##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224552_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 734830 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.151986173672825 34.0 33.0 34.0 31.0 34.0 2 33.28523740184804 34.0 34.0 34.0 31.0 34.0 3 33.39929099247445 34.0 34.0 34.0 31.0 34.0 4 36.61260155410095 37.0 37.0 37.0 35.0 37.0 5 36.6441380999687 37.0 37.0 37.0 35.0 37.0 6 36.68322469142523 37.0 37.0 37.0 36.0 37.0 7 36.66474286569683 37.0 37.0 37.0 35.0 37.0 8 36.64407413959692 37.0 37.0 37.0 35.0 37.0 9 38.48504824245064 39.0 39.0 39.0 37.0 39.0 10-11 38.507823578242586 39.0 39.0 39.0 37.0 39.0 12-13 38.503427323326484 39.0 39.0 39.0 37.0 39.0 14-15 40.11751901800417 41.0 40.0 41.0 38.0 41.0 16-17 40.125854279221045 41.0 40.0 41.0 38.0 41.0 18-19 40.10975327626798 41.0 40.0 41.0 38.0 41.0 20-21 40.11020984445382 41.0 40.0 41.0 38.0 41.0 22-23 40.03183117183566 41.0 40.0 41.0 38.0 41.0 24-25 40.00948926962699 41.0 40.0 41.0 38.0 41.0 26-27 39.95511070587755 41.0 40.0 41.0 38.0 41.0 28-29 39.91651062150429 41.0 40.0 41.0 38.0 41.0 30-31 39.868461412843786 41.0 40.0 41.0 38.0 41.0 32-33 39.83014710885511 41.0 40.0 41.0 38.0 41.0 34-35 39.75514540778139 41.0 40.0 41.0 37.5 41.0 36-37 39.66421757413279 41.0 40.0 41.0 37.0 41.0 38-39 39.57207789556768 41.0 40.0 41.0 37.0 41.0 40-41 39.44900861423731 41.0 39.5 41.0 36.5 41.0 42-43 39.37101982771526 41.0 39.0 41.0 36.0 41.0 44-45 39.14867452335915 41.0 39.0 41.0 35.0 41.0 46-47 38.940075935930764 41.0 39.0 41.0 35.0 41.0 48-49 38.865117782344214 40.0 39.0 41.0 35.0 41.0 50-51 38.741587169821585 40.0 38.0 41.0 35.0 41.0 52-53 38.52508743518909 40.0 37.5 41.0 35.0 41.0 54-55 38.35533184546085 40.0 37.0 41.0 35.0 41.0 56-57 38.15127716614727 40.0 36.5 41.0 34.5 41.0 58-59 37.893137868622674 40.0 36.0 41.0 34.0 41.0 60-61 37.64448103643019 39.0 35.0 41.0 34.0 41.0 62-63 37.40618986704408 39.0 35.0 41.0 34.0 41.0 64-65 37.11984336513207 38.5 35.0 41.0 33.5 41.0 66-67 36.81296354258808 37.5 35.0 40.0 33.0 41.0 68-69 36.5191779050937 37.0 35.0 40.0 33.0 41.0 70-71 36.19277247798811 36.5 35.0 39.0 33.0 41.0 72-73 35.85836860226175 36.0 35.0 39.0 33.0 41.0 74-75 35.51569682783773 35.5 35.0 39.0 32.0 40.5 76-77 33.66612141583768 34.5 32.5 36.5 29.5 39.0 78-79 34.93615734251459 35.0 34.5 37.0 32.0 39.0 80-81 34.84027870391791 35.0 35.0 36.5 33.0 39.0 82-83 34.62002503980513 35.0 35.0 36.0 33.0 37.5 84-85 34.41562538274158 35.0 35.0 36.0 32.0 37.0 86-87 34.21299824449193 35.0 35.0 35.5 32.0 37.0 88-89 34.054503082345576 35.0 35.0 35.0 32.0 36.0 90-91 33.909749193691056 35.0 34.0 35.0 32.0 36.0 92-93 33.81601731012615 35.0 34.0 35.0 32.0 36.0 94-95 33.716943374658086 35.0 34.0 35.0 31.0 36.0 96-97 33.66808445490794 35.0 34.0 35.0 31.0 35.0 98-99 33.624755385599386 35.0 34.0 35.0 31.0 35.0 100-101 32.79197501462924 34.5 33.0 35.0 28.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 5.0 14 8.0 15 34.0 16 83.0 17 156.0 18 248.0 19 444.0 20 708.0 21 1047.0 22 1419.0 23 1543.0 24 1503.0 25 1817.0 26 2262.0 27 2982.0 28 3888.0 29 4564.0 30 5294.0 31 6048.0 32 7892.0 33 10428.0 34 17653.0 35 34066.0 36 87872.0 37 198512.0 38 267743.0 39 76593.0 40 17.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.13625859735003 17.73727318720687 12.588161295174544 24.538306920268553 2 16.191363988949824 18.996366506538926 39.47293931929834 25.339330185212905 3 20.304151980730236 24.113604507164922 27.85188410924976 27.730359402855083 4 12.736006967597948 15.908441408216866 37.91788576949771 33.437665854687474 5 13.991807628975408 37.30318577085857 34.93352203911109 13.771484561054939 6 32.53351115223929 35.635997441585126 18.251432304070327 13.579059102105248 7 29.12442333600969 30.130642461521713 21.21361403317774 19.531320169290854 8 26.27995590816924 34.97475606602888 19.60045180517943 19.14483622062246 9 26.471837023529254 15.519780085189772 19.143203189853438 38.86517970142754 10-11 26.304179197909722 24.79559898207749 27.691234707347277 21.208987112665515 12-13 26.758161751697674 22.47860049263095 27.46261039968428 23.3006273559871 14-15 23.586407740565846 24.468312398786114 24.86302954424833 27.082250316399715 16-17 23.75100363349346 27.181048677925506 25.79106732169345 23.27688036688758 18-19 23.462501530966346 26.639698977994907 26.827089258740116 23.070710232298627 20-21 24.307383284659416 25.571771122802527 26.799075150172424 23.321770442365633 22-23 24.191960327618318 25.90939123062362 26.132235375130048 23.76641306662802 24-25 24.05937171691879 25.54155530273751 26.397674013510645 24.001398966833055 26-27 23.867507148038218 26.60077270939567 26.22510094350022 23.30661919906589 28-29 23.70097128602516 26.465060513147133 26.52432842178609 23.309639779041618 30-31 23.79585685075749 25.81109171880475 26.56147191007413 23.831579520363622 32-33 23.612568366245753 25.990604616856437 26.79909203365681 23.597734983240997 34-35 24.283088698104184 25.79451729480683 26.277164649228396 23.645229357860593 36-37 23.651538678232324 25.76253471943431 26.687320278871397 23.89860632346197 38-39 23.767810241824638 26.058816324864253 26.20415606330716 23.969217370003946 40-41 23.989358082821877 25.99839418641046 26.444211586353305 23.568036144414354 42-43 23.886953445014495 25.938652477443764 26.57567056325953 23.598723514282216 44-45 24.14825118100913 25.724495170485863 26.40036855923011 23.726885089274898 46-47 23.842241213168723 25.692190035677825 26.28023745266167 24.18533129849178 48-49 23.62814275507774 25.738305038614634 26.71255060728745 23.921001599020176 50-51 24.000040825769226 25.809643046691072 26.301593565858774 23.888722561680932 52-53 24.02514867384293 26.156117741518447 25.947702189622092 23.871031395016534 54-55 24.082644965502226 25.607555489024676 26.276825932528613 24.03297361294449 56-57 24.016462271918734 25.833082688347798 26.081731587120338 24.068723452613128 58-59 24.159337816864976 25.89974678029787 26.34260897976965 23.5983064230675 60-61 24.104279312391437 26.23733331155289 26.04178577846023 23.616601597595437 62-63 23.77420627900331 25.79304056720602 26.463807955581565 23.96894519820911 64-65 24.000176911666642 25.5199842140359 26.196331124205596 24.283507750091857 66-67 23.744267381571248 25.84053454540506 26.054121361403315 24.361076711620374 68-69 24.07420763986228 25.674101492862295 26.363580692132878 23.88811017514255 70-71 24.14197841677667 25.572445327490712 26.38344923315597 23.90212702257665 72-73 23.794891335410913 25.760107780030754 26.438904236353988 24.00609664820435 74-75 23.95860267000531 25.614223697998177 26.371949974824112 24.055223657172405 76-77 23.848353731516948 25.29413325694363 26.357102371505732 24.500410640033696 78-79 23.996793604629403 25.224573563705672 26.271143190186468 24.507489641478454 80-81 23.653444548555612 25.89523694816829 26.116183978720493 24.335134524555606 82-83 23.557954013478057 25.861090546852033 26.484641220210552 24.09631421945935 84-85 23.905614852092828 25.486752520008327 26.492238224651242 24.115394403247603 86-87 23.51659567519018 26.21953376971544 26.2877808472708 23.97608970782358 88-89 23.992488058462502 25.485146224296777 25.834750894764774 24.687614822475947 90-91 23.874501585400704 25.573125756977806 25.952601281929155 24.599771375692335 92-93 23.8759304873236 25.68709769606576 26.400936270974242 24.036035545636405 94-95 23.838710994379653 25.510798415960156 26.30050487867942 24.34998571098077 96-97 24.084618211014792 25.80283875182015 26.194085706898196 23.918457330266865 98-99 23.04492195473783 26.012138862049728 26.44815807737844 24.494781105834 100-101 23.52722491664244 25.725195465566536 26.141285364407192 24.606294253383837 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 2.5 4 3.0 5 1.0 6 3.0 7 6.5 8 15.0 9 26.0 10 26.0 11 32.0 12 36.0 13 29.0 14 37.5 15 52.0 16 61.5 17 62.5 18 58.0 19 73.0 20 92.0 21 114.0 22 142.0 23 174.0 24 232.0 25 342.5 26 461.0 27 598.5 28 780.5 29 1129.0 30 1763.0 31 2942.5 32 4921.5 33 7471.5 34 10499.0 35 13624.0 36 16847.0 37 19625.5 38 21138.5 39 21753.5 40 21818.5 41 21889.5 42 22404.5 43 22994.5 44 23745.5 45 25274.0 46 26835.5 47 28297.0 48 29678.0 49 31573.5 50 33688.5 51 33548.5 52 32017.5 53 32186.0 54 33194.0 55 32235.5 56 28155.0 57 24216.0 58 22266.0 59 20359.0 60 16933.0 61 12955.0 62 10357.5 63 7454.5 64 4645.5 65 3061.0 66 2251.0 67 1802.5 68 1325.5 69 849.5 70 534.5 71 345.5 72 236.5 73 174.0 74 121.5 75 88.5 76 60.0 77 33.0 78 18.5 79 11.5 80 8.0 81 5.0 82 2.5 83 1.0 84 1.0 85 0.5 86 0.5 87 0.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4763006409645768 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0010886871793476041 22-23 0.0015649878203121811 24-25 2.7217179483690103E-4 26-27 0.0017691166664398567 28-29 0.004218662819971967 30-31 3.402147435461263E-4 32-33 1.3608589741845051E-4 34-35 0.00387844807642584 36-37 0.0014969448716029559 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.01047861410122069 46-47 0.08444129934814856 48-49 6.804294870922526E-4 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.008029067947688581 58-59 0.039464910251350654 60-61 0.030755412816569818 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 2.041288461276758E-4 78-79 0.006600166024794851 80-81 0.005239307050610345 82-83 8.165153845107032E-4 84-85 0.0014969448716029559 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06715839037600534 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 734830.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.501864880073 #Duplication Level Percentage of deduplicated Percentage of total 1 78.67113436930076 49.17092610312103 2 13.37851638128767 16.723644463181703 3 4.035297774882174 7.566409088296347 4 1.5918886217518093 3.979840301634289 5 0.7461117593823637 2.331668818517502 6 0.42443267092942244 1.591670006947155 7 0.23719475362977976 1.0377580109141489 8 0.1639135460727453 0.8195921846921876 9 0.12022522441423018 0.6762870658363201 >10 0.5178765491636486 5.9379912838628135 >50 0.05888546620818729 2.6291980379561113 >100 0.050815326936266274 5.950532379891197 >500 0.003489464509070384 1.4322225614980535 >1k 2.18091531816899E-4 0.15225969365121592 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 1117 0.15200794741640924 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 959 0.13050637562429407 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 939 0.12778465767592503 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 860 0.11703387177986746 No Hit GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 807 0.10982131921668957 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 1.3608589741845051E-4 0.0 0.0 0.0 0.0 14-15 1.3608589741845051E-4 0.0 0.0 0.0 0.0 16-17 1.3608589741845051E-4 0.0 0.0 0.0 0.0 18-19 1.3608589741845051E-4 0.0 0.0 0.0 0.0 20-21 1.3608589741845051E-4 0.0 0.0 1.3608589741845051E-4 1.3608589741845051E-4 22-23 1.3608589741845051E-4 0.0 0.0 2.0412884612767577E-4 1.3608589741845051E-4 24-25 1.3608589741845051E-4 0.0 0.0 4.0825769225535154E-4 1.3608589741845051E-4 26-27 2.0412884612767577E-4 0.0 0.0 5.443435896738021E-4 1.3608589741845051E-4 28-29 2.7217179483690103E-4 0.0 0.0 0.0013608589741845051 1.3608589741845051E-4 30-31 2.7217179483690103E-4 0.0 0.0 0.004490834614808868 1.3608589741845051E-4 32-33 2.7217179483690103E-4 0.0 0.0 0.009798184614128437 1.3608589741845051E-4 34-35 2.7217179483690103E-4 0.0 0.0 0.01564987820312181 2.7217179483690103E-4 36-37 2.7217179483690103E-4 0.0 0.0 0.025652191663377927 2.7217179483690103E-4 38-39 2.7217179483690103E-4 0.0 0.0 0.04531660384034403 2.7217179483690103E-4 40-41 2.7217179483690103E-4 0.0 0.0 0.06988010832437434 2.7217179483690103E-4 42-43 2.7217179483690103E-4 0.0 0.0 0.09437556985969545 2.7217179483690103E-4 44-45 2.7217179483690103E-4 0.0 0.0 0.1230896942149885 2.7217179483690103E-4 46-47 2.7217179483690103E-4 0.0 0.0 0.15493379421090592 2.7217179483690103E-4 48-49 2.7217179483690103E-4 0.0 0.0 0.19705237946191637 2.7217179483690103E-4 50-51 2.7217179483690103E-4 0.0 0.0 0.23576881727746551 2.7217179483690103E-4 52-53 2.7217179483690103E-4 0.0 0.0 0.27700284419525606 2.7217179483690103E-4 54-55 2.7217179483690103E-4 0.0 0.0 0.32163901854850785 4.082576922553516E-4 56-57 2.7217179483690103E-4 0.0 0.0 0.37552903392621423 5.443435896738022E-4 58-59 2.7217179483690103E-4 0.0 0.0 0.43547487173904165 6.804294870922527E-4 60-61 4.082576922553516E-4 0.0 0.0 0.5042662928840684 6.804294870922527E-4 62-63 4.082576922553516E-4 0.0 0.0 0.5760516037723011 6.804294870922527E-4 64-65 4.082576922553516E-4 0.0 0.0 0.653688608249527 6.804294870922527E-4 66-67 4.082576922553516E-4 0.0 0.0 0.7504456813140454 6.804294870922527E-4 68-69 4.082576922553516E-4 0.0 0.0 0.8580215832233307 6.804294870922527E-4 70-71 4.082576922553516E-4 0.0 0.0 0.9747832832083612 6.804294870922527E-4 72-73 4.082576922553516E-4 0.0 0.0 1.1015472966536477 6.804294870922527E-4 74-75 4.082576922553516E-4 0.0 0.0 1.2264061075350763 7.484724358014779E-4 76-77 4.082576922553516E-4 0.0 0.0 1.357184654954207 8.165153845107032E-4 78-79 4.082576922553516E-4 0.0 0.0 1.5106895472422193 8.165153845107032E-4 80-81 4.082576922553516E-4 0.0 0.0 1.6790958452975517 8.165153845107032E-4 82-83 4.082576922553516E-4 0.0 0.0 1.8649891811711552 8.165153845107032E-4 84-85 4.082576922553516E-4 0.0 0.0 2.0665323952478802 8.165153845107032E-4 86-87 4.082576922553516E-4 0.0 0.0 2.2833172298354723 8.165153845107032E-4 88-89 4.082576922553516E-4 0.0 0.0 2.5220799368561435 8.165153845107032E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 615 0.0 44.21949 1 GTATCAA 990 0.0 37.590088 1 AAACCGT 65 1.3299417E-4 36.528072 6 ATCAACG 1295 0.0 28.601902 3 CGCGGTC 100 4.9603175E-5 28.491896 9 TCAACGC 1310 0.0 28.2744 4 GTACCGT 85 6.415624E-4 27.93323 6 CAACGCA 1405 0.0 26.36261 5 AACCGTG 145 7.900653E-7 26.199446 7 GTACATG 2375 0.0 26.115223 1 ACCGTGC 185 8.983989E-9 25.668373 8 TACCGTG 130 1.0036774E-5 25.56965 7 AACGCAG 1465 0.0 25.282911 6 CCGTGCG 115 1.2836144E-4 24.775562 9 TACATGG 2530 0.0 24.587868 2 ACATGGG 2500 0.0 24.503029 3 ACGCAGA 1520 0.0 24.368069 7 CGCAGAG 1520 0.0 24.368069 8 ATAGCGT 140 1.7822662E-5 23.743248 5 TAACCCG 140 1.7822662E-5 23.743248 4 >>END_MODULE