##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224555_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 874015 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.118429317574645 34.0 33.0 34.0 31.0 34.0 2 33.2528114506044 34.0 33.0 34.0 31.0 34.0 3 33.36354524807927 34.0 34.0 34.0 31.0 34.0 4 36.59770484488252 37.0 37.0 37.0 35.0 37.0 5 36.626213508921474 37.0 37.0 37.0 35.0 37.0 6 36.65865002316894 37.0 37.0 37.0 35.0 37.0 7 36.63228091051069 37.0 37.0 37.0 35.0 37.0 8 36.61738070856907 37.0 37.0 37.0 35.0 37.0 9 38.449605555968716 39.0 39.0 39.0 37.0 39.0 10-11 38.46808464385623 39.0 39.0 39.0 37.0 39.0 12-13 38.4559109397436 39.0 39.0 39.0 37.0 39.0 14-15 40.03002751669022 41.0 40.0 41.0 38.0 41.0 16-17 40.03657202679588 41.0 40.0 41.0 38.0 41.0 18-19 40.02969457045931 41.0 40.0 41.0 38.0 41.0 20-21 40.03003266534327 41.0 40.0 41.0 38.0 41.0 22-23 39.94603868354662 41.0 40.0 41.0 38.0 41.0 24-25 39.89341887725039 41.0 40.0 41.0 38.0 41.0 26-27 39.8228342762996 41.0 40.0 41.0 38.0 41.0 28-29 39.784552324616854 41.0 40.0 41.0 37.5 41.0 30-31 39.712487199876435 41.0 40.0 41.0 37.0 41.0 32-33 39.650167331224296 41.0 40.0 41.0 37.0 41.0 34-35 39.55790289640338 41.0 40.0 41.0 36.5 41.0 36-37 39.43462526386847 41.0 39.5 41.0 36.0 41.0 38-39 39.32145043277289 41.0 39.0 41.0 36.0 41.0 40-41 39.180769780839 41.0 39.0 41.0 35.0 41.0 42-43 39.07038952420725 41.0 39.0 41.0 35.0 41.0 44-45 38.80543754969881 40.5 38.5 41.0 35.0 41.0 46-47 38.55121651230242 40.0 38.0 41.0 35.0 41.0 48-49 38.43901363248915 40.0 38.0 41.0 35.0 41.0 50-51 38.266068660148854 40.0 37.5 41.0 35.0 41.0 52-53 38.01437503932999 40.0 37.0 41.0 34.0 41.0 54-55 37.82113236042859 40.0 36.5 41.0 34.0 41.0 56-57 37.5893920584887 39.5 35.5 41.0 34.0 41.0 58-59 37.32032631018919 39.0 35.0 41.0 33.0 41.0 60-61 37.06204756211278 39.0 35.0 41.0 33.0 41.0 62-63 36.83483750278886 38.0 35.0 41.0 33.0 41.0 64-65 36.55430455999039 37.5 35.0 40.0 33.0 41.0 66-67 36.25084466513732 37.0 35.0 40.0 32.0 41.0 68-69 35.96883405891204 36.5 35.0 39.5 32.0 41.0 70-71 35.656235304886074 36.0 35.0 39.0 32.0 41.0 72-73 35.33670360348506 35.5 35.0 39.0 31.0 41.0 74-75 35.01403808859116 35.0 35.0 38.5 31.0 40.0 76-77 33.180334433619564 34.5 32.0 35.5 28.5 38.5 78-79 34.519133538898075 35.0 34.5 37.0 31.0 39.0 80-81 34.45896523515043 35.0 35.0 36.5 32.0 39.0 82-83 34.2519499093265 35.0 35.0 36.0 31.0 37.0 84-85 34.046262935990804 35.0 35.0 36.0 31.0 37.0 86-87 33.844796141942645 35.0 34.0 35.0 31.0 37.0 88-89 33.68184356103728 35.0 34.0 35.0 31.0 36.0 90-91 33.54597804385509 35.0 34.0 35.0 31.0 36.0 92-93 33.45153000806622 35.0 34.0 35.0 31.0 36.0 94-95 33.344508389444115 35.0 34.0 35.0 30.0 36.0 96-97 33.29063288387499 35.0 34.0 35.0 30.0 35.0 98-99 33.254916105558834 35.0 34.0 35.0 30.0 35.0 100-101 32.395146536386676 34.5 32.5 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 5.0 14 18.0 15 45.0 16 160.0 17 361.0 18 667.0 19 1093.0 20 1610.0 21 2272.0 22 3282.0 23 3153.0 24 2644.0 25 2740.0 26 3486.0 27 4735.0 28 5887.0 29 6863.0 30 7338.0 31 8680.0 32 10376.0 33 14508.0 34 23694.0 35 45977.0 36 117147.0 37 241579.0 38 287105.0 39 78562.0 40 28.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.28159018228885 19.35873590991542 13.763854435603456 23.595819472192268 2 15.729363912518664 19.980435118390417 39.40939228731772 24.880808681773196 3 18.607689799374153 26.881232015468843 29.09698346138224 25.414094723774767 4 12.462943999816936 17.399129305561118 39.65538348884172 30.48254320578022 5 13.472995314725718 38.27520122652357 34.83624422921803 13.415559229532672 6 29.321007076537587 37.545465466839815 19.51556895476622 13.617958501856375 7 26.580665091560213 31.455981876741244 23.314245178858485 18.649107852840054 8 25.940172651499115 34.20765089843996 20.613261786124955 19.238914663935976 9 26.322660366240854 15.522616888726166 20.815317814911644 37.33940493012134 10-11 25.80647929383363 25.28417704501639 27.986190168360952 20.923153492789027 12-13 26.399947369324323 23.22940681796079 28.108613696561275 22.262032116153613 14-15 23.624937787108916 24.971196146519226 25.475249280618755 25.928616785753107 16-17 23.23432664199127 27.17087235344931 26.524315944234367 23.07048506032505 18-19 23.01917015154202 26.745765232862134 27.611253811433446 22.6238108041624 20-21 24.485086192249362 25.249726689362937 27.27431349116224 22.990873627225458 22-23 24.437817218227835 25.85920659402016 26.577624358698586 23.125351829053415 24-25 23.88434026077445 25.6828281533892 26.89757120039542 23.53526038544093 26-27 23.45653162623463 26.67988180744224 26.98234262683818 22.881243939484953 28-29 23.370666184583367 26.59171873185394 27.257977687247315 22.77963739631538 30-31 23.497062373785045 25.652255993958846 27.34269254752547 23.50798908473064 32-33 23.548263270533006 25.829006073704814 27.583441216869076 23.039289438893107 34-35 24.007485301428694 25.800490743776027 26.863845204607202 23.328178750188076 36-37 23.338003424479247 25.839086088525022 27.353213924690063 23.46969656230567 38-39 23.40091417195357 26.057619148412787 26.853772532508025 23.687694147125622 40-41 23.78935144133682 25.8837662969171 27.140495300423908 23.186386961322174 42-43 23.76332213978021 25.978101062338748 27.176535871809982 23.082040926071063 44-45 23.913263621857677 25.76156936066792 26.805410696784833 23.51975632068957 46-47 23.75270528690355 25.630432044338075 26.541297850656715 24.07556481810166 48-49 23.47353005114358 25.658916946030363 26.92926854383817 23.938284458987884 50-51 23.74478698878166 25.86105501621826 26.50211952884104 23.892038466159047 52-53 24.124414340714974 26.125066503435296 26.021635784282875 23.72888337156685 54-55 23.88746188566558 25.575705222450416 26.497314119322894 24.03951877256111 56-57 24.062246123920133 26.017849991418274 26.007323073402368 23.912580811259225 58-59 24.358884110100984 25.93662812159297 26.285737178111436 23.418750590194616 60-61 23.912496108700033 26.22690399018477 26.195888040432898 23.664711860682306 62-63 23.88528800993118 25.812200019450465 26.58009301899853 23.722418951619822 64-65 24.117149019181593 25.660829619628956 26.242970658398313 23.97905070279114 66-67 23.643701767132143 25.856364021212453 26.1889098013192 24.311024410336206 68-69 24.00044621659811 25.879189716423628 26.493080782366434 23.62728328461182 70-71 24.40718980795524 25.611059306762467 26.238622906929514 23.743127978352774 72-73 23.97212862479477 25.604137228766096 26.60234664164803 23.821387504791108 74-75 23.99535477079913 25.44201186478493 26.426148292649437 24.136485071766504 76-77 23.910513916841055 25.189899921397053 26.213797735273957 24.685788426487935 78-79 23.854990874711795 25.151983248373753 26.324139390922767 24.66888648599168 80-81 23.57127001526389 25.795690410752 26.337135194139766 24.29590437984434 82-83 23.61301564799925 25.927006514231255 26.537354571088756 23.92262326668074 84-85 23.742028715217966 25.524072464821085 26.67550728177973 24.05839153818122 86-87 23.567044043866524 26.150352110661718 26.355325709512993 23.927278135958765 88-89 23.97024078534121 25.516552919572316 25.921179842451213 24.592026452635253 90-91 23.926076783579227 25.65247736022837 26.00229973169797 24.419146124494432 92-93 23.84960432578636 25.73847459052453 26.46168913673629 23.950231946952822 94-95 23.839808241277325 25.640120592896004 26.2068156724999 24.313255493326775 96-97 23.728826164310682 26.144516970532543 26.29285538577713 23.833801479379645 98-99 22.71585727933731 26.421457297643634 26.615447103310586 24.247238319708472 100-101 23.55093640784619 25.79619712222391 26.29813348141067 24.35473298851924 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 1.5 3 4.5 4 3.5 5 2.0 6 5.0 7 13.0 8 31.0 9 47.0 10 63.0 11 73.5 12 66.5 13 74.0 14 94.0 15 114.0 16 137.5 17 153.5 18 175.5 19 202.5 20 242.5 21 305.0 22 387.0 23 516.5 24 712.5 25 997.5 26 1459.5 27 2080.0 28 2893.0 29 3958.0 30 5284.0 31 7100.0 32 9250.5 33 11417.5 34 13568.0 35 15642.0 36 18193.0 37 20926.5 38 22535.5 39 23594.5 40 24396.0 41 25041.0 42 25819.0 43 27002.0 44 28905.0 45 31217.5 46 33037.5 47 34416.0 48 35933.5 49 38351.0 50 41475.0 51 40335.0 52 37290.0 53 37756.0 54 38595.5 55 36463.5 56 30540.0 57 26010.5 58 24656.0 59 23348.0 60 19201.5 61 14053.5 62 11331.0 63 8218.5 64 5067.0 65 3307.5 66 2618.0 67 2210.0 68 1677.0 69 1079.0 70 659.5 71 473.5 72 358.5 73 275.0 74 203.0 75 140.0 76 89.0 77 53.5 78 30.0 79 18.5 80 10.0 81 7.5 82 5.5 83 5.0 84 4.0 85 1.5 86 1.5 87 1.5 88 1.0 89 0.5 90 0.0 91 0.0 92 0.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4664679667969085 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0010869378671990756 22-23 0.0012585596357041927 24-25 3.4324353701023437E-4 26-27 0.002002253965893034 28-29 0.0034896426262707165 30-31 0.0011441451233674478 32-33 1.7162176850511718E-4 34-35 0.004061715187954441 36-37 0.0015445959165460547 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.009095953730771211 46-47 0.08295052144413997 48-49 5.720725616837239E-4 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0074369433018884115 58-59 0.04147526072206999 60-61 0.03100633284325784 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 2.2882902467348957E-4 78-79 0.008009015863572135 80-81 0.006521627203194453 82-83 6.292798178520963E-4 84-85 0.0021166684782297786 86-87 0.0 88-89 0.0 90-91 0.0 92-93 5.720725616837239E-5 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.068362671121205 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 874015.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.396636646730016 #Duplication Level Percentage of deduplicated Percentage of total 1 76.9502576162224 43.39735718654364 2 14.202539624802457 16.01950933361539 3 4.41110620305092 7.46314661230799 4 1.7821942582834487 4.020390480732006 5 0.8422652012625504 2.3750462257894496 6 0.4561951688170562 1.5436723905461507 7 0.25563665636127003 1.009193333567407 8 0.17879391958367324 0.8066700573924069 9 0.12285167384897067 0.6235579090352685 >10 0.6286706917381465 6.6410733664251085 >50 0.0811853804739138 3.26637326805531 >100 0.0805719534807359 9.183443983072454 >500 0.006103935848302073 2.449392679209649 >1k 0.0016277162262138861 1.2011731737077955 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 2305 0.26372545093619676 No Hit GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 1373 0.1570911254383506 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 1314 0.15034066921048267 No Hit ATACAAAACCGTGCGCGGCTTAACCCGCGGTCTAATGTTATTAAATATGT 1308 0.14965418213646217 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 1147 0.13123344565024628 No Hit TCATTTAGGTGAGAAAACCCTCTCTACTTTGGCGCGACTGCGTGAACGCG 1017 0.11635955904646947 No Hit CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG 1003 0.11475775587375503 No Hit GTATCAACGCAGAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCG 1001 0.11452892684908153 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 978 0.11189739306533641 No Hit ATATACACCAGATTCAGACAGCCAATCACCCGTTGTTCACTGCGCAGCGG 940 0.1075496415965401 No Hit GAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCAT 897 0.10262981756606007 No Hit GTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCC 895 0.10240098854138659 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 1.144145123367448E-4 0.0 5 0.0 0.0 0.0 1.144145123367448E-4 0.0 6 0.0 0.0 0.0 1.144145123367448E-4 0.0 7 0.0 0.0 0.0 1.144145123367448E-4 0.0 8 0.0 0.0 0.0 1.144145123367448E-4 1.144145123367448E-4 9 0.0 0.0 0.0 1.144145123367448E-4 1.144145123367448E-4 10-11 0.0 0.0 0.0 1.144145123367448E-4 1.144145123367448E-4 12-13 0.0 0.0 0.0 1.144145123367448E-4 1.144145123367448E-4 14-15 0.0 0.0 0.0 1.144145123367448E-4 1.144145123367448E-4 16-17 0.0 0.0 0.0 1.144145123367448E-4 1.144145123367448E-4 18-19 0.0 0.0 0.0 1.7162176850511718E-4 1.144145123367448E-4 20-21 0.0 0.0 0.0 2.288290246734896E-4 1.144145123367448E-4 22-23 0.0 0.0 0.0 3.4324353701023437E-4 1.144145123367448E-4 24-25 0.0 0.0 0.0 6.292798178520963E-4 1.144145123367448E-4 26-27 0.0 0.0 0.0 7.436943301888412E-4 1.144145123367448E-4 28-29 0.0 0.0 0.0 0.0011441451233674478 1.144145123367448E-4 30-31 0.0 0.0 0.0 0.0025171192714083853 1.144145123367448E-4 32-33 0.0 0.0 0.0 0.00669324897169957 1.144145123367448E-4 34-35 0.0 0.0 0.0 0.011269829465169363 1.144145123367448E-4 36-37 0.0 0.0 0.0 0.020823441245287552 1.144145123367448E-4 38-39 0.0 0.0 0.0 0.037527960046452286 1.144145123367448E-4 40-41 0.0 0.0 0.0 0.05634914732584681 1.144145123367448E-4 42-43 0.0 0.0 0.0 0.07431222576271575 1.144145123367448E-4 44-45 0.0 0.0 0.0 0.09364827834762562 1.144145123367448E-4 46-47 0.0 0.0 0.0 0.11973478716040342 1.7162176850511718E-4 48-49 0.0 0.0 0.0 0.1474230991458957 2.288290246734896E-4 50-51 0.0 0.0 0.0 0.17911591906317398 2.288290246734896E-4 52-53 0.0 0.0 0.0 0.21103756800512577 2.8603628084186196E-4 54-55 0.0 0.0 0.0 0.2435312895087613 3.4324353701023437E-4 56-57 0.0 0.0 0.0 0.2793430318701624 3.4324353701023437E-4 58-59 0.0 0.0 0.0 0.32196243771559985 3.4324353701023437E-4 60-61 0.0 0.0 0.0 0.3719615796067573 3.4324353701023437E-4 62-63 0.0 0.0 0.0 0.4217890997294097 3.4324353701023437E-4 64-65 0.0 0.0 0.0 0.46938553686149553 3.4324353701023437E-4 66-67 0.0 0.0 0.0 0.5300824356561387 3.4324353701023437E-4 68-69 0.0 0.0 0.0 0.5990171793390273 3.4324353701023437E-4 70-71 0.0 0.0 0.0 0.6721280527222073 3.4324353701023437E-4 72-73 0.0 0.0 0.0 0.7619434449065519 3.4324353701023437E-4 74-75 0.0 0.0 0.0 0.854275956362305 3.4324353701023437E-4 76-77 0.0 0.0 0.0 0.9447778356206702 3.4324353701023437E-4 78-79 0.0 0.0 0.0 1.0494099071526233 3.4324353701023437E-4 80-81 0.0 0.0 0.0 1.1676000983964805 3.4324353701023437E-4 82-83 0.0 0.0 0.0 1.3030668810031862 3.4324353701023437E-4 84-85 0.0 0.0 0.0 1.4409935756251322 3.4324353701023437E-4 86-87 0.0 0.0 0.0 1.593050462520666 3.4324353701023437E-4 88-89 0.0 0.0 0.0 1.7470523961259246 3.4324353701023437E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 935 0.0 51.570118 1 GTATCAA 1890 0.0 47.740654 1 CCGTGCG 270 0.0 47.489388 9 AAACCGT 295 0.0 45.074677 6 ACCGTGC 350 0.0 39.34835 8 ATCAACG 2340 0.0 36.327354 3 AACCGTG 360 0.0 35.617043 7 GTCTAAT 705 0.0 35.212967 1 TCAACGC 2415 0.0 35.199173 4 TCTAATG 835 0.0 31.84917 2 CAACGCA 2735 0.0 31.254442 5 TATCAAC 2795 0.0 30.583508 2 ACGCAGA 2810 0.0 30.420248 7 CGCAGAG 2810 0.0 30.420248 8 AACGCAG 2845 0.0 30.379856 6 CTAATGT 935 0.0 29.458658 3 GTTATTA 880 0.0 28.601562 8 TAATGTT 1020 0.0 26.072607 4 ATGCGGG 150 1.0616914E-6 25.327671 8 GCAGAGT 3445 0.0 24.950884 9 >>END_MODULE