##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224558_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 829871 Sequences flagged as poor quality 0 Sequence length 101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.13284715335275 34.0 33.0 34.0 31.0 34.0 2 33.26820554037917 34.0 33.0 34.0 31.0 34.0 3 33.38643114411758 34.0 34.0 34.0 31.0 34.0 4 36.61170109571247 37.0 37.0 37.0 35.0 37.0 5 36.64428206311583 37.0 37.0 37.0 35.0 37.0 6 36.67330585115036 37.0 37.0 37.0 35.0 37.0 7 36.64754763089685 37.0 37.0 37.0 35.0 37.0 8 36.6330104317418 37.0 37.0 37.0 35.0 37.0 9 38.466494190060864 39.0 39.0 39.0 37.0 39.0 10-11 38.49198007883153 39.0 39.0 39.0 37.0 39.0 12-13 38.489066372966406 39.0 39.0 39.0 37.0 39.0 14-15 40.077060772095905 41.0 40.0 41.0 38.0 41.0 16-17 40.0878015980797 41.0 40.0 41.0 38.0 41.0 18-19 40.0813536079704 41.0 40.0 41.0 38.0 41.0 20-21 40.088718608072824 41.0 40.0 41.0 38.0 41.0 22-23 40.006857089836856 41.0 40.0 41.0 38.0 41.0 24-25 39.96298340344463 41.0 40.0 41.0 38.0 41.0 26-27 39.90339402148045 41.0 40.0 41.0 38.0 41.0 28-29 39.87107634801072 41.0 40.0 41.0 38.0 41.0 30-31 39.80134563082696 41.0 40.0 41.0 38.0 41.0 32-33 39.74502000913395 41.0 40.0 41.0 37.0 41.0 34-35 39.66356397560585 41.0 40.0 41.0 37.0 41.0 36-37 39.55793490795557 41.0 40.0 41.0 37.0 41.0 38-39 39.46153438305471 41.0 40.0 41.0 36.5 41.0 40-41 39.33571784048364 41.0 39.0 41.0 36.0 41.0 42-43 39.24592255904834 41.0 39.0 41.0 35.5 41.0 44-45 39.017627438481405 41.0 39.0 41.0 35.0 41.0 46-47 38.79690216913231 40.5 39.0 41.0 35.0 41.0 48-49 38.71030798762699 40.0 38.0 41.0 35.0 41.0 50-51 38.57390726992509 40.0 38.0 41.0 35.0 41.0 52-53 38.36797225110891 40.0 37.5 41.0 35.0 41.0 54-55 38.203479215444325 40.0 37.0 41.0 34.5 41.0 56-57 38.00848445119784 40.0 37.0 41.0 34.0 41.0 58-59 37.769420789496195 40.0 36.0 41.0 34.0 41.0 60-61 37.5338739394436 39.0 35.5 41.0 34.0 41.0 62-63 37.31973583846164 39.0 35.0 41.0 33.5 41.0 64-65 37.04084670991034 39.0 35.0 41.0 33.0 41.0 66-67 36.733414590942445 38.0 35.0 40.5 33.0 41.0 68-69 36.449097510335946 37.0 35.0 40.0 33.0 41.0 70-71 36.12870253328529 37.0 35.0 39.5 32.5 41.0 72-73 35.78510635990413 36.0 35.0 39.0 32.0 41.0 74-75 35.43798373482144 36.0 35.0 39.0 32.0 40.5 76-77 33.56568370264776 34.5 32.5 36.5 28.5 39.0 78-79 34.84893917247379 35.0 34.5 37.0 31.5 39.0 80-81 34.7484524703237 35.0 35.0 37.0 32.0 39.0 82-83 34.51063358039984 35.0 35.0 36.0 32.0 38.0 84-85 34.27669782411965 35.0 35.0 36.0 32.0 37.0 86-87 34.05523750076819 35.0 35.0 36.0 32.0 37.0 88-89 33.885042976559006 35.0 34.0 35.0 31.0 36.5 90-91 33.73399239158857 35.0 34.0 35.0 31.0 36.0 92-93 33.626896228449965 35.0 34.0 35.0 31.0 36.0 94-95 33.5222528561668 35.0 34.0 35.0 31.0 36.0 96-97 33.469813983137136 35.0 34.0 35.0 31.0 35.5 98-99 33.42488712101037 35.0 34.0 35.0 31.0 35.0 100-101 32.601955002644985 34.5 33.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 0.0 13 3.0 14 13.0 15 42.0 16 137.0 17 317.0 18 542.0 19 898.0 20 1314.0 21 2040.0 22 2712.0 23 2616.0 24 2239.0 25 2377.0 26 3062.0 27 3859.0 28 4852.0 29 5701.0 30 6402.0 31 7495.0 32 9164.0 33 12421.0 34 20038.0 35 37470.0 36 93810.0 37 209525.0 38 304922.0 39 95872.0 40 27.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.19560157996324 20.02477471477595 14.484005415079398 23.295618290181412 2 15.091140671260955 20.89083725060883 40.00513332795097 24.012888750179247 3 18.30766468523421 27.50053924043616 29.474821990405736 24.716974083923887 4 12.368669347404596 18.23379778302893 40.46544583435257 28.932087035213904 5 13.648506816119612 38.163762801688456 34.91554711515404 13.27218326703789 6 28.50141769021932 37.9527661528117 20.281706433891532 13.264109723077441 7 26.041878798030055 32.052451525598556 23.785142510100968 18.12052716627042 8 25.441544529209963 34.24206894806542 21.524670701831973 18.791715820892644 9 26.144424856393343 16.347842013999767 21.163650736078257 36.34408239352863 10-11 24.98032826788742 25.95487732430703 28.753746064147318 20.311048343658232 12-13 26.05447111659523 23.59432972112533 28.565765040590644 21.785434121688795 14-15 23.207884116929016 25.144329660875 26.2939661706458 25.35382005155018 16-17 22.725278989144098 27.65700934241587 26.775486792525587 22.84222487591445 18-19 22.633216487863777 27.112948880006655 28.15009802728376 22.103736604845814 20-21 24.112652600857253 25.83691726686758 27.59546478265637 22.454965349618792 22-23 23.81504109126841 26.416262984117804 27.06058853300557 22.708107391608223 24-25 23.365898772996893 26.215088553293146 27.280077843752164 23.138934829957794 26-27 23.07700650301773 26.958572408960464 27.337859878736463 22.62656120928534 28-29 23.013596777167344 26.80130484714321 27.586526862763293 22.598571512926156 30-31 23.275695340257766 26.127188387005816 27.528442930674746 23.068673342061675 32-33 23.19080096882644 26.2753804812802 27.762119368093796 22.77169918179956 34-35 23.54777115733039 26.377123686412922 27.21554185673925 22.859563299517436 36-37 23.121064431407305 26.351521928923425 27.492147691484558 23.035265948184705 38-39 23.10829032464082 26.514663122340703 27.14903882651641 23.22800772650207 40-41 23.440209381940086 26.35222823788276 27.369916529195503 22.83764585098166 42-43 23.256265130363634 26.39524697211976 27.464871046222843 22.883616851293755 44-45 23.532881777925603 26.347782021779985 27.1617145608241 22.957621639470304 46-47 23.391491963640707 26.154137455693593 26.858818889755888 23.595551690909815 48-49 23.24371613145784 26.06641096180936 27.169303848948562 23.52056905778424 50-51 23.517570803173022 26.247754169021448 26.879177607122074 23.355497420683456 52-53 23.652063785855745 26.4047221825574 26.49527848019661 23.44793555139025 54-55 23.636384450113333 26.058086136279012 26.869838806272302 23.435690607335356 56-57 23.662150729933167 26.455588200558687 26.414735081380858 23.46752598812729 58-59 23.858716453445446 26.224673387279058 26.77696909422419 23.139641065051308 60-61 23.57993069157752 26.490583094771736 26.676329667018233 23.253156546632514 62-63 23.41749500826032 26.301858963622056 26.857728490331628 23.42291753778599 64-65 23.759897622642555 26.170452998116573 26.571177930063826 23.498471449177043 66-67 23.490156903904342 26.231004577819927 26.58129998517842 23.697538533097312 68-69 23.711637109864064 26.30788399642836 26.77175127218568 23.2087276215219 70-71 23.950830912274316 26.059592394480585 26.641128560945017 23.34844813230008 72-73 23.560288285769715 26.120505476152317 26.813745750845612 23.50546048723235 74-75 23.72049390808933 25.884203689489087 26.739216095031637 23.65608630738994 76-77 23.564300480017543 25.81436389390811 26.5631599337483 24.058175692326046 78-79 23.491447357321384 25.720834608737984 26.67353175817846 24.11418627576217 80-81 23.33850915771442 26.20389132817438 26.618800835603405 23.838798678507796 82-83 23.39821741983179 26.278205658875635 26.804375895100947 23.519201026191624 84-85 23.582437035193774 25.894726567560223 26.90864657826097 23.614189818985032 86-87 23.233008503731302 26.438265706356773 26.725057267936826 23.603668521975102 88-89 23.593847718500825 26.043324805903566 26.276614076163646 24.086213399431962 90-91 23.539803174228283 26.187503840958414 26.402416761159266 23.870276223654038 92-93 23.627013869642234 26.109149625845014 26.680624676154096 23.583211828358657 94-95 23.52937986747338 26.01663391057164 26.57238293662509 23.881603285329888 96-97 23.303079635268613 26.49538301736053 26.710898440842012 23.490638906528847 98-99 22.644965301836066 26.676857005486394 26.83983414289691 23.838343549780628 100-101 23.328632573192884 26.149872452440228 26.65656576009724 23.86492921426965 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4.0 1 2.5 2 4.0 3 6.5 4 4.0 5 3.0 6 7.5 7 13.5 8 21.0 9 31.0 10 40.0 11 45.0 12 52.0 13 75.5 14 93.0 15 104.5 16 113.0 17 116.5 18 138.5 19 160.0 20 198.5 21 257.0 22 319.0 23 426.5 24 604.0 25 830.0 26 1132.5 27 1574.5 28 2121.5 29 2949.0 30 4273.0 31 6225.0 32 8817.0 33 11916.0 34 15152.0 35 18074.0 36 21023.0 37 23520.5 38 24745.5 39 25497.5 40 26294.0 41 27154.0 42 28041.0 43 29296.0 44 30805.0 45 32087.0 46 33003.0 47 34056.5 48 35354.0 49 36768.0 50 38143.0 51 36696.5 52 33813.5 53 32892.0 54 32663.0 55 30919.0 56 26400.0 57 22201.5 58 20338.0 59 18725.0 60 15176.5 61 11154.5 62 8514.5 63 5989.0 64 3807.0 65 2444.5 66 1826.5 67 1451.0 68 1058.5 69 689.0 70 415.0 71 291.0 72 209.0 73 150.5 74 126.5 75 91.0 76 56.5 77 34.0 78 23.0 79 13.0 80 5.0 81 2.5 82 0.5 83 1.0 84 0.5 85 1.0 86 1.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4854971435319465 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.001205006561260726 22-23 0.0013255072173867985 24-25 4.217522964412541E-4 26-27 0.003072766731214852 28-29 0.00506102755729505 30-31 9.037549209455445E-4 32-33 1.2050065612607261E-4 34-35 0.004157272636349505 36-37 0.0023497627944584158 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.008736297569140263 46-47 0.08459146060050297 48-49 9.640052490085809E-4 50-51 0.0 52-53 6.0250328063036305E-5 54-55 0.0 56-57 0.00831454527269901 58-59 0.04018696881804521 60-61 0.029643161407013858 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 6.627536086933993E-4 78-79 0.00831454527269901 80-81 0.006205783790492738 82-83 7.832542648194718E-4 84-85 0.002711264762836634 86-87 0.0 88-89 0.0 90-91 0.0 92-93 1.2050065612607261E-4 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06898662563217657 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 829871.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.040297152691515 #Duplication Level Percentage of deduplicated Percentage of total 1 78.63822109559484 49.57376825425354 2 13.753236740547143 17.340162618708128 3 3.9335967140727104 7.439253172019838 4 1.5121966812584653 3.8131731255939036 5 0.6955552841611004 2.192400589982028 6 0.3804700997120203 1.439096888613596 7 0.244585997834293 1.0793141788002976 8 0.1484730790488143 0.7487829617929849 9 0.10261094059725623 0.5821761767731389 >10 0.4808190128534648 5.719203093803447 >50 0.0557897138178326 2.506466824631544 >100 0.05080221739402865 5.897714788284157 >500 0.003067303669934174 1.2902195205210032 >1k 5.751194381126577E-4 0.3782678062224373 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 1100 0.13255072173867988 No Hit ATACAAAACCGTGCGCGGCTTAACCCGCGGTCTAATGTTATTAAATATGT 1024 0.12339267187309835 No Hit GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 1006 0.12122366006282903 No Hit GTATCAACGCAGAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCG 883 0.1064020793593221 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 874 0.10531757345418745 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 1.8075098418910893E-4 0.0 12-13 0.0 0.0 0.0 2.4100131225214522E-4 0.0 14-15 0.0 0.0 0.0 2.4100131225214522E-4 0.0 16-17 0.0 0.0 0.0 2.4100131225214522E-4 0.0 18-19 0.0 0.0 0.0 2.4100131225214522E-4 0.0 20-21 0.0 0.0 0.0 3.012516403151815E-4 0.0 22-23 0.0 0.0 0.0 4.217522964412541E-4 0.0 24-25 0.0 0.0 0.0 6.627536086933994E-4 0.0 26-27 0.0 0.0 0.0 8.435045928825083E-4 0.0 28-29 0.0 0.0 0.0 9.037549209455445E-4 0.0 30-31 0.0 0.0 0.0 0.002048511154143234 0.0 32-33 0.0 0.0 0.0 0.004338023620538613 0.0 34-35 0.0 0.0 0.0 0.007712041992068647 0.0 36-37 0.0 0.0 0.0 0.013496073486120131 0.0 38-39 0.0 0.0 0.0 0.026028141723231684 0.0 40-41 0.0 0.0 0.0 0.04319948522119703 0.0 42-43 0.0 0.0 0.0 0.05880432018952343 0.0 44-45 0.0 0.0 0.0 0.07669866762424521 0.0 46-47 0.0 0.0 0.0 0.09597877260441683 0.0 48-49 0.0 0.0 0.0 0.11712663775454257 0.0 50-51 0.0 0.0 0.0 0.1436970324303416 0.0 52-53 0.0 0.0 0.0 0.1718941859638426 0.0 54-55 0.0 0.0 0.0 0.2028026042601802 0.0 56-57 0.0 0.0 0.0 0.23672353895966963 0.0 58-59 0.0 0.0 0.0 0.2795615222124884 0.0 60-61 0.0 0.0 0.0 0.32438776629138744 0.0 62-63 0.0 0.0 0.0 0.3759620471133465 0.0 64-65 0.0 0.0 0.0 0.424825063172469 0.0 66-67 0.0 0.0 0.0 0.48350888270586634 0.0 68-69 0.0 0.0 0.0 0.5489407389823238 0.0 70-71 0.0 0.0 0.0 0.6300376805551706 0.0 72-73 0.0 0.0 0.0 0.7194491674007165 0.0 74-75 0.0 0.0 0.0 0.8075351470288756 0.0 76-77 0.0 0.0 0.0 0.8977901384673039 0.0 78-79 0.0 0.0 0.0 1.0014207027357265 0.0 80-81 0.0 0.0 0.0 1.1330074192253976 0.0 82-83 0.0 0.0 0.0 1.2733906836122721 0.0 84-85 0.0 0.0 0.0 1.4160032101374793 0.0 86-87 0.0 0.0 0.0 1.5721118101488063 0.0 88-89 0.0 0.0 0.0 1.7501515295750785 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTGCG 245 0.0 52.33585 9 AACCGTG 290 0.0 47.489937 7 AAACCGT 290 0.0 47.489937 6 ACCGTGC 285 0.0 46.656784 8 GGTATCA 940 0.0 45.135204 1 GTATCAA 1650 0.0 44.203915 1 ATCAACG 2095 0.0 34.68239 3 TCAACGC 2160 0.0 33.418846 4 TATCAAC 2390 0.0 30.798916 2 CAACGCA 2425 0.0 29.766888 5 CGTATAC 65 0.0057414914 29.335932 1 GTATACG 65 0.0057414914 29.335932 1 TGCGCGG 235 0.0 29.3023 12-13 CGCAGAG 2570 0.0 28.457006 8 AACGCAG 2545 0.0 28.363342 6 ACGCAGA 2620 0.0 27.913933 7 CGGTCTA 245 0.0 27.141195 28-29 CGGCTTA 265 0.0 26.881908 16-17 AAAACCG 780 0.0 26.789196 5 GCGCGGC 285 0.0 26.661018 12-13 >>END_MODULE