5 95 4.0 96 5.5 97 4.5 98 2.5 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.14505094752310282 2 9.982859430358075E-5 3 2.9948578291074225E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.037585465755298156 16-17 0.07666836042515002 18-19 0.026554406084752482 20-21 0.042626809767628976 22-23 0.06913130155522967 24-25 0.018019061271796324 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.024058691227162962 38-39 0.00524100120093799 40-41 0.005740144172455893 42-43 0.003494000800625326 44-45 0.012029345613581481 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 4.9914297151790374E-5 58-59 0.01602248938572471 60-61 0.01846828994616244 62-63 0.030847035639806453 64-65 0.05001412574609396 66-67 0.018019061271796324 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.018019061271796324 80-81 0.060695785336577095 82-83 0.052459926306531686 84-85 0.031096607125565404 86-87 0.06204347135967544 88-89 0.034790265114797894 90-91 0.0 92-93 0.003344257909169955 94-95 0.0 96-97 0.0 98-99 6.48885862973275E-4 100-101 0.0477180680771116 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1001717.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.61664247853 #Duplication Level Percentage of deduplicated Percentage of total 1 74.99873663275878 39.46181711747299 2 14.571732004591636 15.334312263571025 3 4.857110810365728 7.666945889628497 4 2.166324093007969 4.559388011777042 5 1.0735883957328216 2.824430839368623 6 0.6161657238225849 1.9452342958738564 7 0.3642235818186433 1.341495539076082 8 0.2420661062753812 1.0189364616049263 9 0.16648450981604843 0.7883870338083904 >10 0.7647207214408407 7.286602421715671 >50 0.08098492285062393 3.015258269645292 >100 0.08596548820566455 9.470381108022918 >500 0.008826813361517213 2.964018546336082 >1k 0.0030701959518320745 2.322792202098576 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 2624 0.2619502314525959 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 2332 0.2328002819159503 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 2013 0.20095496033310806 No Hit GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 1610 0.16072403682876502 No Hit TAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCATCGCA 1398 0.1395603748364059 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 1388 0.1385620888933701 No Hit GGTCAGCACCGTCAATGCAGCGCCTTTATTGCAGCCCACCGGCAGCACTT 1272 0.12698197195415473 No Hit GTGTAAGATCGTCGTGATCGCCACAGAAGCAGATCTTGGTGACGCTGCCG 1247 0.12448625709656519 No Hit CCTTTATTGCAGCCCACCGGCAGCACTTCGAGGCAATCCGTGGCGGAAAA 1230 0.12278917099340432 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 1172 0.11699911252379665 No Hit GTATAGCTGGATCTGCAAGCGTGTAAGATCGTCGTGATCGCCACAGAAGC 1169 0.1166996267408859 No Hit CGCCTAATGCTTCGTATAGCTGGATCTGCAAGCGTGTAAGATCGTCGTGA 1161 0.11590099798645727 No Hit GTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCC 1143 0.11410408328899281 No Hit GACTAACATTTCGCGATCGTTCATCGCATCACCAAAGGCCGTGCAATCGC 1108 0.11061008248836747 No Hit ATGTAAAAGTTCACCTTCCAGAGAATGCACGCGCGTTCCGTTGCCGGTAA 1072 0.10701625309343855 No Hit ATATACACCAGATTCAGACAGCCAATCACCCGTTGTTCACTGCGCAGCGG 1067 0.10651711012192065 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 9.982859430358075E-5 0.0 5 0.0 0.0 0.0 9.982859430358075E-5 0.0 6 0.0 0.0 0.0 9.982859430358075E-5 0.0 7 0.0 0.0 0.0 9.982859430358075E-5 0.0 8 0.0 0.0 0.0 9.982859430358075E-5 0.0 9 0.0 0.0 0.0 1.996571886071615E-4 0.0 10-11 0.0 0.0 0.0 1.996571886071615E-4 0.0 12-13 0.0 0.0 0.0 1.996571886071615E-4 0.0 14-15 0.0 0.0 0.0 1.996571886071615E-4 0.0 16-17 0.0 0.0 0.0 1.996571886071615E-4 0.0 18-19 0.0 0.0 0.0 1.996571886071615E-4 0.0 20-21 0.0 0.0 0.0 2.4957148575895186E-4 0.0 22-23 0.0 4.9914297151790374E-5 0.0 3.99314377214323E-4 0.0 24-25 0.0 9.982859430358075E-5 0.0 3.99314377214323E-4 0.0 26-27 0.0 9.982859430358075E-5 0.0 8.984573487322268E-4 0.0 28-29 0.0 9.982859430358075E-5 0.0 0.0021962290746787762 0.0 30-31 0.0 9.982859430358075E-5 0.0 0.004442372446509343 0.0 32-33 0.0 9.982859430358075E-5 0.0 0.010531916699027769 0.0 34-35 0.0 9.982859430358075E-5 0.0 0.018767775729073184 0.0 36-37 0.0 9.982859430358075E-5 0.0 0.03179540728569047 0.0 38-39 0.0 9.982859430358075E-5 0.0 0.05525512694703195 0.0 40-41 0.0 9.982859430358075E-5 0.0 0.08435516218652572 0.0 42-43 0.0 9.982859430358075E-5 0.0 0.10976153943678704 0.0 44-45 0.0 9.982859430358075E-5 0.0 0.13706465997881637 0.0 46-47 0.0 9.982859430358075E-5 0.0 0.17105629633918562 0.0 48-49 0.0 9.982859430358075E-5 0.0 0.2110875626549215 0.0 50-51 0.0 9.982859430358075E-5 0.0 0.2535646295310951 0.0 52-53 0.0 9.982859430358075E-5 0.0 0.3012826976082067 0.0 54-55 0.0 9.982859430358075E-5 0.0 0.3450076219131751 0.0 56-57 0.0 9.982859430358075E-5 0.0 0.3990148914314123 0.0 58-59 0.0 9.982859430358075E-5 0.0 0.4556676186986943 0.0 60-61 0.0 9.982859430358075E-5 0.0 0.5267954921399955 0.0 62-63 0.0 9.982859430358075E-5 0.0 0.6048614528853957 0.0 64-65 0.0 1.996571886071615E-4 0.0 0.6759893263266971 0.0 66-67 0.0 2.9948578291074225E-4 0.0 0.7571000591983564 0.0 68-69 0.0 2.9948578291074225E-4 0.0 0.8531351669184011 0.0 70-71 0.0 2.9948578291074225E-4 0.0 0.9542615329479284 0.0 72-73 0.0 2.9948578291074225E-4 0.0 1.06387332949326 0.0 74-75 0.0 2.9948578291074225E-4 0.0 1.183418071171798 0.0 76-77 0.0 2.9948578291074225E-4 0.0 1.3094516714800688 0.0 78-79 0.0 2.9948578291074225E-4 0.0 1.4592943915297434 0.0 80-81 0.0 2.9948578291074225E-4 0.0 1.6148273414547223 0.0 82-83 0.0 2.9948578291074225E-4 0.0 1.7939198396353462 0.0 84-85 0.0 2.9948578291074225E-4 0.0 1.980848882468801 0.0 86-87 0.0 2.9948578291074225E-4 0.0 2.172120469154462 0.0 88-89 0.0 2.9948578291074225E-4 0.0 2.386152975341339 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTGCG 255 0.0 54.030514 9 AAACCGT 275 0.0 48.34201 6 GGTATCA 990 0.0 45.63788 1 AACCGTG 335 0.0 41.101017 7 GTATCAA 1640 0.0 40.01956 1 ACCGTGC 390 0.0 38.958874 8 GTCTAAT 630 0.0 33.21614 1 TGCGCGG 235 0.0 30.340425 12-13 ATCAACG 2175 0.0 30.124456 3 CTAATGT 745 0.0 29.315744 3 GTGCGCG 240 0.0 28.712317 10-11 TCAACGC 2295 0.0 28.54932 4 TCTAATG 770 0.0 27.747328 2 GTACATG 3625 0.0 27.551695 1 GCGCGGC 245 0.0 27.161905 12-13 TAACGCA 105 6.92602E-5 27.13072 4 GTTATTA 760 0.0 26.864325 8 TACATGG 3735 0.0 26.31353 2 AATGCGG 240 9.094947E-12 25.717663 7 CGCAGAG 2605 0.0 25.15315 8 >>END_MODULE