##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224548_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 764230 Sequences flagged as poor quality 0 Sequence length 101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.3926043206888 34.0 31.0 34.0 31.0 34.0 2 32.55172264894076 34.0 31.0 34.0 31.0 34.0 3 32.69936537429831 34.0 31.0 34.0 31.0 34.0 4 35.96649830548395 37.0 37.0 37.0 35.0 37.0 5 35.98856626931683 37.0 37.0 37.0 35.0 37.0 6 36.08765816573545 37.0 37.0 37.0 35.0 37.0 7 36.058833073812856 37.0 37.0 37.0 35.0 37.0 8 36.091151878361224 37.0 37.0 37.0 35.0 37.0 9 37.84189968988394 39.0 39.0 39.0 37.0 39.0 10-11 37.930585687554796 39.0 39.0 39.0 37.0 39.0 12-13 37.94486672860265 39.0 39.0 39.0 37.0 39.0 14-15 39.4996310011384 41.0 40.0 41.0 38.0 41.0 16-17 39.34523769022415 41.0 40.0 41.0 37.5 41.0 18-19 39.43553380526805 41.0 40.0 41.0 37.0 41.0 20-21 39.50355848370255 41.0 40.0 41.0 38.0 41.0 22-23 39.47216871884119 41.0 40.0 41.0 37.5 41.0 24-25 39.4417760360101 41.0 40.0 41.0 37.0 41.0 26-27 39.306834329979196 41.0 40.0 41.0 37.0 41.0 28-29 39.24393834316894 41.0 40.0 41.0 36.5 41.0 30-31 39.18464794629889 41.0 40.0 41.0 36.0 41.0 32-33 39.016308572026745 41.0 39.5 41.0 36.0 41.0 34-35 39.04531292935373 41.0 39.0 41.0 36.0 41.0 36-37 39.061497847506644 41.0 39.0 41.0 36.0 41.0 38-39 38.97933213823064 41.0 39.0 41.0 35.5 41.0 40-41 38.92850843332505 41.0 39.0 41.0 35.0 41.0 42-43 38.82939625505411 41.0 39.0 41.0 35.0 41.0 44-45 38.71359800060192 41.0 39.0 41.0 35.0 41.0 46-47 38.608081991023646 40.0 39.0 41.0 35.0 41.0 48-49 38.47668568362927 40.0 38.0 41.0 34.5 41.0 50-51 37.27600395168994 39.0 36.5 40.0 32.5 40.5 52-53 37.63361488033708 39.5 37.5 40.5 33.5 40.5 54-55 38.166672991115234 40.0 38.0 41.0 34.0 41.0 56-57 38.095464061866195 40.0 37.0 41.0 34.0 41.0 58-59 38.02128416837863 40.0 37.0 41.0 34.0 41.0 60-61 37.84145087211965 40.0 36.5 41.0 34.0 41.0 62-63 37.60768355076351 40.0 36.0 41.0 33.0 41.0 64-65 37.40382869031574 39.5 35.5 41.0 33.0 41.0 66-67 37.19257815055677 39.0 35.0 41.0 33.0 41.0 68-69 36.92394501655261 39.0 35.0 41.0 32.5 41.0 70-71 36.637210002224464 38.5 35.0 40.5 32.0 41.0 72-73 36.308842233359066 37.0 35.0 40.0 32.0 41.0 74-75 35.982664250291144 37.0 35.0 39.5 32.0 41.0 76-77 35.576735406880125 36.5 35.0 39.0 31.0 41.0 78-79 35.24516506810777 36.0 35.0 39.0 31.0 39.5 80-81 34.84721288093898 35.5 35.0 37.0 31.0 39.0 82-83 34.49895973725187 35.0 35.0 37.0 31.0 39.0 84-85 34.18143883385892 35.0 34.5 37.0 30.0 38.0 86-87 33.876013765489446 35.0 34.0 36.0 30.0 37.0 88-89 33.648985253130604 35.0 34.0 36.0 30.0 37.0 90-91 33.42884275676171 35.0 34.0 35.5 29.5 36.5 92-93 33.24663844654096 35.0 34.0 35.0 29.0 36.0 94-95 33.10053583345328 35.0 34.0 35.0 29.0 36.0 96-97 32.95036049356869 35.0 34.0 35.0 29.0 36.0 98-99 32.87443963204794 35.0 34.0 35.0 29.0 35.5 100-101 31.78612786726509 34.5 32.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 6.0 7 109.0 8 460.0 9 392.0 10 341.0 11 592.0 12 898.0 13 1022.0 14 1127.0 15 1149.0 16 1183.0 17 1312.0 18 1433.0 19 1566.0 20 1834.0 21 2218.0 22 2602.0 23 2688.0 24 2810.0 25 2982.0 26 3160.0 27 3531.0 28 4065.0 29 4615.0 30 5648.0 31 7116.0 32 9206.0 33 12913.0 34 20646.0 35 35534.0 36 73634.0 37 148259.0 38 286489.0 39 122676.0 40 14.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.34624674172441 20.64537773718084 13.639348043462022 23.369027477632734 2 14.687201496931552 20.60034282872957 41.43412323515172 23.278332439187153 3 19.493055719119738 25.84104702012232 29.483425060126194 25.18247220063175 4 12.120827499574736 17.24467764939874 40.36821375763841 30.266281093388116 5 12.997003519882758 38.45622391164964 36.05655365531319 12.490218913154418 6 29.170275964042236 38.69607317168915 19.40122737919213 12.732423485076483 7 26.411682346937443 31.84695706789841 23.490441359276655 18.250919225887493 8 23.973672847179515 37.05716865341586 21.50216557842534 17.466992920979287 9 24.949949622495847 16.945291338994807 21.28757049579315 36.8171885427162 10-11 24.172107873284222 26.745613231618755 29.672022820355124 19.4102560747419 12-13 24.710754615757036 24.20501681430983 29.509833427109637 21.574395142823498 14-15 21.612858254590247 26.304914262376304 26.67582545247958 25.406402030553863 16-17 21.7392756215674 29.46365667322304 27.4611921417852 21.335875563424363 18-19 21.70430926615255 28.848353725256143 28.39745402000974 21.04988298858157 20-21 22.205858770319317 27.756668924823032 28.51318403319817 21.524288271659483 22-23 22.126430949426965 28.12042726341254 27.882964131740646 21.870177655419848 24-25 21.811674956500458 28.050350188492562 28.150665793294888 21.987309061712093 26-27 21.86782774819099 28.561166141083184 28.104431911858995 21.466574198866834 28-29 21.844405480025646 28.296651531606976 28.226188451120738 21.63275453724664 30-31 22.04192455150936 27.964225429517292 28.15709930256598 21.836750716407362 32-33 21.778064195333865 27.92699841670701 28.376339583633197 21.918597804325923 34-35 22.2588749460241 27.83821624380095 27.944074427855487 21.95883438231946 36-37 21.791810336647476 27.816427883831985 28.432161047368066 21.959600732152474 38-39 21.807392092332453 28.174287976236435 28.026092816624033 21.992227114807083 40-41 22.104971822609045 27.793251951610653 28.409732568326817 21.692043657453482 42-43 21.94316551328413 27.901737957855353 28.22606341390327 21.929033114957246 44-45 21.978372874879113 27.88199174750992 28.073254263328508 22.06638111428246 46-47 22.165905551993507 27.577888855449277 28.036389568585374 22.21981602397184 48-49 21.66991612472685 27.961215864334036 28.265967051803777 22.102900959135336 50-51 21.893278201588526 28.00354605288984 28.06059694071157 22.04257880481007 52-53 21.845517710636848 27.939429229420465 27.857843842822188 22.3572092171205 54-55 21.91323292726012 27.67334441202256 28.101160645355456 22.312262015361867 56-57 21.983761433076427 27.761472331627914 28.086178244769243 22.16858799052641 58-59 21.940910875539853 27.88051302185578 28.19945033372595 21.97912576887842 60-61 21.92680355636639 27.96538909781447 28.037631470976432 22.070175874842707 62-63 21.932442965661266 27.68826616526493 28.22040559351773 22.158885275556077 64-65 22.148887243706685 27.39791306237575 27.94645259224203 22.506747101675533 66-67 21.673292173395236 27.83733644813946 27.950935259801664 22.538436118663643 68-69 21.823076822422568 27.71502034727765 28.362142287007835 22.09976054329194 70-71 21.94143124452063 27.634285489970296 28.146892951074935 22.277390314434136 72-73 21.877052719730973 27.678905565078576 28.338654593512423 22.10538712167803 74-75 21.915261112492313 27.61603182288055 28.125891420122212 22.342815644504928 76-77 21.814571529513366 27.402679821519698 28.13348075841043 22.64926789055651 78-79 22.031669002775846 27.218093132886008 28.144946086264593 22.605291778073557 80-81 21.716003912239103 27.638764685626448 27.95116771433846 22.69406368779599 82-83 21.75948564168125 27.913247201095015 28.034086319453856 22.29318083776988 84-85 21.985385790904896 27.50599653787881 28.177739673356395 22.3308779978599 86-87 21.668964542015768 27.83348979834998 28.166518057634114 22.331027602000134 88-89 22.097266009255762 27.427674219670884 27.83646712869123 22.638592642382125 90-91 21.879211755623306 27.260052601965377 28.012967300420033 22.847768341991284 92-93 21.845379582975934 27.465305243846345 28.329149221964656 22.360165951213066 94-95 22.061879277180953 27.266006307001817 27.981105164675558 22.691009251141672 96-97 22.18415921908326 27.32423485076482 28.180521570731326 22.311084359420594 98-99 21.65031348772514 27.43297290259603 28.189033458100337 22.727680151578493 100-101 22.181238585857262 27.039555936663373 27.8412133192818 22.937992158197567 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1.0 1 1.5 2 2.0 3 2.0 4 2.0 5 2.0 6 1.5 7 3.0 8 9.5 9 10.5 10 16.5 11 22.0 12 22.5 13 24.5 14 21.0 15 25.5 16 28.0 17 30.5 18 41.0 19 55.0 20 58.0 21 71.5 22 98.5 23 114.0 24 125.5 25 167.5 26 247.5 27 346.0 28 514.0 29 988.5 30 2074.0 31 4235.5 32 7991.0 33 13530.0 34 20236.0 35 27263.0 36 34502.0 37 40241.5 38 43403.5 39 44481.0 40 43227.0 41 40883.5 42 38234.5 43 35213.5 44 31814.5 45 28461.0 46 25780.5 47 23035.5 48 21052.5 49 20360.5 50 20371.0 51 19807.0 52 19038.0 53 19200.5 54 19726.0 55 19478.5 56 16824.5 57 14477.5 58 13511.5 59 12416.0 60 10459.5 61 8094.5 62 6470.0 63 4569.5 64 2854.0 65 1917.0 66 1463.0 67 1309.0 68 1031.0 69 648.5 70 396.5 71 276.0 72 194.5 73 141.0 74 111.5 75 86.0 76 64.0 77 52.0 78 36.5 79 26.5 80 20.5 81 12.0 82 7.0 83 6.5 84 8.0 85 6.5 86 5.0 87 4.0 88 3.0 89 4.0 90 4.5 91 3.5 92 4.5 93 2.5 94 1.0 95 2.5 96 2.5 97 3.0 98 2.5 99 1.0 100 1.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.15348782434607383 2 0.0 3 5.234026405663216E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.03932062337254492 16-17 0.07798699344438192 18-19 0.026431833348599245 20-21 0.04350784449707549 22-23 0.06967797652539157 24-25 0.01851536841003363 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.023749394815696847 38-39 0.004579773104955314 40-41 0.007000510317574552 42-43 0.0037292438140350418 44-45 0.0126925140337333 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.017010585818405453 60-61 0.017730264449184147 62-63 0.031207882443766932 64-65 0.05018122816429609 66-67 0.017991965769467308 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.018188241759679678 80-81 0.061892362246967536 82-83 0.052929092027269274 84-85 0.03238553838504115 86-87 0.06293916752810018 88-89 0.03578765554872224 90-91 0.0 92-93 0.0038600944741766226 94-95 0.0 96-97 0.0 98-99 7.196786307786923E-4 100-101 0.04906899755309265 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 764230.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.2629735959031 #Duplication Level Percentage of deduplicated Percentage of total 1 72.49982842718956 40.06556104079281 2 15.001202757344135 16.580221437717952 3 5.453925978471964 9.042005020269182 4 2.5173469417766454 5.564643103005206 5 1.3689420250206819 3.7825903491520028 6 0.8319447872452084 2.7585445686468697 7 0.52948770335538 2.0482745478918614 8 0.35561267494895993 1.5721771092858277 9 0.24249315259465576 1.2060803420123185 >10 1.0880880413165424 10.222630814405704 >50 0.06939548097654441 2.703995731409535 >100 0.040539686053219906 3.954997162181843 >500 9.538749652260709E-4 0.33367941121812483 >1k 2.3846874130651772E-4 0.16459936201083647 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 1249 0.16343247451683393 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 801 0.1048113787734059 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 0.0 0.0 20-21 0.0 0.0 0.0 0.0 0.0 22-23 0.0 0.0 0.0 1.962759902123706E-4 0.0 24-25 0.0 0.0 0.0 9.81379951061853E-4 0.0 26-27 0.0 0.0 0.0 0.0017664839119113356 0.0 28-29 0.0 0.0 0.0 0.00314041584339793 0.0 30-31 0.0 0.0 0.0 0.010598903471468014 0.0 32-33 0.0 0.0 0.0 0.027086086649307145 0.0 34-35 0.0 0.0 0.0 0.046451984350261044 0.0 36-37 0.0 0.0 0.0 0.08158538659827538 0.0 38-39 0.0 0.0 0.0 0.13601926121717284 0.0 40-41 0.0 0.0 0.0 0.2011828899676799 0.0 42-43 0.0 0.0 0.0 0.27400128233646937 0.0 44-45 0.0 0.0 0.0 0.36343770854323965 0.0 46-47 0.0 0.0 0.0 0.4529395600800806 0.0 48-49 0.0 0.0 0.0 0.5474137367023018 0.0 50-51 0.0 0.0 0.0 0.6512437355246457 0.0 52-53 0.0 0.0 0.0 0.7506248119021761 0.0 54-55 0.0 0.0 0.0 0.8637452075945723 0.0 56-57 0.0 0.0 0.0 0.9987830888606833 0.0 58-59 0.0 0.0 0.0 1.1376156392709 0.0 60-61 0.0 0.0 0.0 1.292019418237965 0.0 62-63 0.0 0.0 0.0 1.4480588304567996 0.0 64-65 0.0 0.0 0.0 1.6169870326995799 0.0 66-67 0.0 0.0 0.0 1.8040380513719692 0.0 68-69 0.0 0.0 0.0 2.0168012247621787 0.0 70-71 0.0 0.0 0.0 2.2399016003035737 0.0 72-73 0.0 0.0 0.0 2.4968922968216374 0.0 74-75 0.0 0.0 0.0 2.7610797796474884 0.0 76-77 0.0 0.0 0.0 3.0325294741111968 0.0 78-79 0.0 0.0 0.0 3.348402967692972 0.0 80-81 0.0 0.0 0.0 3.69267105452547 0.0 82-83 0.0 0.0 0.0 4.075670936759876 6.54253300707902E-5 84-85 0.0 0.0 0.0 4.447679363542389 1.308506601415804E-4 86-87 0.0 0.0 0.0 4.846054198343431 1.308506601415804E-4 88-89 0.0 0.0 0.0 5.2885911309422555 1.308506601415804E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGTGC 65 2.592442E-6 43.835796 8 AGGTACG 55 0.0025837345 34.532772 7 TCAACGC 855 0.0 32.765747 4 GTATCAA 910 0.0 31.874853 1 CCGTGCG 60 0.003944577 31.675766 9 ATCAACG 885 0.0 31.118517 3 TCGCACC 405 0.0 29.352474 1 TCGGACC 35 0.00837799 27.152435 78-79 TATCACG 70 0.008404881 27.132893 2 AATGCGG 90 8.963988E-4 26.379202 7 CGCACCA 465 0.0 25.52826 2 GTACATG 2070 0.0 25.268654 1 CATGGGG 1210 0.0 24.722326 4 CGCAGAG 1125 0.0 24.483105 8 GGCCGTG 545 0.0 24.394712 7 CAACGCA 1150 0.0 24.360619 5 GGTATCA 710 0.0 24.11037 1 AGGCCGT 535 0.0 23.963163 6 GCGTGCG 140 1.7745167E-5 23.756824 9 AAATGCG 120 1.7143475E-4 23.741282 6 >>END_MODULE