##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224558_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 829871 Sequences flagged as poor quality 0 Sequence length 101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.106976867489045 34.0 31.0 34.0 30.0 34.0 2 32.27658154098649 34.0 31.0 34.0 31.0 34.0 3 32.4189265560551 34.0 31.0 34.0 31.0 34.0 4 35.71487255248105 37.0 35.0 37.0 35.0 37.0 5 35.728926544005034 37.0 37.0 37.0 35.0 37.0 6 35.825721106051425 37.0 37.0 37.0 35.0 37.0 7 35.787465762751076 37.0 37.0 37.0 35.0 37.0 8 35.824969181957194 37.0 37.0 37.0 35.0 37.0 9 37.534270989105536 39.0 38.0 39.0 35.0 39.0 10-11 37.60666115577 39.0 38.5 39.0 35.0 39.0 12-13 37.61582402566182 39.0 38.5 39.0 35.0 39.0 14-15 39.09420500294624 41.0 40.0 41.0 36.0 41.0 16-17 38.93240093942312 41.0 39.5 41.0 35.5 41.0 18-19 39.01919695952745 41.0 39.5 41.0 36.0 41.0 20-21 39.0871141418365 41.0 40.0 41.0 36.0 41.0 22-23 39.039768229038 41.0 40.0 41.0 36.0 41.0 24-25 38.981221780252596 41.0 39.0 41.0 35.5 41.0 26-27 38.81574244671762 41.0 39.0 41.0 35.0 41.0 28-29 38.72823728025199 41.0 39.0 41.0 35.0 41.0 30-31 38.635553598089345 41.0 39.0 41.0 35.0 41.0 32-33 38.443593642867384 40.5 39.0 41.0 34.0 41.0 34-35 38.44250130441961 40.0 38.0 41.0 34.0 41.0 36-37 38.45197627101079 40.0 38.0 41.0 34.0 41.0 38-39 38.350723787191015 40.0 38.0 41.0 34.0 41.0 40-41 38.26224979545013 40.0 38.0 41.0 34.0 41.0 42-43 38.12212018494441 40.0 38.0 41.0 33.0 41.0 44-45 37.96102828029899 40.0 38.0 41.0 33.0 41.0 46-47 37.78932448537182 40.0 38.0 41.0 33.0 41.0 48-49 37.59366877502648 40.0 37.0 41.0 32.0 41.0 50-51 36.34031674802469 38.5 35.5 40.0 30.5 40.5 52-53 36.70277187659287 39.0 36.0 40.0 31.0 40.5 54-55 37.20308999832504 40.0 36.0 41.0 32.0 41.0 56-57 37.076766750494954 40.0 35.5 41.0 31.0 41.0 58-59 36.951781662451154 39.5 35.0 41.0 31.0 41.0 60-61 36.71956665554043 39.0 35.0 41.0 31.0 41.0 62-63 36.43221958593564 39.0 35.0 41.0 31.0 41.0 64-65 36.17116395198772 38.0 35.0 41.0 30.0 41.0 66-67 35.90625229704376 37.5 35.0 40.0 30.0 41.0 68-69 35.5764667038612 37.0 35.0 40.0 29.5 41.0 70-71 35.26100683118219 36.5 35.0 39.5 29.0 41.0 72-73 34.914488516889975 36.0 34.5 39.0 29.0 41.0 74-75 34.61047620654294 35.5 34.0 39.0 29.0 40.5 76-77 34.23627889153856 35.0 34.0 37.5 28.5 39.5 78-79 33.96566454304344 35.0 34.0 37.0 28.5 39.0 80-81 33.63755933151056 35.0 34.0 36.5 28.0 39.0 82-83 33.355206411598914 35.0 34.0 36.0 27.0 37.5 84-85 33.11504800143637 35.0 34.0 36.0 27.0 37.0 86-87 32.870341896511626 35.0 34.0 35.0 27.0 37.0 88-89 32.70380577222243 35.0 33.0 35.0 26.5 36.0 90-91 32.52820257606302 35.0 33.0 35.0 26.0 36.0 92-93 32.38432539515178 35.0 33.0 35.0 25.5 36.0 94-95 32.24501699661755 35.0 33.0 35.0 25.0 35.5 96-97 32.11790748200624 35.0 33.0 35.0 25.0 35.0 98-99 32.05378848037827 35.0 33.0 35.0 25.0 35.0 100-101 30.887338514058207 34.0 31.0 35.0 21.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 3.0 7 85.0 8 283.0 9 240.0 10 401.0 11 869.0 12 1537.0 13 1782.0 14 1895.0 15 2016.0 16 2117.0 17 2298.0 18 2583.0 19 2921.0 20 3400.0 21 4182.0 22 4934.0 23 4872.0 24 4641.0 25 4894.0 26 5145.0 27 5451.0 28 6060.0 29 6950.0 30 8345.0 31 10555.0 32 13729.0 33 18939.0 34 29471.0 35 50930.0 36 103918.0 37 197122.0 38 255284.0 39 72004.0 40 15.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.9475953757644 19.905116034328156 14.510657248268446 23.636631341639 2 15.192361222406856 20.788170691589418 39.57205396983387 24.447414116169863 3 18.44001884634804 27.137054161560435 29.23160161423068 25.191325377860842 4 12.429763180060515 18.123780683985824 40.057792114678065 29.388664021275595 5 13.735508289842638 38.470195970217056 34.523678981432056 13.27061675850825 6 28.559017003847586 38.170751839743765 19.988889839505177 13.28134131690347 7 26.126229257318307 32.06016356759063 23.60957305412528 18.20403412096579 8 25.354181553518558 34.31003131812053 21.5502168409307 18.785570287430215 9 26.031154239634834 16.360494582893004 21.00772288705112 36.60062829042104 10-11 24.89163978497863 25.868056601568195 28.68012016325429 20.560183450198885 12-13 26.0173569145084 23.316997461051177 28.48948812526284 22.17615749917758 14-15 23.134391330291542 24.9650113615131 25.97868736852891 25.92190993966645 16-17 22.995896346264928 27.465840067240592 26.579569037974775 22.958694548519706 18-19 22.776406379573025 27.12590158717914 27.59133994175843 22.506352091489404 20-21 24.280510819687546 25.762676312295103 27.037615901544186 22.919196966473162 22-23 23.88671778442038 26.463867690307925 26.615798110998433 23.03361641427326 24-25 23.213117085499206 26.33028694980397 26.966640834877015 23.48995512981981 26-27 23.09780676755785 26.868392798398787 27.16066713983258 22.87313329421079 28-29 23.046352987392016 26.9174365654421 27.077702438089773 22.95850800907611 30-31 23.393575628019295 26.187503840958414 27.189647547630898 23.229272983391393 32-33 23.159804355134714 26.313969279562727 27.32683754463043 23.19938882067213 34-35 23.514377535785684 26.26004523594631 27.018054613307367 23.207522614960638 36-37 23.106373336579523 26.34293972093225 27.421112197191484 23.129574745296743 38-39 23.136180027668384 26.514229454778583 27.051870990132894 23.297719527420142 40-41 23.66187847967029 26.125364536887517 27.187161071075653 23.025595912366537 42-43 23.411306148591205 26.433212165470355 27.108281651715 23.047200034223444 44-45 23.518335068741443 26.33445652802684 26.73438373729778 23.41282466593394 46-47 23.481541106991326 26.157981180207525 26.5606341226528 23.79984359014835 48-49 23.28217277143074 26.312704022673405 26.77126926956117 23.633853936334685 50-51 23.36152245348976 26.562622383478878 26.51731413677548 23.558541026255888 52-53 23.65325454197098 26.513156864139127 26.101044620187956 23.732543973701937 54-55 23.579929892718265 26.165271469903157 26.49935953901269 23.75543909836589 56-57 23.500654620208817 26.552275324885027 26.398877897214085 23.548192157692075 58-59 23.832735647865537 26.430031028221883 26.47829982940203 23.258933494510554 60-61 23.677293155875663 26.58050496613914 26.31782567351115 23.424376204474047 62-63 23.438791038254656 26.462461014599747 26.64904853023158 23.44969941691401 64-65 24.004395572599886 26.123155601582216 26.167702065533334 23.704746760284568 66-67 23.45085920758619 26.392461053032477 26.103085626682798 24.05359411269853 68-69 23.52052306924811 26.443929237194695 26.696016609810442 23.33953108374675 70-71 23.737062748306663 26.00289683577327 26.592446295870083 23.667594120049984 72-73 23.52010131695167 26.163765211701577 26.72638277515421 23.589750696192542 74-75 23.541490183414048 26.072967967310586 26.64203231586596 23.74350953340941 76-77 23.521969077121625 25.95282881315289 26.168464737290492 24.356737372434992 78-79 23.50164933369811 25.667718013953955 26.568192747270498 24.26243990507744 80-81 23.34749045223404 26.26508275735261 26.42664874168433 23.960778048729026 82-83 23.394284708466603 26.448263265574308 26.53615187730798 23.62130014865111 84-85 23.482238642253588 25.899519051120407 26.817781849302687 23.80046045732332 86-87 23.312297590253948 26.50159998649597 26.459821891480644 23.72628053176944 88-89 23.57240969468598 26.151700511759746 26.253919865089742 24.021969928464536 90-91 23.28494428652164 26.146051615251043 26.46700511284284 24.101998985384476 92-93 23.38140679961583 25.996727083863053 26.814594603062513 23.807271513458602 94-95 23.53636890552869 25.949756046421673 26.72565977121745 23.788215276832183 96-97 23.365619475798045 26.50707158100476 26.620281947435203 23.507026995761994 98-99 22.848136196138636 26.547666961494805 26.677869332491426 23.926327509875136 100-101 23.40259317528346 26.06225549587997 26.413196139773476 24.121955189063094 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2.0 1 1.5 2 1.5 3 3.0 4 4.0 5 4.5 6 5.0 7 12.5 8 21.5 9 22.5 10 28.5 11 41.5 12 53.0 13 56.5 14 65.0 15 79.0 16 85.0 17 105.5 18 122.0 19 139.0 20 186.5 21 222.5 22 272.5 23 355.5 24 467.5 25 696.0 26 998.0 27 1402.0 28 1919.0 29 2608.5 30 3712.0 31 5460.0 32 7955.5 33 11013.5 34 14421.0 35 17693.5 36 20789.5 37 23473.0 38 24900.0 39 25782.0 40 26584.0 41 27194.0 42 28080.5 43 29288.5 44 30515.5 45 31960.5 46 33655.5 47 34094.5 48 34646.5 49 36158.5 50 37707.5 51 36896.0 52 34505.0 53 33529.0 54 32872.0 55 31656.5 56 27401.5 57 22606.0 58 20272.5 59 18287.0 60 14982.5 61 11440.0 62 8961.5 63 6542.5 64 4195.0 65 2696.5 66 2123.0 67 1736.5 68 1262.5 69 816.0 70 525.5 71 385.0 72 275.0 73 208.0 74 173.0 75 126.5 76 76.5 77 55.5 78 43.0 79 31.5 80 22.0 81 18.0 82 14.5 83 6.5 84 5.5 85 6.0 86 7.0 87 5.5 88 3.0 89 4.0 90 3.5 91 3.0 92 2.0 93 4.0 94 6.0 95 3.0 96 2.0 97 4.0 98 3.5 99 1.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.15424083984137293 2 0.0 3 2.4100131225214522E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.03807820733583894 16-17 0.07350540023690429 18-19 0.026871646316114193 20-21 0.04115097406705379 22-23 0.06555235693258349 24-25 0.017352094482154454 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.02169011810269307 38-39 0.005181528213421122 40-41 0.006145533462429704 42-43 0.003675270011845215 44-45 0.011447562331976897 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 6.0250328063036305E-5 58-59 0.017171343497965348 60-61 0.018316099731163035 62-63 0.028136903205437956 64-65 0.04820026245042904 66-67 0.018436600387289108 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.01711109316990231 80-81 0.05886457051758647 82-83 0.04964627032394191 84-85 0.03145067124890495 86-87 0.058924820845649505 88-89 0.03404143535561551 90-91 0.0 92-93 0.003615019683782178 94-95 0.0 96-97 0.0 98-99 0.0010845059051346534 100-101 0.046513253264664024 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 829871.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 64.60813661555392 #Duplication Level Percentage of deduplicated Percentage of total 1 79.6405789942098 51.45429407799721 2 13.192791133950402 17.047233038454728 3 3.7681048249344 7.3035069393326895 4 1.4239828218077772 3.6800350675823545 5 0.6376621337036958 2.0599081124446994 6 0.3497759135556454 1.3559022004699992 7 0.20391325693359472 0.9222118893181765 8 0.1252526537752111 0.6473872453255612 9 0.10045283530006528 0.5841063455837721 >10 0.4547566981290721 5.491289400181777 >50 0.0531500555483207 2.4486123071395016 >100 0.04657390980422303 5.5644436815035485 >500 0.002441374282623302 1.0354541360848397 >1k 5.633940652207619E-4 0.40561555858115994 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 1217 0.14664929850543035 No Hit TAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCATCGCA 1068 0.12869470074264555 No Hit GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 1058 0.1274896941813848 No Hit ATACAAAACCGTGCGCGGCTTAACCCGCGGTCTAATGTTATTAAATATGT 935 0.11266811347787789 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 922 0.11110160494823894 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 848 0.10218455639490957 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 0.0 0.0 20-21 0.0 0.0 0.0 6.0250328063036305E-5 0.0 22-23 0.0 0.0 0.0 3.012516403151815E-4 0.0 24-25 0.0 0.0 0.0 4.8200262450429044E-4 0.0 26-27 0.0 0.0 0.0 6.02503280630363E-4 0.0 28-29 0.0 0.0 0.0 6.627536086933994E-4 0.0 30-31 0.0 0.0 0.0 0.001807509841891089 0.0 32-33 0.0 0.0 0.0 0.004097022308286468 0.0 34-35 0.0 0.0 0.0 0.007591541335942574 0.0 36-37 0.0 0.0 0.0 0.013255072173867986 0.0 38-39 0.0 0.0 0.0 0.02560638942679043 0.0 40-41 0.0 0.0 0.0 0.04229573030025148 0.0 42-43 0.0 0.0 0.0 0.057599313628262705 0.0 44-45 0.0 0.0 0.0 0.07597566368748879 0.0 46-47 0.0 0.0 0.0 0.09513526801153432 0.0 48-49 0.0 0.0 0.0 0.11574088020909273 0.0 50-51 0.0 0.0 0.0 0.1418895225884505 0.0 52-53 0.0 0.0 0.0 0.1694841728413211 0.0 54-55 0.0 0.0 0.0 0.20021184015346963 0.0 56-57 0.0 0.0 0.0 0.23377127288458086 0.0 58-59 0.0 0.0 0.0 0.27606700318483235 0.0 60-61 0.0 0.0 0.0 0.320230493655038 0.0 62-63 0.0 0.0 0.0 0.37132277185249274 0.0 64-65 0.0 0.0 0.0 0.4196435349590478 0.0 66-67 0.0 0.0 0.0 0.47778510153987785 0.0 68-69 0.0 0.0 0.0 0.542614454535705 0.0 70-71 0.0 0.0 0.0 0.6237113961085519 0.0 72-73 0.0 0.0 0.0 0.7125806300015304 0.0 74-75 0.0 0.0 0.0 0.799943605692933 0.0 76-77 0.0 0.0 0.0 0.889475593194605 0.0 78-79 0.0 0.0 0.0 0.9917203999175775 0.0 80-81 0.0 0.0 0.0 1.122102109845988 0.0 82-83 0.0 0.0 0.0 1.2598343597980892 0.0 84-85 0.0 0.0 0.0 1.4009406281217203 0.0 86-87 0.0 0.0 0.0 1.5554827196034082 0.0 88-89 0.0 0.0 0.0 1.7320161808281047 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 680 0.0 51.032078 1 CCGTGCG 265 0.0 50.197216 9 GTATCAA 1365 0.0 46.31784 1 ACCGTGC 320 0.0 46.00404 8 AAACCGT 280 0.0 44.09604 6 AACCGTG 320 0.0 40.068035 7 ATCAACG 1785 0.0 35.383244 3 TCAACGC 1865 0.0 33.865463 4 GCGTTAT 60 0.003935403 31.691154 1 TATCAAC 2065 0.0 30.125584 2 CGCAGAG 2165 0.0 29.392134 8 TGCGCGG 215 0.0 28.727547 12-13 ACGCAGA 2225 0.0 28.59954 7 CAACGCA 2375 0.0 26.593304 5 AACGCAG 2440 0.0 26.27412 6 GTCTAAT 575 0.0 24.801773 1 GTACATG 3095 0.0 24.574722 1 CCCATAA 705 0.0 24.249212 2 TACATGG 3040 0.0 24.056442 2 GCCCATA 715 0.0 23.934578 1 >>END_MODULE