##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224548_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 764230 Sequences flagged as poor quality 0 Sequence length 101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.19158237703309 34.0 33.0 34.0 31.0 34.0 2 33.32075945723146 34.0 34.0 34.0 31.0 34.0 3 33.44188791332452 34.0 34.0 34.0 31.0 34.0 4 36.63385106577863 37.0 37.0 37.0 35.0 37.0 5 36.672069926592776 37.0 37.0 37.0 35.0 37.0 6 36.71739528675922 37.0 37.0 37.0 36.0 37.0 7 36.70078902948065 37.0 37.0 37.0 36.0 37.0 8 36.687023540033756 37.0 37.0 37.0 36.0 37.0 9 38.544237991180665 39.0 39.0 39.0 38.0 39.0 10-11 38.57483807230807 39.0 39.0 39.0 37.5 39.0 12-13 38.58137602554205 39.0 39.0 39.0 38.0 39.0 14-15 40.219995289376236 41.0 40.0 41.0 39.0 41.0 16-17 40.233258966541484 41.0 40.0 41.0 39.0 41.0 18-19 40.22682831084883 41.0 40.0 41.0 39.0 41.0 20-21 40.23288080813368 41.0 40.0 41.0 39.0 41.0 22-23 40.17309579576829 41.0 40.0 41.0 39.0 41.0 24-25 40.15762859348625 41.0 40.0 41.0 38.0 41.0 26-27 40.11307721497455 41.0 40.0 41.0 38.0 41.0 28-29 40.08712298653546 41.0 40.0 41.0 38.0 41.0 30-31 40.04008544548107 41.0 40.0 41.0 38.0 41.0 32-33 40.0151583947241 41.0 40.0 41.0 38.0 41.0 34-35 39.95355979220915 41.0 40.0 41.0 38.0 41.0 36-37 39.87843973672847 41.0 40.0 41.0 38.0 41.0 38-39 39.817543148005186 41.0 40.0 41.0 38.0 41.0 40-41 39.724933593289975 41.0 40.0 41.0 37.5 41.0 42-43 39.67507883752273 41.0 40.0 41.0 37.0 41.0 44-45 39.513279379244466 41.0 40.0 41.0 37.0 41.0 46-47 39.35735119008675 41.0 39.5 41.0 36.0 41.0 48-49 39.32322926344163 41.0 39.0 41.0 36.0 41.0 50-51 39.24266385773916 41.0 39.0 41.0 35.0 41.0 52-53 39.088148855710976 41.0 39.0 41.0 35.0 41.0 54-55 38.95843986757913 40.5 38.5 41.0 35.0 41.0 56-57 38.817301728537224 40.0 38.0 41.0 35.0 41.0 58-59 38.6278175418395 40.0 37.5 41.0 35.0 41.0 60-61 38.45032843515696 40.0 37.0 41.0 35.0 41.0 62-63 38.275753372675766 40.0 36.5 41.0 35.0 41.0 64-65 38.0558215458697 40.0 36.0 41.0 34.5 41.0 66-67 37.80849351634979 39.0 35.5 41.0 34.0 41.0 68-69 37.55809703884956 39.0 35.0 41.0 34.0 41.0 70-71 37.26356528793688 39.0 35.0 41.0 34.0 41.0 72-73 36.94545163105347 37.5 35.0 40.0 34.0 41.0 74-75 36.58893853944493 37.0 35.0 39.5 33.5 41.0 76-77 34.60409824267563 35.0 33.0 38.0 30.5 39.0 78-79 35.8316992266726 36.0 35.0 39.0 33.0 39.5 80-81 35.65612839066773 36.0 35.0 37.5 33.0 39.0 82-83 35.34634468680895 35.5 35.0 37.0 33.0 39.0 84-85 35.037687607133975 35.0 35.0 37.0 33.0 38.0 86-87 34.7581310600212 35.0 35.0 36.0 33.0 37.0 88-89 34.53149313688287 35.0 35.0 36.0 33.0 37.0 90-91 34.34369103542127 35.0 35.0 36.0 33.0 36.5 92-93 34.21023840990278 35.0 35.0 35.0 33.0 36.0 94-95 34.081497062402676 35.0 35.0 35.0 33.0 36.0 96-97 34.008992711618234 35.0 35.0 35.0 33.0 36.0 98-99 33.94926854480981 35.0 35.0 35.0 32.0 36.0 100-101 33.19178977532941 34.5 33.5 35.0 30.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 3.0 14 6.0 15 23.0 16 51.0 17 117.0 18 223.0 19 307.0 20 530.0 21 695.0 22 881.0 23 1041.0 24 1113.0 25 1417.0 26 1833.0 27 2660.0 28 3394.0 29 3781.0 30 4244.0 31 4988.0 32 6216.0 33 8280.0 34 13471.0 35 25900.0 36 64637.0 37 151718.0 38 316905.0 39 149779.0 40 17.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.57791496695672 20.563740602022694 13.647065938009831 23.211278493010756 2 14.74098111824974 20.686965965743298 41.70446069900422 22.867592217002734 3 19.326642502911426 26.085079099224057 29.593970401580677 24.99430799628384 4 12.013660808918782 17.5227353021996 40.62572785679704 29.83787603208458 5 12.88695811470369 38.32498069952763 36.28855187574421 12.499509310024468 6 29.18270677675569 38.60500111223061 19.469923975766456 12.742368135247242 7 26.34717297148764 31.805869960613954 23.540164610130457 18.306792457767948 8 23.874618897452336 37.2048990487157 21.33546183740497 17.58502021642699 9 24.76741295159834 17.005613493320073 21.403896732659017 36.82307682242257 10-11 24.191473770985176 26.719901076900932 29.684257357078366 19.404367795035526 12-13 24.801695824555434 24.203054054407705 29.477251612734385 21.517998508302476 14-15 21.61423916883661 26.488622535100692 26.68587990526412 25.21125839079858 16-17 21.59035892336077 29.629300079818904 27.539353336037582 21.240987660782746 18-19 21.549140965416168 28.92709001216911 28.534407181084227 20.98936184133049 20-21 22.180313389381396 27.861689947332263 28.520265628577974 21.437731034708367 22-23 22.090904511073063 28.120978331487223 28.006874988141494 21.781242169298217 24-25 21.940114730159063 28.020760820069402 28.17123947303684 21.867884976734693 26-27 21.758639212409765 28.63232289262887 28.11852063158487 21.49051726337649 28-29 21.846551243583185 28.287771704638686 28.328925691210323 21.536751360567806 30-31 21.987132011378893 27.89039048862765 28.339932637375004 21.78254486261845 32-33 21.834896238494114 27.941315980757064 28.501881309058742 21.721906471690076 34-35 22.2657172636203 27.892323928502964 28.013431047782678 21.82852776009406 36-37 21.80896027049873 27.806725306129927 28.479700818352878 21.904613605018465 38-39 21.79474765450192 28.16364183557306 28.087879303351087 21.953731206573938 40-41 22.013006555618073 28.027753425016027 28.28297763762218 21.676262381743715 42-43 21.87208039464559 27.800792955000457 28.431362286222733 21.895764364131217 44-45 21.985292626226077 27.991643269959937 28.146777993769746 21.876286110044237 46-47 22.110944951797794 27.655049773589745 28.01947992425929 22.214525350353167 48-49 21.65265129632089 27.747685386612897 28.412742133978348 22.186921183087865 50-51 21.910615914057285 27.86556403177054 28.153958886722585 22.069861167449588 52-53 21.89753084804313 27.91849312379781 28.024678434502704 22.159297593656362 54-55 21.95876895698939 27.687410857987775 28.203812988236525 22.15000719678631 56-57 22.08135760456286 27.6779562649386 28.125108369281946 22.11557776121659 58-59 22.049376203102327 27.853786536511805 28.19715136786312 21.89968589252275 60-61 21.90301728510442 28.158927932155425 27.957745050109196 21.98030973263096 62-63 21.899624458605395 27.787446187666013 28.176792326917287 22.1361370268113 64-65 21.99880925899271 27.647763107964877 27.948130798319877 22.40529683472253 66-67 21.713881946534418 27.91528728262434 27.978030174162228 22.39280059667901 68-69 21.93848710466744 27.6851209714353 28.180586996061397 22.19580492783586 70-71 21.938552529997512 27.817410988838436 27.995171610640774 22.24886487052327 72-73 21.868024024181203 27.789081820917787 28.10063724271489 22.24225691218612 74-75 21.840414534891327 27.51861350640514 28.111824974156995 22.529146984546536 76-77 21.704611326215904 27.37668258253111 28.336868495878843 22.58183759537415 78-79 21.94745806073383 27.302480271091333 27.963262125402643 22.786799542772197 80-81 21.593266028514037 27.70356654475029 27.9389153150088 22.764252111726872 82-83 21.544164647738135 27.755943762672143 28.22164400428931 22.478247585300412 84-85 21.796432807804614 27.485869477744796 28.140397754818835 22.577299959631752 86-87 21.42515996493202 27.72071235099381 28.24051659840624 22.613611085667927 88-89 21.839498580270337 27.335880559517424 27.882574617588947 22.94204624262329 90-91 21.705769205605645 27.358648574382055 27.86111510932573 23.074467110686573 92-93 21.669458147416353 27.375004906899758 28.19812098452037 22.757415961163524 94-95 21.682804914750793 27.238527668372086 27.991049814846313 23.087617602030804 96-97 21.78944820276618 27.315794983185693 28.094487261688233 22.800269552359893 98-99 21.06656373081402 27.53248367638015 28.219449642123447 23.181502950682386 100-101 21.541018852409646 27.209966453761968 27.924166123275224 23.324848570553158 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1.0 1 1.0 2 2.0 3 3.0 4 2.0 5 0.5 6 1.5 7 6.5 8 10.5 9 9.5 10 7.0 11 12.0 12 16.0 13 14.5 14 15.0 15 18.0 16 21.5 17 27.0 18 33.5 19 39.0 20 40.5 21 51.0 22 65.5 23 85.5 24 113.5 25 150.5 26 213.0 27 299.0 28 494.5 29 975.0 30 1997.5 31 4145.5 32 8070.0 33 13613.5 34 20109.0 35 27363.5 36 34922.0 37 40275.5 38 42888.5 39 44032.0 40 43431.0 41 41360.5 42 38363.5 43 35560.5 44 32410.0 45 28821.0 46 25815.0 47 23064.0 48 21156.5 49 20823.5 50 21138.5 51 20259.0 52 18990.5 53 18972.5 54 19624.5 55 19292.5 56 16614.5 57 14157.5 58 13331.0 59 12486.0 60 10460.0 61 7900.0 62 6229.5 63 4404.5 64 2653.0 65 1724.5 66 1307.0 67 1145.5 68 890.5 69 546.0 70 322.5 71 217.5 72 170.0 73 139.5 74 101.0 75 63.5 76 45.5 77 30.0 78 21.5 79 14.0 80 7.5 81 6.0 82 5.5 83 3.0 84 1.5 85 0.5 86 0.5 87 1.0 88 0.5 89 0.0 90 0.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.46595920076416786 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 6.542533007079021E-4 22-23 0.0013739319314865943 24-25 2.617013202831608E-4 26-27 0.0033366918336103007 28-29 0.003532967823822671 30-31 0.0010468052811326433 32-33 1.9627599021237064E-4 34-35 0.0039909451343182025 36-37 0.001570207921698965 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.007262211637857713 46-47 0.074846577600984 48-49 0.001243081271345014 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.007916464938565614 58-59 0.04180678591523494 60-61 0.03251638904518273 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 3.925519804247413E-4 78-79 0.007785614278424034 80-81 0.0058882797063711185 82-83 5.888279706371119E-4 84-85 0.0020281852321944963 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06647213535192285 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 764230.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.83014119770073 #Duplication Level Percentage of deduplicated Percentage of total 1 71.46923658908028 38.47199096882072 2 15.305220354260808 16.477643454635647 3 5.796168343462694 9.360256810027199 4 2.615325212842971 5.6313330194097535 5 1.445754160934851 3.891257531014319 6 0.8820209294269206 2.8487586702227023 7 0.5699005515712504 2.1474479011809557 8 0.3673094081786533 1.581785384440064 9 0.2742917163895888 1.3288645640350123 >10 1.1537780636531985 10.609953750750382 >50 0.07215985727420662 2.735534156746304 >100 0.047377057315743 4.418843510325667 >500 0.001457755608912478 0.4963302783913306 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 782 0.10232521623071589 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 0.0 0.0 20-21 0.0 0.0 0.0 0.0 0.0 22-23 0.0 0.0 0.0 1.962759902123706E-4 0.0 24-25 0.0 0.0 0.0 9.81379951061853E-4 0.0 26-27 0.0 0.0 0.0 0.0017664839119113356 0.0 28-29 0.0 0.0 0.0 0.00314041584339793 0.0 30-31 0.0 0.0 0.0 0.010860604791751174 0.0 32-33 0.0 0.0 0.0 0.027544063959802675 0.0 34-35 0.0 0.0 0.0 0.0474333643013229 0.0 36-37 0.0 0.0 0.0 0.08276304253954961 0.0 38-39 0.0 0.0 0.0 0.13765489446894258 0.0 40-41 0.0 0.0 0.0 0.20340735119008677 0.0 42-43 0.0 0.0 0.0 0.27687999685958414 0.0 44-45 0.0 0.0 0.0 0.36697067636706227 0.0 46-47 0.0 0.0 0.0 0.4567996545542572 0.0 48-49 0.0 0.0 0.0 0.5519280844771862 0.0 50-51 0.0 0.0 0.0 0.6554309566491763 0.0 52-53 0.0 0.0 0.0 0.7556625623176269 0.0 54-55 0.0 0.0 0.0 0.8685866820198107 0.0 56-57 0.0 0.0 0.0 1.0057835991782578 0.0 58-59 0.0 0.0 0.0 1.1466443348206692 0.0 60-61 0.0 0.0 0.0 1.3028800230297162 0.0 62-63 0.0 0.0 0.0 1.4605550685003206 0.0 64-65 0.0 0.0 0.0 1.6318385826256492 0.0 66-67 0.0 0.0 0.0 1.8210486371903747 0.0 68-69 0.0 0.0 0.0 2.0368213757638407 0.0 70-71 0.0 0.0 0.0 2.2628004658283505 0.0 72-73 0.0 0.0 0.0 2.521753922248538 0.0 74-75 0.0 0.0 0.0 2.788623843607291 0.0 76-77 0.0 0.0 0.0 3.0628868272640437 0.0 78-79 0.0 0.0 0.0 3.3813773340486506 0.0 80-81 0.0 0.0 0.0 3.7293092393651124 0.0 82-83 0.0 0.0 0.0 4.11492613480235 0.0 84-85 0.0 0.0 0.0 4.490140402758332 0.0 86-87 0.0 0.0 0.0 4.892833309344046 0.0 88-89 0.0 0.0 0.0 5.33864150844641 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 770 0.0 32.220398 1 GTATAGG 310 0.0 30.781273 1 GTATCGC 35 0.008364147 27.16164 94-95 AGCGTCC 70 0.008399038 27.13676 8 TCCGCGC 70 0.008399038 27.13676 8 ATCAACG 905 0.0 26.2372 4 TCAACGC 935 0.0 25.395367 5 GTATCAA 925 0.0 25.273918 1 AGGCCGT 385 0.0 24.669785 6 TCGCACC 260 2.3646862E-11 23.855486 1 GGGCGGT 100 0.0016553022 23.744667 6 GTATTAC 185 2.4330075E-7 23.210743 1 GTAGTAT 270 3.8198777E-11 22.971949 1 CGCACCA 295 5.456968E-12 22.53731 2 CGATTAT 110 0.002803452 21.686806 1 GGCCGTG 440 0.0 21.586061 7 TTATACT 500 0.0 20.895308 4 AAGGCCG 410 0.0 20.848976 5 GTACATG 2125 0.0 20.656044 1 CGGTGCG 70 4.85367E-4 20.356567 30-31 >>END_MODULE