##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224543_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 256637 Sequences flagged as poor quality 0 Sequence length 101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.397261501654086 34.0 31.0 34.0 31.0 34.0 2 32.560250470508926 34.0 31.0 34.0 31.0 34.0 3 32.69860931977852 34.0 33.0 34.0 31.0 34.0 4 35.97529584588349 37.0 37.0 37.0 35.0 37.0 5 36.012605353086265 37.0 37.0 37.0 35.0 37.0 6 36.11264159104104 37.0 37.0 37.0 35.0 37.0 7 36.07050814964327 37.0 37.0 37.0 35.0 37.0 8 36.115860144873885 37.0 37.0 37.0 35.0 37.0 9 37.84842014206837 39.0 39.0 39.0 37.0 39.0 10-11 37.935030802261565 39.0 39.0 39.0 37.0 39.0 12-13 37.948551845602935 39.0 39.0 39.0 37.0 39.0 14-15 39.491513304784576 41.0 40.0 41.0 38.0 41.0 16-17 39.3426415520755 41.0 40.0 41.0 37.5 41.0 18-19 39.439038408335506 41.0 40.0 41.0 37.0 41.0 20-21 39.4980478263072 41.0 40.0 41.0 37.5 41.0 22-23 39.46641170213181 41.0 40.0 41.0 37.0 41.0 24-25 39.431905765731365 41.0 40.0 41.0 37.0 41.0 26-27 39.293998916757914 41.0 40.0 41.0 36.5 41.0 28-29 39.226756079598815 41.0 40.0 41.0 36.0 41.0 30-31 39.151560375160244 41.0 40.0 41.0 36.0 41.0 32-33 38.95963169768973 41.0 39.0 41.0 35.0 41.0 34-35 38.9846066623285 41.0 39.0 41.0 35.0 41.0 36-37 38.99199063268352 41.0 39.0 41.0 35.5 41.0 38-39 38.88969244497092 41.0 39.0 41.0 35.0 41.0 40-41 38.812036066506394 41.0 39.0 41.0 35.0 41.0 42-43 38.69127405635197 41.0 39.0 41.0 35.0 41.0 44-45 38.541652216944556 40.5 39.0 41.0 35.0 41.0 46-47 38.39313310239755 40.0 38.0 41.0 34.5 41.0 48-49 38.21991567856544 40.0 38.0 41.0 34.0 41.0 50-51 37.007937281062354 39.0 36.5 40.0 32.0 40.5 52-53 37.34206291376536 39.5 37.0 40.5 33.0 40.5 54-55 37.833665839298305 40.0 37.0 41.0 33.5 41.0 56-57 37.73430955006488 40.0 36.5 41.0 33.0 41.0 58-59 37.63848159072932 40.0 36.0 41.0 33.0 41.0 60-61 37.45365827998301 40.0 35.5 41.0 33.0 41.0 62-63 37.23929129470809 40.0 35.0 41.0 33.0 41.0 64-65 37.05780733097721 39.0 35.0 41.0 33.0 41.0 66-67 36.878039799405386 39.0 35.0 41.0 32.5 41.0 68-69 36.63999540206595 39.0 35.0 41.0 32.0 41.0 70-71 36.39980789987414 38.0 35.0 41.0 32.0 41.0 72-73 36.12355389129393 37.0 35.0 40.0 31.0 41.0 74-75 35.86158075413911 37.0 35.0 40.0 31.0 41.0 76-77 35.52190058331418 36.0 35.0 39.0 31.0 41.0 78-79 35.235529171553594 36.0 35.0 39.0 31.0 40.5 80-81 34.87879767921227 35.5 35.0 38.5 31.0 39.5 82-83 34.5441830289475 35.0 35.0 37.0 30.0 39.0 84-85 34.214852106282414 35.0 34.5 37.0 30.0 39.0 86-87 33.9082965433667 35.0 34.0 36.5 30.0 37.5 88-89 33.665751625837274 35.0 34.0 36.0 30.0 37.0 90-91 33.419136757365465 35.0 34.0 36.0 29.0 37.0 92-93 33.21123220735903 35.0 34.0 35.5 29.0 36.5 94-95 33.03023141635852 35.0 34.0 35.0 29.0 36.0 96-97 32.8784197134474 35.0 34.0 35.0 29.0 36.0 98-99 32.78997962102113 35.0 34.0 35.0 29.0 36.0 100-101 31.711023741705212 34.5 32.0 35.0 24.0 35.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 60.0 8 241.0 9 155.0 10 98.0 11 207.0 12 281.0 13 344.0 14 365.0 15 383.0 16 436.0 17 495.0 18 516.0 19 678.0 20 772.0 21 1054.0 22 1216.0 23 1166.0 24 1031.0 25 1041.0 26 1049.0 27 1203.0 28 1286.0 29 1530.0 30 1832.0 31 2364.0 32 3062.0 33 4416.0 34 7182.0 35 13038.0 36 27909.0 37 48906.0 38 80954.0 39 51354.0 40 13.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.4824152964089 22.237400328627686 13.798069605061336 22.482114769902076 2 14.450371536450318 21.08269657142189 41.57701344700881 22.88991844511898 3 18.22464502252217 28.330787574619304 30.950840879689522 22.493726523169002 4 11.566142060575833 17.785821997607513 42.05200341338154 28.596032528435106 5 11.418072998047826 40.576378308661646 36.42070317218484 11.584845521105686 6 27.07754532666763 40.70925080950915 19.725137061296696 12.488066802526527 7 23.68013965250529 33.49127366669654 25.571137443159014 17.257449237639154 8 23.451411916442293 38.10713186329329 21.871748812525084 16.569707407739337 9 25.054064690594107 16.869352431644696 22.36894913827702 35.70763373948417 10-11 23.497586084625365 27.118264318862828 30.3077888223444 19.0763607741674 12-13 23.45647743700246 25.146802682387964 30.654387325288248 20.74233255532133 14-15 20.946227757313533 27.317234793116217 27.369077549747605 24.367459899822645 16-17 20.797710243657058 30.43831754381518 28.28133743295385 20.482634779573907 18-19 20.450709934404635 29.82270153133806 29.41307152350403 20.313517010753273 20-21 21.46730126803332 28.343058950101153 29.472906653569243 20.716733128296283 22-23 21.387881623581706 28.769446718914494 28.834171638008343 21.008500019495457 24-25 20.935326097546717 28.829478360841016 28.759134043921353 21.476061497690914 26-27 20.930146471475275 29.451326192248196 29.01043107579967 20.60809626047686 28-29 20.83390158083207 29.35157440275564 29.274227800356144 20.54029621605614 30-31 20.765711880983645 28.75949298035747 29.20506396193846 21.269731176720427 32-33 20.777596371528656 28.960555181053394 29.3558606124604 20.90598783495755 34-35 21.082891399135743 28.62876358436235 29.27948814863017 21.008856867871742 36-37 20.805239650482108 28.37572394010492 29.66946239408844 21.149574015324536 38-39 20.77966359277307 28.645077321445623 29.32467213641775 21.250586949363562 40-41 21.144111882225953 28.812245009293648 29.33674165228133 20.706901456199077 42-43 21.1520889063806 28.54212006024249 29.143570789796186 21.162220243580727 44-45 20.967411953821426 28.592917336450874 28.95201909493887 21.487651614788835 46-47 21.20738630828758 28.366525481516696 28.90366548860842 21.5224227215873 48-49 20.94397923915881 28.709617085611193 29.049786273997903 21.29661740123209 50-51 20.86351539333767 28.90405514403613 28.810343013673005 21.42208644895319 52-53 21.04723792750071 28.81852577765482 28.562132506224746 21.572103788619724 54-55 21.260769101883202 28.422830690820106 28.44854794904866 21.86785225824803 56-57 21.090879335403702 28.72559295814711 28.508360057201415 21.67516764924777 58-59 21.39437456766789 28.492317884665972 28.657164291072768 21.456143256593368 60-61 21.21621331961503 28.90489357597582 28.6885964655883 21.19029663882085 62-63 20.958934543158485 28.567503098617898 29.114146067678494 21.359416290545123 64-65 21.505621569361278 28.230843001497007 28.441164545908183 21.822370883233532 66-67 21.076999522589322 28.435359568186914 28.1773629392909 22.31027796993287 68-69 20.93599130289085 28.608501502121676 28.995818997260724 21.459688197726752 70-71 21.574636548899807 28.00219765661226 28.749361939237133 21.6738038552508 72-73 21.163355244956886 28.658572224581803 28.914186185156467 21.263886345304847 74-75 21.08328105456345 28.504268675210508 28.76397401777608 21.648476252449957 76-77 21.19452767917331 28.05402182849706 28.73845158726138 22.012998905068248 78-79 21.22833614585079 28.02085809712733 28.399671071861444 22.35113468516043 80-81 21.075727034898456 28.509047242160424 28.418399373067643 21.996826349873484 82-83 21.089718973983114 28.273357595226635 28.633387458017634 22.00353597277262 84-85 21.19960166583193 27.996032248697716 29.108405747392997 21.695960338077356 86-87 20.733395193612274 29.05178329148667 28.779065234003397 21.43575628089765 88-89 21.24918632162806 27.948244208753813 28.37525482262786 22.42731464699027 90-91 21.08620347027124 27.96966142839887 28.547715255399652 22.396419845930243 92-93 21.668881242864323 27.707075863197637 28.83300277049327 21.791040123444763 94-95 21.455596815735845 27.552730120754216 28.844632691311073 22.147040372198866 96-97 21.39032953159521 28.09142874955677 28.83391716704918 21.684324551798845 98-99 20.798288630027294 28.453863733334895 28.66681083945581 22.08103679718201 100-101 21.249403073804444 27.8757224025183 28.432203802785335 22.44267072089193 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1.0 1 2.0 2 3.5 3 3.0 4 2.5 5 4.0 6 5.5 7 7.5 8 13.0 9 19.5 10 20.0 11 17.0 12 23.5 13 25.0 14 22.0 15 31.0 16 33.5 17 40.0 18 51.5 19 56.0 20 56.5 21 62.5 22 77.5 23 102.0 24 136.5 25 192.5 26 339.5 27 571.0 28 1148.0 29 2389.0 30 4354.5 31 6387.0 32 8769.5 33 11465.0 34 13370.0 35 14413.0 36 15369.0 37 15294.0 38 13838.5 39 12231.0 40 10078.0 41 7974.0 42 6426.0 43 5370.5 44 4951.0 45 4845.0 46 4948.5 47 4810.5 48 4797.5 49 5424.5 50 6283.0 51 6444.0 52 6253.5 53 6863.5 54 7311.5 55 7044.5 56 5974.5 57 5100.0 58 4925.0 59 4664.5 60 3957.0 61 3071.0 62 2480.0 63 1725.5 64 1028.0 65 684.5 66 553.0 67 500.5 68 407.5 69 265.5 70 152.0 71 103.0 72 70.5 73 51.0 74 44.5 75 34.5 76 22.0 77 15.0 78 8.0 79 4.5 80 4.0 81 3.5 82 5.0 83 4.0 84 1.0 85 1.0 86 0.5 87 0.0 88 0.5 89 0.5 90 0.0 91 0.0 92 0.0 93 1.0 94 1.0 95 0.0 96 0.5 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.16365527963621768 2 0.0 3 3.8965542770528025E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.035848299348885775 16-17 0.07422935897785587 18-19 0.024937947373137936 20-21 0.03818623191511746 22-23 0.0650724564267818 24-25 0.016365527963621767 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.02143104852379041 38-39 0.005260348274021283 40-41 0.003896554277052802 42-43 0.0029224157077896015 44-45 0.009546557978779366 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.013443112255832168 60-61 0.01772932196059025 62-63 0.027665535367074893 64-65 0.04870692846316003 66-67 0.01733966653288497 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.017924149674442887 80-81 0.05844831415579203 82-83 0.05085003331553907 84-85 0.026691396797811694 86-87 0.05650003701726563 88-89 0.0335103667826541 90-91 0.0 92-93 0.001558621710821121 94-95 0.0 96-97 0.0 98-99 1.9482771385264012E-4 100-101 0.04461554647225459 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 256637.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.47179881436005 #Duplication Level Percentage of deduplicated Percentage of total 1 68.05682179994923 29.58552465232146 2 14.906095118851203 12.959895362288279 3 5.555531489693511 7.245268416803949 4 3.0695943014123928 5.337631436508225 5 1.969500550684999 4.28088658520748 6 1.3307147368300607 3.470913799126828 7 0.9594944834755958 2.9197665804397595 8 0.7319457481634258 2.5455198645749357 9 0.5133439929572571 2.008438810595833 >10 2.683421775442102 20.2850944661811 >50 0.15726647966328902 4.631297484705836 >100 0.06626952287698341 4.729762541246328 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 498 0.19404840299722953 No Hit GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 481 0.18742426072623977 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 353 0.13754836597996392 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 305 0.11884490545011046 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 284 0.11066214146829957 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 274 0.10676558719124678 No Hit ATACAAAACCGTGCGCGGCTTAACCCGCGGTCTAATGTTATTAAATATGT 271 0.10559662090813093 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 0.0 0.0 20-21 0.0 0.0 0.0 0.0 0.0 22-23 0.0 0.0 0.0 9.741385692632006E-4 0.0 24-25 0.0 0.0 0.0 0.001558621710821121 0.0 26-27 0.0 0.0 0.0 0.0023379325662316814 0.0 28-29 0.0 0.0 0.0 0.003506898849347522 0.0 30-31 0.0 0.0 0.0 0.008182763981810885 0.0 32-33 0.0 0.0 0.0 0.01987242681296929 0.0 34-35 0.0 0.0 0.0 0.039550025912085944 0.0 36-37 0.0 0.0 0.0 0.07345004812244532 0.0 38-39 0.0 0.0 0.0 0.12215697658560536 0.0 40-41 0.0 0.0 0.0 0.1743708038981129 0.0 42-43 0.0 0.0 0.0 0.22463635407209404 0.0 44-45 0.0 0.0 0.0 0.2947743310590445 0.0 46-47 0.0 0.0 0.0 0.3721209334585426 0.0 48-49 0.0 0.0 0.0 0.4582347829814095 0.0 50-51 0.0 0.0 0.0 0.5503882916337084 0.0 52-53 0.0 0.0 0.0 0.6417624894305964 0.0 54-55 0.0 0.0 0.0 0.7446315223447906 0.0 56-57 0.0 0.0 0.0 0.8741919520567962 0.0 58-59 0.0 0.0 0.0 1.024209291723329 0.0 60-61 0.0 0.0 0.0 1.1831887062270834 0.0 62-63 0.0 0.0 0.0 1.33495949531829 0.0 64-65 0.0 0.0 0.0 1.484976834984823 0.0 66-67 0.0 0.0 0.0 1.6745442005634417 0.0 68-69 0.0 0.0 0.0 1.8929460677922512 0.0 70-71 0.0 0.0 0.0 2.1154393170119663 0.0 72-73 0.0 0.0 0.0 2.3507911953459555 0.0 74-75 0.0 0.0 0.0 2.625108616450473 0.0 76-77 1.9482771385264012E-4 0.0 0.0 2.8931915507117054 0.0 78-79 3.8965542770528025E-4 0.0 0.0 3.1871865709153395 0.0 80-81 3.8965542770528025E-4 0.0 0.0 3.530083347295986 0.0 82-83 3.8965542770528025E-4 0.0 0.0 3.867914603116464 0.0 84-85 3.8965542770528025E-4 0.0 0.0 4.2380872594364805 0.0 86-87 3.8965542770528025E-4 0.0 0.0 4.658720293644331 0.0 88-89 3.8965542770528025E-4 0.0 0.0 5.107018863219255 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGCCGTA 20 0.0020746652 71.22896 7 CCGTGCG 75 0.0 63.351665 9 AAACCGT 70 1.8189894E-11 61.05339 6 ACCGTGC 80 1.8189894E-12 59.357464 8 GGTATCA 265 0.0 55.603798 1 AACCGTG 90 2.2555469E-10 47.48597 7 CCCTACA 50 0.0016158208 37.988773 2 GTATCAA 525 0.0 37.120445 1 ATCAACG 500 0.0 37.039055 3 TCAACGC 535 0.0 34.61594 4 TCTAATG 235 0.0 34.351555 2 GTATTAT 135 1.1816155E-8 31.688185 1 ACCCCGA 30 0.003954646 31.657316 52-53 ACATGGG 760 0.0 30.615955 3 CGCAGAG 590 0.0 30.584183 8 TGCGCGG 70 1.6940248E-8 30.550507 12-13 GTGCGCG 70 1.695662E-8 30.54753 10-11 CATGGGA 250 0.0 30.39102 4 GTCTAAT 255 0.0 29.824177 1 ACGCAGA 625 0.0 29.631247 7 >>END_MODULE