##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224543_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 256637 Sequences flagged as poor quality 0 Sequence length 101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.18274839559378 34.0 33.0 34.0 31.0 34.0 2 33.31909272630213 34.0 34.0 34.0 31.0 34.0 3 33.437271320970865 34.0 34.0 34.0 31.0 34.0 4 36.64384714596882 37.0 37.0 37.0 35.0 37.0 5 36.683054275104524 37.0 37.0 37.0 35.0 37.0 6 36.726789200310165 37.0 37.0 37.0 37.0 37.0 7 36.70259159824967 37.0 37.0 37.0 36.0 37.0 8 36.69806769873401 37.0 37.0 37.0 36.0 37.0 9 38.550376601970875 39.0 39.0 39.0 38.0 39.0 10-11 38.580206673238855 39.0 39.0 39.0 37.5 39.0 12-13 38.578614930816684 39.0 39.0 39.0 38.0 39.0 14-15 40.206614790540726 41.0 40.0 41.0 39.0 41.0 16-17 40.22109828278853 41.0 40.0 41.0 39.0 41.0 18-19 40.2259767687434 41.0 40.0 41.0 39.0 41.0 20-21 40.23163456555368 41.0 40.0 41.0 39.0 41.0 22-23 40.16847336899979 41.0 40.0 41.0 39.0 41.0 24-25 40.14261583481727 41.0 40.0 41.0 38.0 41.0 26-27 40.095317510725266 41.0 40.0 41.0 38.0 41.0 28-29 40.061359040200756 41.0 40.0 41.0 38.0 41.0 30-31 40.002339880843365 41.0 40.0 41.0 38.0 41.0 32-33 39.95494803944871 41.0 40.0 41.0 38.0 41.0 34-35 39.88648947735518 41.0 40.0 41.0 38.0 41.0 36-37 39.79335403702506 41.0 40.0 41.0 38.0 41.0 38-39 39.70108168346731 41.0 40.0 41.0 37.0 41.0 40-41 39.58274527835036 41.0 40.0 41.0 37.0 41.0 42-43 39.50294384675631 41.0 40.0 41.0 36.5 41.0 44-45 39.30275057766417 41.0 39.0 41.0 36.0 41.0 46-47 39.10539010353145 41.0 39.0 41.0 35.0 41.0 48-49 39.020049720032574 41.0 39.0 41.0 35.0 41.0 50-51 38.90834135374089 41.0 39.0 41.0 35.0 41.0 52-53 38.724725974820466 40.0 38.0 41.0 35.0 41.0 54-55 38.57619517061063 40.0 37.5 41.0 35.0 41.0 56-57 38.39948058931487 40.0 37.0 41.0 35.0 41.0 58-59 38.20152394237776 40.0 36.5 41.0 35.0 41.0 60-61 38.02327801525111 40.0 36.0 41.0 34.5 41.0 62-63 37.85530535347593 40.0 35.0 41.0 34.0 41.0 64-65 37.67021512876163 39.5 35.0 41.0 34.0 41.0 66-67 37.44440980840643 39.0 35.0 41.0 34.0 41.0 68-69 37.25113876798747 39.0 35.0 41.0 34.0 41.0 70-71 37.007056659795744 38.5 35.0 41.0 34.0 41.0 72-73 36.753765045570205 37.5 35.0 40.0 33.0 41.0 74-75 36.46423352829093 37.0 35.0 40.0 33.0 41.0 76-77 34.50542400355366 35.0 33.0 38.0 30.0 39.0 78-79 35.81981358884339 36.0 35.0 39.0 33.0 40.0 80-81 35.694917334601016 36.0 35.0 39.0 33.0 39.5 82-83 35.39953514107475 35.5 35.0 37.0 33.0 39.0 84-85 35.08533453866745 35.0 35.0 37.0 33.0 39.0 86-87 34.79061281109115 35.0 35.0 37.0 33.0 38.0 88-89 34.54808737633311 35.0 35.0 36.0 33.0 37.0 90-91 34.33098111340142 35.0 35.0 36.0 33.0 37.0 92-93 34.17398894157896 35.0 35.0 36.0 33.0 36.5 94-95 34.01949056449382 35.0 35.0 35.0 32.0 36.0 96-97 33.934929491850355 35.0 35.0 35.0 32.0 36.0 98-99 33.85634573346789 35.0 35.0 35.0 32.0 36.0 100-101 33.093121802390144 34.5 33.5 35.0 29.5 35.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 3.0 15 11.0 16 26.0 17 66.0 18 151.0 19 223.0 20 318.0 21 503.0 22 716.0 23 696.0 24 540.0 25 516.0 26 655.0 27 887.0 28 1135.0 29 1328.0 30 1398.0 31 1642.0 32 2074.0 33 2762.0 34 4669.0 35 9459.0 36 26166.0 37 53009.0 38 87163.0 39 60506.0 40 14.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.80104211931523 22.24114374747985 13.990706268766564 21.96710786443836 2 14.40127495255945 21.34220708627361 41.79249289852983 22.46402506263711 3 17.76478060451143 28.955294832779373 31.156068688458795 22.1238558742504 4 11.425476451174227 17.861804806010046 42.631421034379294 28.08129770843643 5 11.441452323710143 40.01566414819375 37.132993294030086 11.409890234066015 6 26.863234841429723 40.783285340773155 19.820602641084488 12.532877176712635 7 23.612729263512275 33.28865284428979 25.918710084672124 17.179907807525804 8 23.27139110884245 37.912693804868354 22.014362699065217 16.80155238722398 9 25.00769569469718 16.673745406936646 22.80224597388529 35.51631292448088 10-11 23.69631035275506 27.07540222181525 30.42020441323737 18.808083012192316 12-13 23.566944750756903 25.045492271184592 30.895194379610107 20.492368598448394 14-15 21.080748294283367 27.576109446416535 27.452783503547813 23.89035875575229 16-17 20.358521959031627 30.759009807627113 28.395359983166884 20.487108250174373 18-19 20.502889294996436 29.533348659780156 29.982231712496638 19.98153033272677 20-21 21.14544225347722 28.418626490202993 29.925243877966523 20.51068737835326 22-23 21.570396232701228 28.616156755166493 29.16480763123491 20.648639380897365 24-25 21.18194641437678 28.761942985395656 28.937678268052807 21.118432332174752 26-27 20.75841147807044 29.57894388191491 29.06438684713506 20.59825779287959 28-29 21.069182389937108 29.229890969738065 29.262233756517265 20.438692883807562 30-31 20.77982804271461 28.50816436669414 29.571743361642188 21.140264228949064 32-33 20.66619518268056 29.123877546646714 29.81025691980681 20.399670350865915 34-35 21.277325332190316 28.637727467560303 29.31204457779683 20.77290262245256 36-37 20.98117912948603 28.561937419631377 29.187546272844173 21.269337178038423 38-39 20.672389406048232 28.773715403468714 29.212272587351006 21.341622603132052 40-41 20.86858091389784 28.757934358646647 29.765778122406356 20.607706605049156 42-43 20.990543062769593 28.680782583961 29.391319256381582 20.93735509688782 44-45 21.00101711163677 28.609479792213055 29.0687388205402 21.320764275609974 46-47 21.261382470507943 28.24120113093497 29.03110071170908 21.466315686848006 48-49 20.819808832067583 28.247536365159586 29.598297958563396 21.334356844209434 50-51 21.028924122398564 28.640063591765802 28.834306822476886 21.49670546335875 52-53 21.082112088280333 28.922758604565985 28.75871366950206 21.236415637651625 54-55 21.14893799413179 28.578498034188364 28.697148111924626 21.575415859755218 56-57 21.32001652261338 28.95061920831742 28.24139382272483 21.48797044634437 58-59 21.555549925060273 28.35742643920332 28.545701539139195 21.54132209659721 60-61 21.312587210888594 28.876450916347707 28.68273555709731 21.12822631566639 62-63 21.197839750308802 28.68584810452117 28.755206770652713 21.361105374517315 64-65 21.313957067764974 28.220404696127215 28.730853306421132 21.73478492968668 66-67 21.141729368719243 28.476603139843437 28.40821861228116 21.973448879156162 68-69 21.14835351099023 28.23189953124452 29.002053484104007 21.61769347366124 70-71 21.470598549702498 28.301647852803764 28.782287822878228 21.445465774615506 72-73 21.189072503185432 28.867622361545685 28.35639444039636 21.586910694872525 74-75 21.14387247357162 28.20657192844368 28.984908645284975 21.66464695269973 76-77 21.414028846359916 27.77304776618979 28.818889046916734 21.99403434053356 78-79 21.270049724876465 27.86288248406154 28.70949137218836 22.15757641887363 80-81 21.204073719753488 28.338928495580053 28.52772868886157 21.929269095804894 82-83 21.034502241505947 28.428257197464884 28.68835371567846 21.8488868453507 84-85 21.340562909391306 27.89238244795056 29.03156672420713 21.735487918451003 86-87 20.53932207748688 29.052708689705693 28.809758530531447 21.598210702275978 88-89 21.397343329293903 27.67469226962597 28.27456680057825 22.653397600501876 90-91 21.23700012079318 28.052852862213946 28.332820287020187 22.377326729972687 92-93 21.567038268059555 27.884132062017557 28.725008475005552 21.823821194917333 94-95 21.155951791830486 27.463304200095855 28.89158617034956 22.4891578377241 96-97 21.34668812369222 27.967518323546486 28.865479256693305 21.820314296067984 98-99 20.32812883567062 28.35678409582406 28.804303354543574 22.510783713961743 100-101 20.81255482990545 28.223413588069015 28.447412028462814 22.516619553562727 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1.0 1 0.5 2 0.0 3 2.0 4 2.0 5 1.0 6 4.5 7 8.0 8 10.5 9 13.5 10 15.5 11 18.5 12 22.5 13 24.5 14 18.5 15 22.5 16 32.0 17 30.5 18 31.5 19 43.0 20 56.0 21 63.5 22 79.0 23 106.0 24 137.5 25 193.5 26 355.0 27 671.5 28 1263.5 29 2466.5 30 4324.0 31 6621.0 32 9137.0 33 11796.0 34 13664.0 35 14444.5 36 15341.5 37 15329.5 38 13727.0 39 11953.5 40 9916.5 41 7754.0 42 6380.0 43 5533.0 44 4885.5 45 4621.0 46 4602.5 47 4689.0 48 4920.0 49 5514.5 50 6383.5 51 6488.0 52 6179.5 53 6704.5 54 7326.5 55 7243.0 56 6094.5 57 5043.5 58 4879.0 59 4744.0 60 4037.0 61 2985.5 62 2427.5 63 1728.0 64 966.5 65 616.5 66 495.5 67 440.0 68 354.5 69 227.0 70 117.0 71 71.0 72 57.0 73 59.5 74 39.5 75 29.5 76 25.0 77 12.0 78 5.0 79 1.5 80 2.5 81 3.0 82 1.5 83 1.0 84 0.5 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.46602789153551516 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 9.741385692632005E-4 22-23 0.0029224157077896015 24-25 3.8965542770528025E-4 26-27 0.0033120711354948816 28-29 0.004286209704758083 30-31 0.0013637939969684807 32-33 1.9482771385264012E-4 34-35 0.0027275879939369614 36-37 0.0027275879939369614 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.010910351975747846 46-47 0.0826069506735194 48-49 0.001558621710821121 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.007403453126400324 58-59 0.037991404201264824 60-61 0.029224157077896017 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 5.844831415579203E-4 78-79 0.009741385692632006 80-81 0.006429314557137123 82-83 5.844831415579203E-4 84-85 0.0023379325662316814 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0631241792882554 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 256637.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.32666657109354 #Duplication Level Percentage of deduplicated Percentage of total 1 66.80915824145383 28.27808964781442 2 15.465329079399378 13.091916547119492 3 5.921780867114785 7.519477328083461 4 3.1621863519364113 5.3537922941630045 5 1.9697122097507311 4.168567597156553 6 1.3378348621264973 3.3975654081847884 7 1.0003260768853957 2.963832782308875 8 0.6629042642257539 2.244682220835166 9 0.5835126162110862 2.222832955175381 >10 2.8471024921615364 21.071530852847317 >50 0.1746566827160981 4.994229103167023 >100 0.0654962560185368 4.693483263144517 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 392 0.15274492766046985 No Hit GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 366 0.14261388654013257 No Hit ACTTAATACTTCAGTACTTCTAGCATCAGGTGTTTCAATTACATGAGCTC 347 0.13521043341373223 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 347 0.13521043341373223 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 312 0.12157249344404743 No Hit GCATATTCTCGGGGCGCTATCGCTGGATGCGTATTTGATTACCGGCAACG 301 0.11728628373928936 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 280 0.10910351975747846 No Hit ATACAAAACCGTGCGCGGCTTAACCCGCGGTCTAATGTTATTAAATATGT 274 0.10676558719124678 No Hit GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 266 0.10364834376960454 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.008572419409516165 0.0 14-15 0.0 0.0 0.0 0.008572419409516165 0.0 16-17 0.0 0.0 0.0 0.008572419409516165 0.0 18-19 0.0 0.0 0.0 0.008572419409516165 0.0 20-21 0.0 0.0 0.0 0.008767247123368805 0.0 22-23 0.0 0.0 0.0 0.009936213406484646 0.0 24-25 0.0 0.0 0.0 0.010520696548042566 0.0 26-27 0.0 0.0 0.0 0.011300007403453126 0.0 28-29 0.0 0.0 0.0 0.012468973686568966 0.0 30-31 0.0 0.0 0.0 0.01714483881903233 0.0 32-33 0.0 0.0 0.0 0.028834501650190737 0.0 34-35 0.0 0.0 0.0 0.048122445321602106 0.0 36-37 0.0 0.0 0.0 0.08221729524581413 0.0 38-39 0.0 0.0 0.0 0.13131387913667944 0.0 40-41 0.0 0.0 0.0 0.1841121895907449 0.0 42-43 0.0 0.0 0.0 0.23515705062013662 0.0 44-45 0.0 0.0 0.0 0.3060743384624976 0.0 46-47 0.0 0.0 0.0 0.38536921800052215 0.0 48-49 0.0 0.0 0.0 0.47343134466191544 0.0 50-51 0.0 0.0 0.0 0.5675331304527407 0.0 52-53 0.0 0.0 0.0 0.6602711222465973 0.0 54-55 0.0 0.0 0.0 0.7629453274469387 0.0 56-57 0.0 0.0 0.0 0.8930902403005023 0.0 58-59 0.0 0.0 0.0 1.0438868908224457 0.0 60-61 0.0 0.0 0.0 1.2032559607539053 0.0 62-63 0.0 0.0 0.0 1.3561957161282279 0.0 64-65 0.0 0.0 0.0 1.5073820220778766 0.0 66-67 0.0 0.0 0.0 1.6979235262257584 1.9482771385264012E-4 68-69 0.0 0.0 0.0 1.9200271200177683 3.8965542770528025E-4 70-71 0.0 0.0 0.0 2.1464169235145363 3.8965542770528025E-4 72-73 0.0 0.0 0.0 2.385275700697873 5.844831415579203E-4 74-75 0.0 0.0 0.0 2.6619310543686217 7.793108554105605E-4 76-77 0.0 0.0 0.0 2.930988127199118 7.793108554105605E-4 78-79 0.0 0.0 0.0 3.227905563110541 7.793108554105605E-4 80-81 0.0 0.0 0.0 3.5717764780604515 7.793108554105605E-4 82-83 0.0 0.0 0.0 3.912335321874866 7.793108554105605E-4 84-85 0.0 0.0 0.0 4.284845910761113 7.793108554105605E-4 86-87 0.0 0.0 0.0 4.708011705249048 7.793108554105605E-4 88-89 0.0 0.0 0.0 5.157868896534794 7.793108554105605E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTGCG 50 5.5551936E-9 66.48964 9 ACCGTGC 60 3.274181E-10 63.32346 8 AAACCGT 60 2.3446773E-8 55.408028 6 CGTATAC 35 2.785998E-4 54.277252 3 GGTATCA 275 0.0 53.694046 1 AACCGTG 70 7.898416E-8 47.492596 7 GTATCAA 475 0.0 43.119328 1 GTACAAC 70 4.301697E-6 40.70794 6 ACAACGT 55 0.002577879 34.54007 8 ATAGGAG 70 2.0507828E-4 33.923283 3 ATCAACG 600 0.0 33.24482 3 TCAACGC 605 0.0 32.970066 4 CAACGTG 75 3.074646E-4 31.661732 9 AGCGTTA 30 0.0039519467 31.66173 14-15 ACCCTTG 105 1.8963765E-6 31.66173 7 TGCGCGG 60 1.5051228E-7 31.66173 12-13 CGGTCTA 60 1.5051228E-7 31.66173 28-29 CAACGCA 655 0.0 30.453268 5 GCGCGGC 55 2.7328824E-6 30.22256 12-13 AACGCAG 670 0.0 29.771479 6 >>END_MODULE