##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224553_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1062104 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.20859445026099 34.0 31.0 34.0 31.0 34.0 2 32.370763126774776 34.0 31.0 34.0 31.0 34.0 3 32.510793669923096 34.0 31.0 34.0 31.0 34.0 4 35.79783335718536 37.0 37.0 37.0 35.0 37.0 5 35.80617811438428 37.0 37.0 37.0 35.0 37.0 6 35.908580515655714 37.0 37.0 37.0 35.0 37.0 7 35.871560600468506 37.0 37.0 37.0 35.0 37.0 8 35.906937550371715 37.0 37.0 37.0 35.0 37.0 9 37.63875948118075 39.0 39.0 39.0 35.0 39.0 10-11 37.712371387359426 39.0 39.0 39.0 35.0 39.0 12-13 37.70734786800539 39.0 39.0 39.0 35.0 39.0 14-15 39.20726030595874 41.0 40.0 41.0 36.0 41.0 16-17 39.04808898186995 41.0 40.0 41.0 36.0 41.0 18-19 39.11750591279197 41.0 40.0 41.0 36.0 41.0 20-21 39.17524507957789 41.0 40.0 41.0 36.0 41.0 22-23 39.13507057689266 41.0 40.0 41.0 36.0 41.0 24-25 39.07815195122134 41.0 39.5 41.0 36.0 41.0 26-27 38.90647478966278 41.0 39.0 41.0 35.0 41.0 28-29 38.828277174363336 41.0 39.0 41.0 35.0 41.0 30-31 38.75229120688746 41.0 39.0 41.0 35.0 41.0 32-33 38.56243550537424 41.0 39.0 41.0 35.0 41.0 34-35 38.561293903421884 40.0 39.0 41.0 35.0 41.0 36-37 38.55797125328593 40.0 39.0 41.0 35.0 41.0 38-39 38.43979732681545 40.0 38.0 41.0 34.5 41.0 40-41 38.35220656357569 40.0 38.0 41.0 34.0 41.0 42-43 38.20445737893841 40.0 38.0 41.0 34.0 41.0 44-45 38.02621730075398 40.0 38.0 41.0 33.0 41.0 46-47 37.851307875688256 40.0 37.5 41.0 33.0 41.0 48-49 37.64241213666458 40.0 37.0 41.0 33.0 41.0 50-51 36.36101973064785 38.5 35.5 40.0 30.5 40.5 52-53 36.6896984664402 39.0 35.5 40.0 31.5 40.5 54-55 37.14969626326612 39.0 35.5 41.0 32.0 41.0 56-57 36.98987010688219 39.0 35.0 41.0 32.0 41.0 58-59 36.8352990855886 39.0 35.0 41.0 32.0 41.0 60-61 36.57057783418573 39.0 35.0 41.0 31.0 41.0 62-63 36.278735415740826 38.0 35.0 41.0 31.0 41.0 64-65 36.01797564080354 37.0 35.0 40.5 31.0 41.0 66-67 35.76930884357841 37.0 35.0 40.0 30.5 41.0 68-69 35.448419363828776 36.0 35.0 39.5 30.0 41.0 70-71 35.14580257677214 36.0 35.0 39.0 30.0 41.0 72-73 34.81801970428508 35.0 34.5 39.0 29.0 41.0 74-75 34.52939166032705 35.0 34.0 37.5 29.0 40.0 76-77 34.19590501495145 35.0 34.0 37.0 29.0 39.0 78-79 33.95791749207234 35.0 34.0 37.0 29.0 39.0 80-81 33.65556856955628 35.0 34.0 36.0 29.0 39.0 82-83 33.40175773747204 35.0 34.0 36.0 29.0 37.0 84-85 33.182587110113516 35.0 34.0 35.5 28.0 37.0 86-87 32.975572542801835 35.0 34.0 35.0 27.0 36.5 88-89 32.82660031409354 35.0 34.0 35.0 27.0 36.0 90-91 32.6667741577096 35.0 33.0 35.0 27.0 36.0 92-93 32.53625209960606 35.0 33.0 35.0 26.5 36.0 94-95 32.41190269502798 35.0 33.0 35.0 26.0 35.5 96-97 32.28351837484841 35.0 33.0 35.0 25.0 35.0 98-99 32.2357448046519 35.0 33.0 35.0 25.0 35.0 100-101 31.0304937181293 34.0 31.0 35.0 22.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 4.0 7 96.0 8 319.0 9 337.0 10 497.0 11 1068.0 12 1720.0 13 2066.0 14 2175.0 15 2197.0 16 2428.0 17 2604.0 18 2855.0 19 3311.0 20 3721.0 21 4833.0 22 5658.0 23 5599.0 24 5520.0 25 5828.0 26 6202.0 27 6606.0 28 7303.0 29 8688.0 30 10162.0 31 13130.0 32 17242.0 33 24293.0 34 39437.0 35 70210.0 36 151583.0 37 269981.0 38 301369.0 39 83036.0 40 26.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.33690678137909 18.152544019039947 12.698266018046086 24.81228318153487 2 16.490381356251365 19.081747173534794 38.38851939169799 26.039352078515854 3 20.301515013139028 24.589705518203036 27.73149120188908 27.377288266768858 4 12.740089482762517 16.046545347724894 38.10568456572991 33.10768060378268 5 14.040338799213636 38.22299887769936 34.073876004609716 13.662786318477288 6 31.656881058728715 36.16030068618516 18.45968003133403 13.723138223752098 7 28.14394823859057 30.439015388323554 21.65098709730874 19.766049275777135 8 26.238202661886216 34.59877752084542 19.929686735009 19.233333082259367 9 26.491285222539414 15.201901132092527 19.615310741697613 38.69150290367045 10-11 26.36676822608709 24.615762674841633 27.564438134118692 21.453030964952585 12-13 26.631808184509236 22.286000241031008 27.583221605417172 23.49896996904258 14-15 23.682346647377504 24.333355937822585 24.66225125643286 27.32204615836705 16-17 23.804072595366804 26.966564204030195 25.74761214947768 23.481751051125322 18-19 23.688408799819182 26.57490770737588 26.466605138250582 23.270078354554357 20-21 24.81656707758153 24.97339162999578 26.340826375911746 23.86921491651094 22-23 24.51648187036655 25.96870851739949 25.56623602486813 23.948573587365832 24-25 23.984307720848065 25.616204933782893 26.143879479077352 24.255607866291687 26-27 23.933108245520213 26.619474175786927 26.16095034007969 23.286467238613167 28-29 23.645377477158547 26.729774108750178 26.1681059481934 23.45674246589788 30-31 23.862917379089055 25.818940518066025 26.305757251643907 24.012384851201013 32-33 23.676542033548504 25.946988242206036 26.55530908460942 23.821160639636044 34-35 24.36112659400586 25.56421028449191 26.090571168171856 23.98409195333037 36-37 23.5802561563551 25.76565097813758 26.709816125108944 23.944276740398372 38-39 23.711756636005752 26.088393451513912 26.021258946167166 24.17859096631317 40-41 24.3302295669761 25.606072447160805 26.439984068441674 23.623713917421423 42-43 24.173430966479643 25.770734724891277 26.436933124056676 23.618901184572405 44-45 24.220524371089912 25.49317511553716 26.22947732383173 24.056823189541205 46-47 24.043455254852635 25.44538952870905 26.04208250792766 24.46907270851065 48-49 23.507114180908836 25.902218615126205 26.410031409353508 24.180635794611447 50-51 23.79625724034558 26.080167290585482 26.009741042308477 24.11383442676047 52-53 24.041807581931714 26.10370547517004 25.417944005483456 24.436542937414792 54-55 24.11684731438729 25.25774312120094 25.99213448023922 24.63327508417255 56-57 24.102641597546757 25.852753521667143 25.752998648436805 24.291606232349295 58-59 24.29956089839266 26.00196244424125 26.12809939535247 23.570377262013615 60-61 24.169711466023806 26.19754783787856 25.713095148410424 23.919645547687207 62-63 23.729225390911584 25.906633277234313 26.216951572452025 24.147189759402078 64-65 24.53552380970323 25.14487211127082 25.752242315090246 24.5673617639357 66-67 23.587449984791796 25.812932527377118 25.568424194883455 25.031193292947634 68-69 23.781898947748996 25.87623245934485 26.508138562701955 23.833730030204197 70-71 24.246683940555727 25.470857844429545 26.055687578617537 24.226770636397188 72-73 23.89954279430263 25.718244164413278 26.517365531059106 23.864847510224987 74-75 24.11002124085777 25.526455036418277 26.31084149951417 24.05268222320978 76-77 24.01130209471012 25.184492290773786 25.85467148226539 24.949534132250704 78-79 24.001832506461092 24.852450741972074 26.321045526862086 24.824671224704748 80-81 23.851534764715883 25.801955602113775 25.819430634249464 24.52707899892088 82-83 23.652339536868443 26.05498874810545 26.223696518176826 24.068975196849284 84-85 23.8116518441988 25.29631593471019 26.660193315244367 24.231838905846644 86-87 23.688340659319955 26.358384879012885 25.935264404371853 24.018010057295307 88-89 24.14047559510607 25.443777786882123 25.609068677658748 24.806677940353065 90-91 23.695278428477813 25.431831534388344 26.005315863606576 24.867574173527263 92-93 23.77876630716482 25.61367101932403 26.47698389421051 24.13057877930064 94-95 24.022223812357357 25.355332434488524 26.305945557120587 24.316498196033535 96-97 24.219097188222623 25.740464210661102 26.248465310365088 23.79197329075119 98-99 23.194705196695597 25.93630719575783 26.340083495120037 24.528904112426535 100-101 23.914947849111414 25.50019733786975 25.859597167000587 24.72525764601825 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1.0 1 1.0 2 2.0 3 4.5 4 5.0 5 4.0 6 7.5 7 13.0 8 21.0 9 28.0 10 32.0 11 35.5 12 37.0 13 41.0 14 46.0 15 50.5 16 57.0 17 75.5 18 99.0 19 114.0 20 137.0 21 175.5 22 228.5 23 278.0 24 361.0 25 545.5 26 744.0 27 1033.0 28 1454.0 29 2127.5 30 3341.0 31 5321.5 32 8285.0 33 11851.0 34 15719.0 35 19397.0 36 23208.5 37 26426.5 38 27744.0 39 28416.5 40 28702.0 41 29020.0 42 29773.0 43 30949.0 44 32320.0 45 35028.5 46 39048.5 47 40313.0 48 41510.5 49 45234.0 50 48746.5 51 48957.5 52 47850.5 53 48777.0 54 50758.5 55 49998.0 56 42228.0 57 35671.0 58 33737.0 59 31376.5 60 25794.0 61 19206.0 62 15425.5 63 11241.5 64 6819.5 65 4191.0 66 3141.5 67 2733.5 68 2110.5 69 1354.0 70 779.0 71 455.0 72 314.0 73 292.0 74 232.5 75 151.5 76 104.0 77 57.5 78 38.5 79 34.5 80 29.0 81 18.0 82 15.0 83 11.0 84 8.5 85 9.5 86 6.5 87 7.0 88 8.0 89 8.5 90 6.5 91 5.5 92 6.5 93 3.5 94 2.0 95 3.0 96 4.5 97 4.0 98 3.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.15036192312617222 2 0.0 3 9.415273833824183E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.034648207708472996 16-17 0.06981425547780631 18-19 0.024856322921295845 20-21 0.038414317242002664 22-23 0.06261157099493081 24-25 0.01699456927005265 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.02010160963521463 38-39 0.005366706085279785 40-41 0.005743317038632751 42-43 0.0031070403651619807 44-45 0.010168495740530118 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 4.707636916912091E-5 58-59 0.015346896349133419 60-61 0.017324103854236498 62-63 0.027398446856428373 64-65 0.045005008925679595 66-67 0.016665034685868805 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.01605304188667023 80-81 0.05550303925039356 82-83 0.04754713286081212 84-85 0.029658112576546176 86-87 0.055173504666209704 88-89 0.031964854665833105 90-91 0.0 92-93 0.003059963995992859 94-95 0.0 96-97 0.0 98-99 5.64916430029451E-4 100-101 0.044534245233988384 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1062104.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.024339365135106 #Duplication Level Percentage of deduplicated Percentage of total 1 73.07996341954171 37.288568543103565 2 15.064886077462022 15.373517194270429 3 5.391974486803656 8.2536580818846 4 2.435643355616625 4.971083725976764 5 1.2803254664146366 3.266388054808266 6 0.7049813290931898 2.158272394904095 7 0.47237429767415906 1.6871810530325555 8 0.296167514285475 1.2089401406264462 9 0.2105456513769652 0.966865749094053 >10 0.8907957612430443 7.995129525795454 >50 0.07946387737580589 2.9013145103179983 >100 0.08112904062549971 8.768435198755396 >500 0.008952169514131797 3.017878685696117 >1k 0.0027975529731661865 2.1427671417342875 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 3287 0.3094800509178009 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 2289 0.21551561805623556 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 1863 0.17540655152414453 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 1589 0.14960870121946626 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 1434 0.1350150267770388 No Hit GGTCAGCACCGTCAATGCAGCGCCTTTATTGCAGCCCACCGGCAGCACTT 1354 0.12748280770997944 No Hit TAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCATCGCA 1343 0.12644712758825877 No Hit CGCCTAATGCTTCGTATAGCTGGATCTGCAAGCGTGTAAGATCGTCGTGA 1263 0.11891490852119944 No Hit GTATAGCTGGATCTGCAAGCGTGTAAGATCGTCGTGATCGCCACAGAAGC 1258 0.11844414482950823 No Hit GTGTAAGATCGTCGTGATCGCCACAGAAGCAGATCTTGGTGACGCTGCCG 1241 0.11684354827775811 No Hit GTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCC 1175 0.11062946754743415 No Hit ATATACACCAGATTCAGACAGCCAATCACCCGTTGTTCACTGCGCAGCGG 1172 0.11034700933241941 No Hit CCTTTATTGCAGCCCACCGGCAGCACTTCGAGGCAATCCGTGGCGGAAAA 1166 0.10978209290238997 No Hit GACTAACATTTCGCGATCGTTCATCGCATCACCAAAGGCCGTGCAATCGC 1075 0.10121419371360997 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 9.415273833824183E-5 0.0 8 0.0 0.0 0.0 2.824582150147255E-4 0.0 9 0.0 0.0 0.0 4.7076369169120916E-4 0.0 10-11 0.0 0.0 0.0 5.64916430029451E-4 0.0 12-13 0.0 0.0 0.0 8.473746450441765E-4 0.0 14-15 0.0 0.0 0.0 0.0010827564908897811 0.0 16-17 0.0 0.0 0.0 0.0012710619675662647 0.0 18-19 0.0 0.0 0.0 0.0014122910750736274 0.0 20-21 0.0 0.0 0.0 0.0015064438134118692 0.0 22-23 0.0 0.0 0.0 0.0016476729209192321 0.0 24-25 0.0 0.0 0.0 0.001741825659257474 0.0 26-27 0.0 0.0 0.0 0.0020242838742721993 0.0 28-29 0.0 0.0 0.0 0.0024950475659634083 0.0 30-31 0.0 0.0 0.0 0.00569624066946363 0.0 32-33 0.0 0.0 0.0 0.012710619675662647 0.0 34-35 0.0 0.0 0.0 0.021372671602780897 0.0 36-37 0.0 0.0 0.0 0.03554265872268629 0.0 38-39 0.0 0.0 0.0 0.06035190527481302 0.0 40-41 0.0 0.0 0.0 0.09283460000150645 0.0 42-43 0.0 0.0 0.0 0.12164533793300844 0.0 44-45 0.0 0.0 0.0 0.15436341450554747 0.0 46-47 0.0 0.0 0.0 0.19188328073333685 0.0 48-49 0.0 0.0 0.0 0.23128620172789105 0.0 50-51 0.0 0.0 0.0 0.2756792178543721 0.0 52-53 0.0 0.0 0.0 0.3232734270843533 0.0 54-55 0.0 0.0 0.0 0.371809163697717 0.0 56-57 0.0 0.0 0.0 0.43220814534169916 0.0 58-59 0.0 0.0 0.0 0.4991978186693582 0.0 60-61 0.0 0.0 0.0 0.572307419989003 0.0 62-63 0.0 0.0 0.0 0.6515369493006334 0.0 64-65 0.0 0.0 0.0 0.7250231615736312 0.0 66-67 0.0 0.0 0.0 0.8154568667475124 0.0 68-69 0.0 0.0 0.0 0.9185070388587182 0.0 70-71 0.0 0.0 0.0 1.0350681289214614 0.0 72-73 0.0 0.0 0.0 1.159867583588801 0.0 74-75 0.0 0.0 0.0 1.2830193653352213 0.0 76-77 0.0 0.0 0.0 1.4136092134103628 0.0 78-79 0.0 0.0 0.0 1.5674077114858809 0.0 80-81 0.0 0.0 0.0 1.7377770915089295 0.0 82-83 0.0 0.0 0.0 1.9279185465830089 0.0 84-85 0.0 0.0 0.0 2.1224381039898166 0.0 86-87 0.0 0.0 0.0 2.332398710484096 0.0 88-89 0.0 0.0 0.0 2.5661799597779504 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 835 0.0 42.144993 1 CCGTGCG 215 0.0 41.98817 9 GTATCAA 1355 0.0 41.764603 1 AAACCGT 230 0.0 39.223946 6 AACCGTG 300 0.0 34.81985 7 ATCAACG 1680 0.0 33.067554 3 TCAACGC 1740 0.0 31.927296 4 ACCGTGC 320 0.0 31.161276 8 GTACATG 3370 0.0 26.95282 1 CGCAGAG 2155 0.0 26.000439 8 TCGCACC 1275 0.0 25.735914 1 TATACCG 130 1.0050275E-5 25.567024 5 CGCACCA 1320 0.0 25.179646 2 ACGCAGA 2260 0.0 25.00138 7 AGTACCG 95 0.0012292641 24.990326 5 TACATGG 3520 0.0 24.954828 2 TATCAAC 2310 0.0 24.665775 2 ATACCGT 155 1.4152301E-6 24.506641 6 ACATGGG 3565 0.0 24.373453 3 GTCTAAT 610 0.0 24.167545 1 >>END_MODULE