##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224560_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1225414 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.04632556833854 34.0 33.0 34.0 31.0 34.0 2 33.17744778499348 34.0 33.0 34.0 31.0 34.0 3 33.29324701692652 34.0 34.0 34.0 31.0 34.0 4 36.55569383081963 37.0 37.0 37.0 35.0 37.0 5 36.57424021595967 37.0 37.0 37.0 35.0 37.0 6 36.608323391115164 37.0 37.0 37.0 35.0 37.0 7 36.58139045253278 37.0 37.0 37.0 35.0 37.0 8 36.56143719591909 37.0 37.0 37.0 35.0 37.0 9 38.360135431780606 39.0 39.0 39.0 37.0 39.0 10-11 38.37231417300602 39.0 39.0 39.0 37.0 39.0 12-13 38.36358324615192 39.0 39.0 39.0 37.0 39.0 14-15 39.902722671684835 41.0 40.0 41.0 38.0 41.0 16-17 39.90423603777988 41.0 40.0 41.0 38.0 41.0 18-19 39.87899395632823 41.0 40.0 41.0 38.0 41.0 20-21 39.874806799987596 41.0 40.0 41.0 38.0 41.0 22-23 39.77765677558768 41.0 40.0 41.0 38.0 41.0 24-25 39.735697894752306 41.0 40.0 41.0 37.0 41.0 26-27 39.66203136246199 41.0 40.0 41.0 37.0 41.0 28-29 39.62193511743786 41.0 40.0 41.0 37.0 41.0 30-31 39.565000073444565 41.0 40.0 41.0 37.0 41.0 32-33 39.52339413455371 41.0 39.5 41.0 37.0 41.0 34-35 39.440194089507706 41.0 39.0 41.0 36.0 41.0 36-37 39.32548265320945 41.0 39.0 41.0 36.0 41.0 38-39 39.209096272769855 40.5 39.0 41.0 35.5 41.0 40-41 39.05798448524335 40.0 39.0 41.0 35.0 41.0 42-43 38.949695776284585 40.0 38.5 41.0 35.0 41.0 44-45 38.67923003980695 40.0 38.0 41.0 35.0 41.0 46-47 38.43970731524203 40.0 38.0 41.0 35.0 41.0 48-49 38.350116368835344 40.0 37.5 41.0 35.0 41.0 50-51 38.18897654180546 40.0 37.0 41.0 34.0 41.0 52-53 37.926058050585354 40.0 36.5 41.0 34.0 41.0 54-55 37.72366685871061 39.0 36.0 41.0 34.0 41.0 56-57 37.486775897778216 39.0 35.0 41.0 33.0 41.0 58-59 37.20178894642953 39.0 35.0 41.0 33.0 41.0 60-61 36.92871062351173 38.0 35.0 40.5 33.0 41.0 62-63 36.68481631513921 37.5 35.0 40.0 33.0 41.0 64-65 36.39293944740308 37.0 35.0 40.0 32.0 41.0 66-67 36.07669163237893 36.5 35.0 40.0 32.0 41.0 68-69 35.79581716872828 36.0 35.0 39.0 31.5 41.0 70-71 35.490585222626805 35.5 35.0 39.0 31.0 41.0 72-73 35.17854618928787 35.0 34.0 38.5 31.0 40.0 74-75 34.86391741892944 35.0 34.0 37.0 31.0 40.0 76-77 33.0097946489921 34.5 32.0 35.5 28.0 38.0 78-79 34.46097155736756 35.0 34.0 36.0 31.0 39.0 80-81 34.43646310553005 35.0 34.0 36.0 31.0 38.5 82-83 34.24420481567862 35.0 34.0 36.0 31.0 37.0 84-85 34.04633984922647 35.0 34.0 35.5 31.0 37.0 86-87 33.85840622026515 35.0 34.0 35.0 31.0 36.5 88-89 33.69827584799913 35.0 34.0 35.0 31.0 36.0 90-91 33.545740459958836 35.0 34.0 35.0 30.5 36.0 92-93 33.45582921363719 35.0 34.0 35.0 30.5 36.0 94-95 33.3470435297785 35.0 34.0 35.0 30.0 35.0 96-97 33.28714622160348 35.0 34.0 35.0 30.0 35.0 98-99 33.24185662967781 35.0 34.0 35.0 30.0 35.0 100-101 32.28128575322299 34.5 32.5 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 3.0 14 21.0 15 61.0 16 145.0 17 251.0 18 486.0 19 762.0 20 1142.0 21 1721.0 22 2353.0 23 2602.0 24 2925.0 25 3762.0 26 4990.0 27 6704.0 28 8371.0 29 9731.0 30 11285.0 31 13413.0 32 17172.0 33 24546.0 34 42361.0 35 82939.0 36 204470.0 37 348209.0 38 358684.0 39 76290.0 40 15.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.254020720963645 17.578724007615662 12.647803448357822 24.51945182306287 2 16.480307879622725 19.045563376948525 38.409141726796 26.064987016632745 3 20.726138268372974 24.372416179348367 27.365200658716155 27.5362448935625 4 13.205251449714137 15.721788717935326 37.293192341527025 33.77976749082351 5 14.460011065648018 37.325589555856226 34.02123690442577 14.193162474069986 6 32.56972745537426 35.18386439195243 18.239468457190792 14.006939695482506 7 29.196092096222177 29.74366214193734 21.03248371570751 20.02776204613298 8 26.779357833352645 34.352308689145055 19.488434112879403 19.379899364622894 9 26.905600882640478 15.217958991818275 19.01251332202831 38.86392680351293 10-11 26.88295547463959 24.176727212191146 27.11402024132252 21.82629707184674 12-13 27.339372652834065 22.043937803876894 27.07097356485237 23.545715978436675 14-15 24.0903890440292 24.200719103911005 24.325860484701497 27.383031367358296 16-17 24.144493208009703 26.818120243444255 25.350657002449783 23.68672954609626 18-19 24.019719050051656 26.334936601018104 26.246843923767806 23.398500425162435 20-21 24.810297334472008 25.076454346299528 26.12961679184302 23.983631527385445 22-23 24.971968291118475 25.318263943633006 25.553167215875984 24.15660054937253 24-25 24.67468031107956 25.104128414163423 25.76129621922459 24.459895055532435 26-27 24.44056540412881 26.323110457169115 25.640102857133527 23.596221281568546 28-29 24.196633683566255 26.13016423543813 26.068672855248394 23.60452922574722 30-31 24.21382146562913 25.258128839800374 26.125351975325717 24.402697719244774 32-33 24.23401397405285 25.56654322539158 26.402056774281995 23.79738602627357 34-35 24.84816706926944 25.201818241169942 25.544982698961938 24.40503199059868 36-37 24.011563618261867 25.36932988954582 26.171724219537374 24.44738227265494 38-39 24.271878728331814 25.626318942006538 25.584985972087797 24.51681635757385 40-41 24.404772591140627 25.55409845162533 26.04075030969126 24.00037864754279 42-43 24.436598569952686 25.581966584354348 26.103423006428848 23.87801183926412 44-45 24.61380323174173 25.197979783965668 25.91816223508332 24.270054749209287 46-47 24.264681563109804 25.145761136706163 25.881641017851475 24.707916282332555 48-49 23.9062382691749 25.24028810090386 26.324869185999066 24.528604443922166 50-51 24.27253156892283 25.42059255076244 25.89973674203167 24.407139138283064 52-53 24.39073651843377 25.571806752656652 25.400599307662553 24.636857421247026 54-55 24.524446431981357 24.88738499804964 25.842653992854657 24.745514577114346 56-57 24.608921678241778 25.30550953620657 25.4912554169081 24.59431336864355 58-59 24.647947977244332 25.523552248687775 25.827856469638355 24.000643304429534 60-61 24.472417124439154 25.742860769547555 25.50356333994398 24.281158766069314 62-63 24.247029983336244 25.252853321408114 25.910835032078953 24.589281663176692 64-65 24.505799672600443 24.95458677638741 25.703680552042 24.835932998970144 66-67 24.051585831400654 25.322748067183827 25.469759607773373 25.15590649364215 68-69 24.48776495127361 25.179204742234052 26.059193056387475 24.27383725010486 70-71 24.799088308114644 25.124366132588662 25.856975683320087 24.21956987597661 72-73 24.09965121991425 25.366447584245 26.045360996365307 24.48854019947544 74-75 24.273674039957108 25.13913665096041 26.06086596040195 24.526323348680528 76-77 24.25789214480197 24.74405536425927 25.938144043857918 25.059908447080836 78-79 24.377139466814977 24.56753645637171 25.798547253831504 25.25677682298181 80-81 23.95809020472585 25.42326820342989 25.637819848434646 24.980821743409617 82-83 23.830253601973876 25.392186824840284 26.07722592825471 24.70033364493112 84-85 24.278183790823967 24.885496432385057 26.201884529808055 24.634435246982918 86-87 23.694318817966824 25.995418691152537 25.894718029988233 24.4155444608924 88-89 24.365275735384124 24.961645615277774 25.260932223721944 25.41214642561616 90-91 24.18101147856969 25.0959267643425 25.43899449492172 25.284067262166094 92-93 24.063305977941322 25.314230665811987 25.98988015065935 24.632583205587338 94-95 24.199250212581216 24.960013513800234 25.687114722044956 25.15362155157359 96-97 24.480706112383245 25.259871357761536 25.800504972197153 24.458917557658065 98-99 23.087911513986292 25.52308852355204 26.10481029268476 25.284189669776907 100-101 23.84708916246664 25.128368866140345 25.697699486197894 25.326842485195115 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2.0 1 1.5 2 1.5 3 3.0 4 2.0 5 1.0 6 1.5 7 8.5 8 15.0 9 21.5 10 33.0 11 35.5 12 38.0 13 46.0 14 44.5 15 43.5 16 51.5 17 68.0 18 73.0 19 78.0 20 106.5 21 131.0 22 156.0 23 197.0 24 259.0 25 341.0 26 463.5 27 606.5 28 750.5 29 948.0 30 1297.5 31 2081.5 32 3711.5 33 6947.0 34 11825.0 35 18067.0 36 26102.0 37 33741.0 38 38188.0 39 39315.5 40 38104.5 41 36195.0 42 35012.0 43 34733.0 44 35012.0 45 36343.5 46 38818.5 47 41212.5 48 44002.5 49 48826.5 50 54156.5 51 55286.5 52 53900.5 53 56409.0 54 60705.0 55 60118.0 56 51870.5 57 45262.0 58 43319.5 59 40848.0 60 34294.0 61 25979.0 62 21081.5 63 15192.5 64 9380.5 65 6189.0 66 4643.0 67 3973.0 68 2950.5 69 1797.0 70 1085.0 71 751.0 72 593.0 73 466.5 74 362.5 75 252.5 76 191.0 77 130.0 78 70.0 79 39.0 80 19.5 81 9.5 82 6.5 83 6.5 84 5.5 85 4.0 86 1.5 87 1.5 88 1.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4322620763268577 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 7.752482018321971E-4 22-23 0.001305681182033174 24-25 3.264202955082935E-4 26-27 0.0020401268469268344 28-29 0.0031825978812058623 30-31 6.936431279551237E-4 32-33 0.0 34-35 0.004406673989361963 36-37 0.0015504964036643942 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.008119704850768801 46-47 0.07291413350916508 48-49 8.160507387707337E-4 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.006854826205674165 58-59 0.039864078588950344 60-61 0.030153074797578613 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 2.0401268469268343E-4 78-79 0.006487603373227334 80-81 0.0055491450236409895 82-83 7.752482018321971E-4 84-85 0.0012648786450946373 86-87 0.0 88-89 0.0 90-91 0.0 92-93 4.080253693853669E-5 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06675295043144602 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1225414.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.94207433218731 #Duplication Level Percentage of deduplicated Percentage of total 1 70.96303859778264 33.311522326949905 2 15.702094955011356 14.74177817098413 3 5.697936073029122 8.024188160405535 4 2.7065743398891655 5.08208855394672 5 1.4348847500547104 3.367823329759511 6 0.8576013336289154 2.415455133035491 7 0.5429336510517014 1.7840502263580373 8 0.38609143597696666 1.4499146309321365 9 0.26933727595878915 1.1378925385637695 >10 1.2313053867158008 10.117556136328258 >50 0.0995101710265788 3.2949791052298463 >100 0.09493134477922308 9.399548008425871 >500 0.010276967349587109 3.335499557013829 >1k 0.0034837177456227488 2.5377041220670504 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 3852 0.3143427445744867 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 2231 0.18206091981975073 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 2199 0.17944955745568436 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 2142 0.17479806824469118 No Hit GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 1754 0.14313529958038673 No Hit CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG 1490 0.12159156007683933 No Hit ATATACACCAGATTCAGACAGCCAATCACCCGTTGTTCACTGCGCAGCGG 1411 0.11514475924055054 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 1382 0.11277821209811541 No Hit GTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCC 1351 0.11024845480792614 No Hit TCATTTAGGTGAGAAAACCCTCTCTACTTTGGCGCGACTGCGTGAACGCG 1304 0.10641301633570369 No Hit ACATTACCCTCACTTTTGCCACGGGGCGTCATGCGCTGGAGATGCAGCAT 1302 0.10624980618794955 No Hit TCCTTTCACCGGGCAATGGTCGGGCGACGTTTGCCGCTTCTGAAAACCGC 1294 0.10559696559693296 No Hit GAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCAT 1287 0.10502573007979345 No Hit GGCCTGACCTGGCTGGCCTTTTGCCCGGAACAAGACCGCAAGGAATTAAT 1265 0.10323041845449782 No Hit GGTCAGGCCCGAGGCGGTTTTCAGAAGCGGCAAACGTCGCCCGACCATTG 1260 0.10282239308511247 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 1.6321014775414676E-4 1.6321014775414676E-4 9 0.0 0.0 0.0 1.6321014775414676E-4 1.6321014775414676E-4 10-11 0.0 0.0 0.0 1.6321014775414676E-4 1.6321014775414676E-4 12-13 0.0 0.0 0.0 2.4481522163122016E-4 1.6321014775414676E-4 14-15 0.0 0.0 0.0 3.264202955082935E-4 2.448152216312201E-4 16-17 0.0 0.0 0.0 3.264202955082935E-4 3.264202955082935E-4 18-19 0.0 0.0 0.0 4.488279063239036E-4 3.264202955082935E-4 20-21 0.0 0.0 0.0 5.712355171395136E-4 3.672228324468302E-4 22-23 0.0 0.0 0.0 5.712355171395136E-4 4.896304432624403E-4 24-25 0.0 0.0 0.0 5.712355171395136E-4 4.896304432624403E-4 26-27 0.0 0.0 0.0 5.712355171395136E-4 4.896304432624403E-4 28-29 0.0 0.0 0.0 0.0015504964036643942 5.30432980200977E-4 30-31 0.0 0.0 0.0 0.004080253693853669 5.712355171395136E-4 32-33 0.0 0.0 0.0 0.009629398717494658 5.712355171395136E-4 34-35 0.0 0.0 0.0 0.01689225029255419 5.712355171395136E-4 36-37 0.0 0.0 0.0 0.03109153314716496 5.712355171395136E-4 38-39 0.0 0.0 0.0 0.058470035432923076 6.120380540780503E-4 40-41 0.0 0.0 0.0 0.09123447259456804 6.52840591016587E-4 42-43 0.0 0.0 0.0 0.12310125394356519 6.52840591016587E-4 44-45 0.0 0.0 0.0 0.15888507883866188 6.52840591016587E-4 46-47 0.0 0.0 0.0 0.20311502888003563 6.52840591016587E-4 48-49 0.0 0.0 0.0 0.25285332140811184 6.52840591016587E-4 50-51 0.0 0.0 0.0 0.30703909046248856 6.52840591016587E-4 52-53 0.0 0.0 0.0 0.36404023456562434 6.936431279551238E-4 54-55 0.0 0.0 0.0 0.4264273135446469 7.752482018321971E-4 56-57 0.0 0.0 0.0 0.5058290504270393 8.568532757092705E-4 58-59 0.0 0.0 0.0 0.5897598689096093 8.976558126478071E-4 60-61 0.0 0.0 0.0 0.6861762636953715 8.976558126478071E-4 62-63 0.0 0.0 0.0 0.7875297654506968 8.976558126478071E-4 64-65 0.0 0.0 0.0 0.8885160443735749 8.976558126478071E-4 66-67 0.0 0.0 0.0 1.0085979105836884 8.976558126478071E-4 68-69 0.0 0.0 0.0 1.1452456067908479 8.976558126478071E-4 70-71 0.0 0.0 0.0 1.2992343811968854 9.384583495863439E-4 72-73 0.0 0.0 0.0 1.4679120689007958 0.0015504964036643942 74-75 0.0 0.0 0.0 1.6401803798552979 0.0015504964036643942 76-77 0.0 0.0 0.0 1.8223229047489258 0.0015504964036643942 78-79 0.0 0.0 0.0 2.031272696411172 0.0015504964036643942 80-81 0.0 0.0 0.0 2.2726197024026167 0.0015504964036643942 82-83 0.0 0.0 0.0 2.529757290189275 0.001713706551418541 84-85 0.0 0.0 0.0 2.788118954084089 0.001713706551418541 86-87 0.0 0.0 0.0 3.0575789080261853 0.001713706551418541 88-89 0.0 0.0 0.0 3.3614354006074683 0.0017953116252956143 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1015 0.0 46.53629 1 GTATCAA 1805 0.0 44.407326 1 ATCAACG 2250 0.0 35.45884 3 CCGTGCG 225 0.0 33.77032 9 TCAACGC 2400 0.0 33.24266 4 AAACCGT 200 0.0 33.242657 6 TCGCACC 1405 0.0 31.24166 1 CAACGCA 2690 0.0 29.65888 5 ACCGTGC 245 0.0 29.075212 8 CGCACCA 1525 0.0 28.96082 2 AACGCAG 2790 0.0 28.595837 6 GACCGCA 1155 0.0 28.37036 7 GTACATG 4870 0.0 28.215393 1 ACGCAGA 2845 0.0 28.209938 7 CGCAGAG 2845 0.0 28.043015 8 ACCGCAA 1135 0.0 28.033457 8 CTGTGCG 1730 0.0 26.901573 9 CCGCAAG 1205 0.0 26.799063 9 AGACCGC 1285 0.0 26.60891 6 TACATGG 5235 0.0 26.126036 2 >>END_MODULE