##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224546_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 161094 Sequences flagged as poor quality 0 Sequence length 101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.16451885234708 34.0 33.0 34.0 31.0 34.0 2 33.29066880206587 34.0 34.0 34.0 31.0 34.0 3 33.41596831663501 34.0 34.0 34.0 31.0 34.0 4 36.629613765875824 37.0 37.0 37.0 35.0 37.0 5 36.66221584913156 37.0 37.0 37.0 35.0 37.0 6 36.70063441220654 37.0 37.0 37.0 36.0 37.0 7 36.68257042472097 37.0 37.0 37.0 36.0 37.0 8 36.669304877897375 37.0 37.0 37.0 36.0 37.0 9 38.5169280047674 39.0 39.0 39.0 37.0 39.0 10-11 38.54125231231455 39.0 39.0 39.0 37.5 39.0 12-13 38.53362632996884 39.0 39.0 39.0 37.0 39.0 14-15 40.14378561585161 41.0 40.0 41.0 38.0 41.0 16-17 40.15828336250885 41.0 40.0 41.0 38.0 41.0 18-19 40.148388518504724 41.0 40.0 41.0 38.5 41.0 20-21 40.15621624641514 41.0 40.0 41.0 38.5 41.0 22-23 40.08658919636982 41.0 40.0 41.0 38.0 41.0 24-25 40.056991570139175 41.0 40.0 41.0 38.0 41.0 26-27 39.99791115746086 41.0 40.0 41.0 38.0 41.0 28-29 39.963564751014935 41.0 40.0 41.0 38.0 41.0 30-31 39.89330453027425 41.0 40.0 41.0 38.0 41.0 32-33 39.841952524612964 41.0 40.0 41.0 38.0 41.0 34-35 39.766425192744606 41.0 40.0 41.0 37.0 41.0 36-37 39.651361937750636 41.0 40.0 41.0 37.0 41.0 38-39 39.543409437967895 41.0 40.0 41.0 37.0 41.0 40-41 39.41131885731312 41.0 39.5 41.0 36.0 41.0 42-43 39.32517660496356 41.0 39.0 41.0 35.5 41.0 44-45 39.08301054042981 41.0 39.0 41.0 35.0 41.0 46-47 38.8563012899301 41.0 38.5 41.0 35.0 41.0 48-49 38.74263163122152 40.0 38.0 41.0 35.0 41.0 50-51 38.61410418761717 40.0 38.0 41.0 35.0 41.0 52-53 38.37721144176692 40.0 37.0 41.0 35.0 41.0 54-55 38.19407302568686 40.0 37.0 41.0 35.0 41.0 56-57 37.98923609817871 40.0 36.0 41.0 34.5 41.0 58-59 37.727326902305485 40.0 35.5 41.0 34.0 41.0 60-61 37.50525779979391 39.0 35.0 41.0 34.0 41.0 62-63 37.30858380821135 39.0 35.0 41.0 34.0 41.0 64-65 37.075102114293514 38.5 35.0 41.0 33.5 41.0 66-67 36.82336089488125 38.0 35.0 41.0 33.0 41.0 68-69 36.58710131972637 37.0 35.0 40.5 33.0 41.0 70-71 36.31696711236917 37.0 35.0 40.0 33.0 41.0 72-73 36.03144747787006 36.0 35.0 39.5 33.0 41.0 74-75 35.72290712254957 36.0 35.0 39.0 32.5 41.0 76-77 33.86110904192583 34.5 32.5 36.5 29.5 39.0 78-79 35.15804437160912 35.0 35.0 37.5 32.5 39.0 80-81 35.05723056103889 35.0 35.0 37.0 33.0 39.0 82-83 34.80678051324072 35.0 35.0 37.0 33.0 39.0 84-85 34.56262492706122 35.0 35.0 36.0 33.0 37.5 86-87 34.33324021999578 35.0 35.0 36.0 32.0 37.0 88-89 34.155986566849165 35.0 35.0 36.0 32.0 37.0 90-91 33.98445938396216 35.0 35.0 35.0 32.0 36.0 92-93 33.86411349895092 35.0 35.0 35.0 32.0 36.0 94-95 33.74188362074317 35.0 34.5 35.0 32.0 36.0 96-97 33.67999739282655 35.0 34.0 35.0 31.0 36.0 98-99 33.632022297540566 35.0 34.0 35.0 31.0 35.5 100-101 32.82758203285039 34.5 33.0 35.0 28.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 6.0 15 11.0 16 11.0 17 49.0 18 103.0 19 145.0 20 225.0 21 332.0 22 429.0 23 430.0 24 370.0 25 433.0 26 532.0 27 709.0 28 944.0 29 1064.0 30 1193.0 31 1309.0 32 1537.0 33 2111.0 34 3391.0 35 7104.0 36 20044.0 37 39729.0 38 53142.0 39 25726.0 40 14.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.92611120120757 20.9459712328938 13.191576951385336 22.93634061451329 2 15.32769687263337 20.862353656871143 40.34042236209915 23.469527108396342 3 18.875315033458726 28.254931903112467 29.72550188088942 23.14425118253939 4 12.596372304368877 17.48171874806014 40.51671694786895 29.405191999702033 5 12.303996424447838 39.48750419010019 35.54881001154605 12.65968937390592 6 28.12829776403839 39.09146212770184 19.63201608998473 13.148224018275045 7 25.181571008231217 32.41585658062994 24.29699430146374 18.105578109675097 8 25.03507269047885 35.911331272424796 21.199423938818327 17.854172098278024 9 26.272238568785927 15.800712627410082 21.406135548189255 36.52091325561474 10-11 24.814083702682908 25.957205110059967 29.243485170149103 19.985226017108022 12-13 25.351037282580357 24.242367810098454 28.806473239226786 21.600121668094406 14-15 22.598607024470184 26.136293095956397 26.034489180230175 25.23061069934324 16-17 21.88411734763554 29.051671694786897 27.189715321489317 21.874495636088245 18-19 22.078103467540693 27.931518244006604 28.27883099308478 21.71154729536792 20-21 23.022415623273513 26.923267925980642 28.031013141477285 22.02330330926856 22-23 23.212440057730806 27.415615252106708 27.52611077486537 21.84583391529711 24-25 22.740830635624654 27.066268968021678 27.318917274750376 22.873983121603292 26-27 22.363789860515354 27.900653659687265 27.85875239768333 21.87680408211406 28-29 22.10613876628738 27.753257475588335 28.304188315920815 21.836415442203474 30-31 22.534979577141296 26.904788508572636 28.024631581561078 22.535600332724993 32-33 22.507045575874955 27.247755968564935 28.465057668193726 21.78014078736638 34-35 23.114623328170538 27.186298214956373 27.53672670612738 22.162351750745707 36-37 22.297473462039854 26.887143832640138 28.20162642001366 22.613756285306348 38-39 22.40058599327101 27.307348504599798 27.61462251852955 22.67744298359964 40-41 22.534669199349448 27.033284914397804 28.132953430916114 22.299092455336638 42-43 22.412380349361243 27.227891789886648 28.184786522154763 22.17494133859734 44-45 22.709382236266226 26.990458216673595 27.76429249880495 22.535867048255227 46-47 22.778880532801526 26.7811046809621 27.63131327251096 22.808701513725417 48-49 22.329578784991323 27.084270935822985 27.620605424799884 22.965544854385808 50-51 22.457385129179237 26.95351782189281 27.61369138515401 22.975405663773945 52-53 22.709411896160006 27.307038126807953 27.152780364259378 22.830769612772666 54-55 22.771177076737807 26.68348914298484 27.51281860280333 23.03251517747402 56-57 22.97749896791376 27.13129689008359 27.041901149418152 22.8493029925845 58-59 23.279240338096745 26.60058750830647 27.401735198951677 22.718436954645107 60-61 22.896964127147747 27.372532460677718 27.185002576983504 22.54550083519104 62-63 22.791041255416093 26.86692241796715 27.617415918656192 22.72462040796057 64-65 22.967025463394044 26.621103206823342 27.19623325511813 23.215638074664483 66-67 22.535600332724993 27.07301327175438 26.957863110978685 23.433523284541945 68-69 22.945609395756513 26.717630700088147 27.54664978211479 22.790110122040545 70-71 23.19142860690032 26.750530746024058 27.247135212981238 22.81090543409438 72-73 22.898121593603733 26.83029783852906 27.42467130991843 22.846909257948774 74-75 22.635541981700126 26.80360534843011 27.394254286317306 23.16659838355246 76-77 22.604193824723453 26.331831104820786 27.38959861943958 23.674376451016176 78-79 22.788986838837843 26.15160168860194 27.300720139061337 23.75869133349888 80-81 22.209702951857714 26.962473228419782 27.162988484340566 23.66483533538194 82-83 22.321026739295746 27.24149168955724 27.30139516116517 23.136086409981843 84-85 22.495468315454907 26.618990862137466 27.51291219705999 23.372628625347637 86-87 21.863011657789862 27.686319788446497 27.594758339851268 22.855910213912374 88-89 22.77521198803183 26.38614721839423 26.868474306926394 23.97016648664755 90-91 22.64392218208003 26.72942505617838 26.8749922405552 23.751660521186388 92-93 22.633990092740884 26.76729114678387 27.31293530485307 23.285783455622184 94-95 22.73486287509156 26.441704843135067 27.02862924752008 23.79480303425329 96-97 22.631507070406098 26.74897885706482 27.154642631010468 23.464871441518618 98-99 21.51973382000571 27.269792791786163 27.71052925621066 23.499944131997466 100-101 22.204757674219223 26.909624070426997 27.135144538117927 23.750473717235852 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1.0 1 0.5 2 1.0 3 1.5 4 0.5 5 0.5 6 1.0 7 2.0 8 4.5 9 7.5 10 7.5 11 6.0 12 6.0 13 6.0 14 6.0 15 8.5 16 12.0 17 18.5 18 20.5 19 14.5 20 20.5 21 31.0 22 33.5 23 38.0 24 55.0 25 81.0 26 120.0 27 168.0 28 237.5 29 412.0 30 850.0 31 1571.0 32 2566.5 33 3812.5 34 5154.0 35 6499.0 36 7633.5 37 8136.5 38 7934.5 39 7230.0 40 6315.0 41 5375.0 42 4708.0 43 4295.0 44 3928.0 45 3861.5 46 3960.0 47 4070.0 48 4210.5 49 4746.0 50 5517.5 51 5514.0 52 5170.0 53 5426.0 54 5890.5 55 5801.0 56 4881.0 57 4212.0 58 4099.0 59 4041.5 60 3417.5 61 2461.5 62 1980.0 63 1418.5 64 856.0 65 550.0 66 422.0 67 362.5 68 289.0 69 202.0 70 118.5 71 77.0 72 58.5 73 43.5 74 29.0 75 23.5 76 18.0 77 13.0 78 7.0 79 2.0 80 3.5 81 5.5 82 3.0 83 1.0 84 0.5 85 0.5 86 0.5 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.47922331061367895 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 6.207555836964753E-4 22-23 9.311333755447131E-4 24-25 3.1037779184823767E-4 26-27 6.207555836964753E-4 28-29 0.0018622667510894261 30-31 0.0 32-33 0.0 34-35 0.0034141557103306145 36-37 0.0024830223347859014 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.00806982258805418 46-47 0.08287087042347946 48-49 3.1037779184823767E-4 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.007759444796205941 58-59 0.04655666877723565 60-61 0.03290004593591319 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.008690578171750655 80-81 0.005586800253268278 82-83 9.311333755447131E-4 84-85 0.0037245335021788522 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.08256049263163122 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 161094.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.44588873576918 #Duplication Level Percentage of deduplicated Percentage of total 1 78.17398119122258 43.344258631606394 2 11.862964621585311 13.155052329695705 3 3.8524406627854906 6.408059890498715 4 1.8092252575011194 4.012564093014016 5 1.0143304970891176 2.812022794145033 6 0.6907747424988804 2.298037170844352 7 0.4982086878638603 1.9336536432145206 8 0.30228392297357815 1.3408320607843867 9 0.24070756829377518 1.2011620544526798 >10 1.3849081952530229 14.777086669894596 >50 0.12091356918943125 4.508547804387501 >100 0.04926108374384236 4.208722857462103 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 277 0.17194929668392367 No Hit CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG 254 0.15767191825890475 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 248 0.1539473847567259 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 232 0.1440152954175823 No Hit GAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCAT 224 0.13904925074801047 No Hit ACTTAATACTTCAGTACTTCTAGCATCAGGTGTTTCAATTACATGAGCTC 222 0.13780773958061754 No Hit TCATTTAGGTGAGAAAACCCTCTCTACTTTGGCGCGACTGCGTGAACGCG 214 0.13284169491104572 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 213 0.13222093932734924 No Hit GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 204 0.12663413907408097 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 203 0.1260133834903845 No Hit ATACAAAACCGTGCGCGGCTTAACCCGCGGTCTAATGTTATTAAATATGT 198 0.12290960557190213 No Hit ACATTACCCTCACTTTTGCCACGGGGCGTCATGCGCTGGAGATGCAGCAT 183 0.113598271816455 No Hit ATATACACCAGATTCAGACAGCCAATCACCCGTTGTTCACTGCGCAGCGG 178 0.11049449389797261 No Hit GTATCAACGCAGAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCG 171 0.10614920481209729 No Hit GTATCAGCAATGGGATACCCGAGCCAGCATGCATATCTTCAATGACGACG 166 0.1030454268936149 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 3.1037779184823767E-4 0.0 20-21 0.0 0.0 0.0 6.207555836964753E-4 0.0 22-23 0.0 0.0 0.0 6.207555836964753E-4 0.0 24-25 0.0 0.0 0.0 0.0018622667510894261 0.0 26-27 0.0 0.0 0.0 0.002793400126634139 0.0 28-29 0.0 0.0 0.0 0.0040349112940270895 0.0 30-31 0.0 0.0 0.0 0.008690578171750655 0.0 32-33 0.0 0.0 0.0 0.02079531205383192 0.0 34-35 0.0 0.0 0.0 0.03631420164624381 0.0 36-37 0.0 0.0 0.0 0.06300669174519224 0.0 38-39 0.0 0.0 0.0 0.09683787105665015 0.0 40-41 0.0 0.0 0.0 0.13967000633170695 0.0 42-43 0.0 0.0 0.0 0.1846747861497014 0.0 44-45 0.0 0.0 0.0 0.24302581101717008 0.0 46-47 0.0 0.0 0.0 0.3196891256036848 0.0 48-49 0.0 0.0 0.0 0.39231752889617244 0.0 50-51 0.0 0.0 0.0 0.4606006431027847 0.0 52-53 0.0 0.0 0.0 0.5329186686034242 0.0 54-55 0.0 0.0 0.0 0.6160999168187518 0.0 56-57 0.0 0.0 0.0 0.7188349659205184 0.0 58-59 0.0 0.0 0.0 0.8315021043614288 0.0 60-61 0.0 0.0 0.0 0.9485145318882143 0.0 62-63 0.0 0.0 0.0 1.056526003451401 0.0 64-65 0.0 0.0 0.0 1.189678076154295 0.0 66-67 0.0 0.0 0.0 1.342383949743628 0.0 68-69 0.0 0.0 0.0 1.5177474021378823 0.0 70-71 0.0 0.0 0.0 1.717320322296299 0.0 72-73 0.0 0.0 0.0 1.9113064422014476 0.0 74-75 0.0 0.0 0.0 2.111189740151713 0.0 76-77 0.0 0.0 0.0 2.323177771984059 0.0 78-79 0.0 0.0 0.0 2.587619650638757 0.0 80-81 0.0 0.0 0.0 2.8663389077184753 0.0 82-83 0.0 0.0 0.0 3.1518864762188534 0.0 84-85 0.0 0.0 0.0 3.4569878456056715 0.0 86-87 0.0 0.0 0.0 3.7980930388468845 0.0 88-89 0.0 0.0 0.0 4.141060498839187 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGGCGAA 20 0.0020728179 71.232765 9 GGTATCA 135 0.0 63.554794 1 GTAATAC 45 1.5122654E-5 52.765015 3 CCGTGCG 85 1.2732926E-10 50.281956 9 ACCGTGC 100 6.311893E-10 42.73966 8 AAACCGT 105 1.0186341E-9 40.704437 6 GTATCAA 295 0.0 38.779198 1 TGTAGAG 75 6.8967493E-6 37.99081 2 CACCGTG 50 0.0016136088 37.99081 7 AACCGTG 115 2.4792826E-9 37.16492 7 CTTAATA 90 5.6682256E-7 36.935513 2 GTATCAT 55 0.0025293722 34.66625 1 GTATATT 55 0.0025293722 34.66625 1 TATAACT 85 1.6262291E-5 33.521305 4 GTACATG 620 0.0 33.058743 1 ACACCGT 60 0.0039456272 31.659012 6 ATCAACG 370 0.0 30.80336 3 TCAACGC 385 0.0 29.603228 4 AGTAATA 65 0.0058362507 29.223701 2 CATGGGG 515 0.0 28.58532 4 >>END_MODULE