##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224544_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 882236 Sequences flagged as poor quality 0 Sequence length 101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.870317012681415 34.0 31.0 34.0 30.0 34.0 2 32.0291271269819 34.0 31.0 34.0 31.0 34.0 3 32.16793238997275 34.0 31.0 34.0 31.0 34.0 4 35.35085509999592 37.0 35.0 37.0 35.0 37.0 5 35.37728566959408 37.0 37.0 37.0 35.0 37.0 6 35.486576154226306 37.0 37.0 37.0 35.0 37.0 7 35.46145589162084 37.0 37.0 37.0 35.0 37.0 8 35.48549481091227 37.0 37.0 37.0 35.0 37.0 9 37.216878476960815 39.0 39.0 39.0 35.0 39.0 10-11 37.2947017578063 39.0 39.0 39.0 35.0 39.0 12-13 37.31946327286576 39.0 39.0 39.0 35.0 39.0 14-15 38.821412864584985 41.0 40.0 41.0 36.0 41.0 16-17 38.67250146219379 41.0 40.0 41.0 36.0 41.0 18-19 38.7803994622754 41.0 40.0 41.0 36.0 41.0 20-21 38.85359926368908 41.0 40.0 41.0 36.0 41.0 22-23 38.81743773774818 41.0 40.0 41.0 36.0 41.0 24-25 38.78983117895892 41.0 40.0 41.0 36.0 41.0 26-27 38.65816289518904 41.0 40.0 41.0 36.0 41.0 28-29 38.599082898453474 41.0 39.5 41.0 35.0 41.0 30-31 38.54570262378774 41.0 39.0 41.0 35.0 41.0 32-33 38.379023866629794 41.0 39.0 41.0 35.0 41.0 34-35 38.39977511686216 41.0 39.0 41.0 35.0 41.0 36-37 38.42992634623842 41.0 39.0 41.0 35.0 41.0 38-39 38.3625141118703 41.0 39.0 41.0 35.0 41.0 40-41 38.32358971975752 41.0 39.0 41.0 35.0 41.0 42-43 38.23737242642558 41.0 39.0 41.0 34.5 41.0 44-45 38.14663310044024 41.0 39.0 41.0 34.0 41.0 46-47 38.06903821653163 41.0 39.0 41.0 34.0 41.0 48-49 37.960203959031375 40.0 39.0 41.0 33.0 41.0 50-51 36.81733855793688 39.0 37.0 40.0 31.5 40.5 52-53 37.178581467997226 39.5 37.5 40.5 32.5 41.0 54-55 37.753678154144694 40.0 38.0 41.0 33.0 41.0 56-57 37.72079012871839 40.0 38.0 41.0 33.0 41.0 58-59 37.675563568024884 40.0 38.0 41.0 33.0 41.0 60-61 37.526147198708735 40.0 37.5 41.0 33.0 41.0 62-63 37.30744948063783 40.0 37.0 41.0 32.0 41.0 64-65 37.120175893978484 40.0 36.5 41.0 32.0 41.0 66-67 36.91200710467494 39.5 36.0 41.0 31.5 41.0 68-69 36.62575603353298 39.0 35.5 41.0 31.0 41.0 70-71 36.30779349289759 39.0 35.0 41.0 31.0 41.0 72-73 35.94468600238485 38.0 35.0 40.0 30.5 41.0 74-75 35.573926931115935 37.0 35.0 39.5 30.0 41.0 76-77 35.11060022488314 37.0 35.0 39.0 29.5 41.0 78-79 34.73442140198314 36.0 35.0 39.0 29.0 39.5 80-81 34.28563955676259 36.0 35.0 37.5 29.0 39.0 82-83 33.895903137029094 35.0 34.5 37.0 29.0 39.0 84-85 33.54924759361441 35.0 34.0 37.0 29.0 38.0 86-87 33.21165085079276 35.0 34.0 36.0 28.0 37.0 88-89 32.94740012876373 35.0 34.0 36.0 27.0 37.0 90-91 32.70500126950159 35.0 34.0 35.5 26.5 36.0 92-93 32.49532438032454 35.0 34.0 35.0 26.0 36.0 94-95 32.304941081524674 35.0 34.0 35.0 25.0 36.0 96-97 32.11791912821513 35.0 33.5 35.0 25.0 36.0 98-99 32.007872610049915 35.0 33.0 35.0 24.5 35.0 100-101 30.822741307314594 34.5 31.0 35.0 20.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 5 1.0 6 12.0 7 1654.0 8 7653.0 9 4984.0 10 2979.0 11 2552.0 12 2513.0 13 2232.0 14 1916.0 15 1788.0 16 1717.0 17 1714.0 18 1767.0 19 1860.0 20 2101.0 21 2504.0 22 2898.0 23 2914.0 24 3028.0 25 3214.0 26 3626.0 27 3799.0 28 4450.0 29 5103.0 30 5964.0 31 7527.0 32 9822.0 33 13332.0 34 20478.0 35 34531.0 36 67450.0 37 154123.0 38 369760.0 39 130243.0 40 27.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.85425315855019 21.066045457693193 14.200959740618007 23.878741643138603 2 14.169904651363128 22.131266463848675 41.665722097035264 22.03310678775294 3 19.3928141513476 27.355100800921296 29.081060126905108 24.171024920825996 4 12.230627632515564 18.954338748362115 41.00694145330728 27.80809216581504 5 13.55317624762535 38.477912939394905 35.12620205931293 12.84270875366682 6 26.439410769907372 39.31453715332405 21.351316427803898 12.894735648964675 7 25.63271052190117 32.37784447698802 24.033025176936786 17.95641982417403 8 23.129525433104067 36.839235760046066 23.115130191921434 16.916108614928433 9 25.633277263680014 17.649925870175327 21.493455265937914 35.22334160020675 10-11 23.36580008070403 27.715599907507745 29.944992042945422 18.973607968842803 12-13 24.06311916539339 25.12230287587448 29.89959602646004 20.914981932272088 14-15 21.35172906455609 26.855537570550197 27.45741475154707 24.335318613346637 16-17 21.119610337534674 29.911517173359076 28.141690492165516 20.827181996940734 18-19 21.16610480023083 29.179489824898347 29.159252429479483 20.495152945391343 20-21 22.19085086491399 28.137386134729397 28.883268502344634 20.788494498011982 22-23 21.844514287204973 28.4261106567929 28.431611624849857 21.297763431152266 24-25 21.4200405288591 28.570294897048193 28.684115804837955 21.325548769254752 26-27 21.434060727515085 28.927690549920882 28.707114649594896 20.931134072969137 28-29 21.266815228578295 28.811395136902146 28.856734479209646 21.065055155309917 30-31 21.44329861851024 28.559478416206098 28.783171396315726 21.21405156896794 32-33 21.26834543138117 28.477244184095866 28.85849137872406 21.395919005798902 34-35 21.411504404717103 28.65038379753263 28.8307777057386 21.107334092011662 36-37 21.292262692624913 28.285004095537992 28.997429305912597 21.4253039059245 38-39 21.285498832740398 28.4327322376188 28.87141100970364 21.410357919937155 40-41 21.375901879991158 28.236310977856117 29.107840192249924 21.279946949902797 42-43 21.38511709836807 28.143224889396706 28.895032571720698 21.576625440514526 44-45 21.289259552316974 28.094286407403796 28.93065968970982 21.68579435056941 46-47 21.309830929592536 27.930961783468366 28.995472866670596 21.7637344202685 48-49 20.949949900026752 28.146493681962646 29.140728784588248 21.76282763342235 50-51 20.891235451738538 28.31385252925521 28.92429009924782 21.87062191975843 52-53 20.89066870995969 28.22498741833251 28.916865781944967 21.967478089762828 54-55 20.986788115651596 28.141619702664595 28.895329594348908 21.976262587334908 56-57 20.967518895170905 28.052074501607276 29.032311082295443 21.948095520926373 58-59 21.080611992717397 28.020455684263272 28.980095272428812 21.91883705059052 60-61 21.12896560988868 28.018437829292502 28.65289006512304 22.199706495695782 62-63 21.003084503840466 27.87068326777133 28.816045996012424 22.31018623237578 64-65 21.397054070696406 27.625996935906926 28.674105011527207 22.30284398186946 66-67 20.961529632029222 27.81249628016046 28.600903871410605 22.625070216399717 68-69 21.163214831405654 27.99812068426135 28.649930404109558 22.188734080223433 70-71 21.14060183442979 27.682842232690575 28.590592539864616 22.58596339301502 72-73 21.024023050521627 27.729825126156722 28.729444275681338 22.516707547640312 74-75 20.91679550596439 27.55328506204689 28.752737362791812 22.777182069196904 76-77 20.92767694811819 27.480175372576042 28.735905131960156 22.85624254734561 78-79 21.154097959225318 27.148204012849007 28.856530189895267 22.841167838030408 80-81 20.993406174651312 27.451986653571257 28.725216448498074 22.829390723279356 82-83 21.05669021671335 27.262562229958835 28.827241696056973 22.85350585727084 84-85 21.14007384391417 27.007167270127795 29.06585124300521 22.786907642952826 86-87 21.04464493300141 27.106160014063178 28.97480535535053 22.874389697584878 88-89 21.19838423924598 26.81584579406137 28.917411948125576 23.068358018567075 90-91 21.286877887549362 26.89116064182373 28.874926890310533 22.947034580316377 92-93 21.32706874516483 26.75861404488173 28.904537764641535 23.0097794453119 94-95 21.499802773860964 26.482483145099494 28.998589946454235 23.019124134585304 96-97 21.53346723552428 26.54374793139251 29.005674218689787 22.917110614393426 98-99 21.28774736307575 26.30639045011479 29.049721132969218 23.356141053840236 100-101 21.637940517082033 26.117019889253406 28.935580773230306 23.309458820434255 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.5 3 1.5 4 1.0 5 1.0 6 1.5 7 2.5 8 7.5 9 9.5 10 10.5 11 14.0 12 11.5 13 12.5 14 21.0 15 26.0 16 36.5 17 45.0 18 42.5 19 44.5 20 55.5 21 66.0 22 78.0 23 95.5 24 118.0 25 149.0 26 204.0 27 258.0 28 311.5 29 438.0 30 755.0 31 1506.5 32 2959.0 33 5718.0 34 10742.5 35 18626.5 36 29443.0 37 41440.5 38 52328.0 39 62470.5 40 69490.5 41 71024.0 42 68690.0 43 62982.0 44 55184.5 45 47655.0 46 40565.5 47 33666.0 48 28248.0 49 24130.0 50 20641.5 51 17246.5 52 14484.5 53 13103.0 54 12367.0 55 11734.5 56 10248.5 57 8917.0 58 8204.5 59 7629.0 60 6657.5 61 5216.0 62 4107.5 63 3068.0 64 2209.0 65 1584.0 66 1241.0 67 1072.0 68 812.5 69 553.5 70 389.5 71 270.0 72 185.5 73 140.5 74 107.5 75 89.0 76 77.5 77 49.0 78 32.0 79 27.0 80 17.5 81 13.0 82 10.0 83 6.0 84 2.0 85 2.0 86 3.0 87 2.5 88 3.0 89 3.0 90 4.0 91 3.5 92 1.5 93 1.5 94 0.5 95 1.0 96 3.5 97 4.0 98 2.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.15562729247049542 2 0.0 3 2.2669671153750245E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.03723493487003477 16-17 0.07395980213911017 18-19 0.023293087110478373 20-21 0.037121586514266024 22-23 0.06494860785549444 24-25 0.016832230831659554 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.020232681504722093 38-39 0.004703956764403176 40-41 0.0057807661442063115 42-43 0.0032871023172937855 44-45 0.010654745442262616 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.015188679673012665 60-61 0.015472050562434541 62-63 0.027940369696997175 64-65 0.04635947750941925 66-67 0.0160387923412783 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.016378837408584552 80-81 0.056900874595913115 82-83 0.048286399557488015 84-85 0.02726027956238467 86-87 0.05678752624014436 88-89 0.033834484196972235 90-91 0.0 92-93 0.00323042813940941 94-95 0.0 96-97 0.0 98-99 6.234159567281317E-4 100-101 0.04567938737480674 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 882236.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.86240321140995 #Duplication Level Percentage of deduplicated Percentage of total 1 70.00310856355877 34.90523225248272 2 14.879957890112689 14.839009201711995 3 5.983430289299973 8.950446410173155 4 3.0041091176689103 5.991684004651207 5 1.7264334368159113 4.30420600720876 6 1.0691141971702012 3.1985161907006043 7 0.7080218840947258 2.4712570867063364 8 0.5190019062189012 2.0702945852301777 9 0.35033329953553227 1.572161421584193 >10 1.6106634019206256 13.889204773743899 >50 0.09400911370700264 3.238927905107399 >100 0.05089978663055636 4.300628163152264 >500 9.171132662668281E-4 0.26843199754727165 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.4004506730625364E-4 0.0 2 0.0 0.0 0.0 4.533934230750049E-4 0.0 3 0.0 0.0 0.0 4.533934230750049E-4 0.0 4 0.0 0.0 0.0 4.533934230750049E-4 0.0 5 0.0 0.0 0.0 4.533934230750049E-4 0.0 6 0.0 0.0 0.0 4.533934230750049E-4 0.0 7 0.0 0.0 0.0 4.533934230750049E-4 0.0 8 0.0 0.0 0.0 4.533934230750049E-4 0.0 9 0.0 0.0 0.0 9.067868461500098E-4 0.0 10-11 0.0 0.0 0.0 0.001983596225953146 0.0 12-13 0.0 0.0 0.0 0.002040270403837522 0.0 14-15 0.0 0.0 0.0 0.002436989649028151 0.0 16-17 0.0 0.0 0.0 0.0031170797836406585 0.0 18-19 0.0 0.0 0.0 0.004703956764403176 0.0 20-21 0.0 0.0 0.0 0.006290833745165692 0.0 22-23 0.0 0.0 0.0 0.010881442153800117 0.0 24-25 0.0 0.0 0.0 0.019835962259531464 0.0 26-27 0.0 0.0 0.0 0.030547381879678454 0.0 28-29 0.0 0.0 0.0 0.048343073735372395 0.0 30-31 0.0 0.0 0.0 0.10076668827841984 0.0 32-33 0.0 0.0 0.0 0.21400169569140232 0.0 34-35 0.0 0.0 0.0 0.3589175685417507 0.0 36-37 0.0 0.0 0.0 0.5803435815360063 0.0 38-39 0.0 0.0 0.0 0.9339337773566256 0.0 40-41 0.0 0.0 0.0 1.3387574299847207 0.0 42-43 0.0 0.0 0.0 1.7367801812666905 0.0 44-45 0.0 0.0 0.0 2.15344873707262 0.0 46-47 0.0 0.0 0.0 2.6085990596620405 0.0 48-49 0.0 0.0 0.0 3.075197566184105 0.0 50-51 0.0 0.0 0.0 3.5354485647831195 0.0 52-53 0.0 0.0 0.0 3.964358743012074 0.0 54-55 0.0 0.0 0.0 4.401373328678494 0.0 56-57 0.0 0.0 0.0 4.8944386762725625 0.0 58-59 0.0 0.0 0.0 5.385407079284908 0.0 60-61 0.0 0.0 0.0 5.903409065148101 0.0 62-63 0.0 0.0 0.0 6.413363317751712 0.0 64-65 0.0 0.0 0.0 6.893790323677565 0.0 66-67 0.0 0.0 0.0 7.411055545228261 0.0 68-69 0.0 0.0 0.0 7.972980018951845 0.0 70-71 0.0 0.0 0.0 8.556213983559955 0.0 72-73 0.0 0.0 0.0 9.146475546225727 0.0 74-75 0.0 0.0 0.0 9.706529772079126 0.0 76-77 0.0 0.0 0.0 10.285059779922832 0.0 78-79 0.0 0.0 0.0 10.909609220208651 0.0 80-81 0.0 0.0 0.0 11.562042356013585 0.0 82-83 0.0 0.0 0.0 12.253694022914503 0.0 84-85 0.0 0.0 0.0 12.900516415108882 0.0 86-87 0.0 0.0 0.0 13.55833359781283 0.0 88-89 0.0 0.0 0.0 14.27616873489633 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTAGCG 35 2.7838335E-4 54.300526 9 GTATCAA 1340 0.0 37.259884 1 GGTATCA 795 0.0 37.083572 1 ATCAACG 1510 0.0 32.703754 3 TCAACGC 1535 0.0 32.17112 4 TATCAAC 1675 0.0 29.198708 2 TAGACCG 85 6.4191455E-4 27.931374 5 AACGCAG 1820 0.0 27.133337 6 CGCAGAG 1845 0.0 26.76719 8 CAACGCA 1835 0.0 26.652773 5 AACGGGT 130 1.0044931E-5 25.567951 5 ACGCAGA 1935 0.0 25.275368 7 CATAACG 95 0.0012288396 24.99123 2 ACATGGG 2930 0.0 22.850344 3 GTATAGG 420 0.0 22.643194 1 TCCGCTA 345 0.0 22.022507 8 ATGCGGG 130 2.9466132E-4 21.91663 8 TACATGG 3180 0.0 21.651207 2 GACGTAT 110 0.002881757 21.584558 8 GTACATG 3190 0.0 21.4649 1 >>END_MODULE