##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224542_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 227741 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.088539173886126 34.0 31.0 34.0 30.0 34.0 2 32.252176814890596 34.0 31.0 34.0 31.0 34.0 3 32.403893018824014 34.0 31.0 34.0 31.0 34.0 4 35.691026209597744 37.0 35.0 37.0 35.0 37.0 5 35.701160528846366 37.0 37.0 37.0 35.0 37.0 6 35.8110660794499 37.0 37.0 37.0 35.0 37.0 7 35.76576461857988 37.0 37.0 37.0 35.0 37.0 8 35.802538848955614 37.0 37.0 37.0 35.0 37.0 9 37.508893875059826 39.0 38.0 39.0 35.0 39.0 10-11 37.58931856802245 39.0 38.5 39.0 35.0 39.0 12-13 37.58479808203178 39.0 38.5 39.0 35.0 39.0 14-15 39.05601977685177 41.0 40.0 41.0 36.0 41.0 16-17 38.88919649953236 41.0 39.5 41.0 35.5 41.0 18-19 38.984820475891475 41.0 39.5 41.0 36.0 41.0 20-21 39.04868249458815 41.0 40.0 41.0 36.0 41.0 22-23 39.00683451815878 41.0 39.5 41.0 36.0 41.0 24-25 38.945611462143404 41.0 39.0 41.0 35.5 41.0 26-27 38.7706473581832 41.0 39.0 41.0 35.0 41.0 28-29 38.68836529215205 41.0 39.0 41.0 35.0 41.0 30-31 38.60039255118753 41.0 39.0 41.0 35.0 41.0 32-33 38.38202387800177 40.0 38.5 41.0 34.0 41.0 34-35 38.38668706996105 40.0 38.0 41.0 34.0 41.0 36-37 38.37235280428206 40.0 38.0 41.0 34.0 41.0 38-39 38.24081741978827 40.0 38.0 41.0 34.0 41.0 40-41 38.140490732893944 40.0 38.0 41.0 33.5 41.0 42-43 37.9878260831383 40.0 38.0 41.0 33.0 41.0 44-45 37.78905642813547 40.0 37.5 41.0 33.0 41.0 46-47 37.574597898489955 40.0 37.0 41.0 32.5 41.0 48-49 37.33779161415819 40.0 36.5 41.0 32.0 41.0 50-51 36.064828028330425 38.5 35.0 40.0 29.5 40.5 52-53 36.411840643538056 39.0 35.0 40.0 30.5 40.5 54-55 36.85958610878147 39.0 35.0 41.0 31.0 41.0 56-57 36.70962189504745 39.0 35.0 41.0 31.0 41.0 58-59 36.54494140273381 39.0 35.0 41.0 31.0 41.0 60-61 36.30299111710232 38.5 35.0 41.0 31.0 41.0 62-63 36.01749794722953 37.5 35.0 41.0 30.0 41.0 64-65 35.77879257577687 37.0 35.0 40.0 30.0 41.0 66-67 35.52729416310633 36.5 35.0 40.0 29.5 41.0 68-69 35.232483391220725 36.0 35.0 40.0 29.0 41.0 70-71 34.924837864064884 35.5 35.0 39.0 29.0 41.0 72-73 34.625666875968754 35.0 34.0 39.0 29.0 41.0 74-75 34.34384673818066 35.0 34.0 38.5 28.5 40.5 76-77 34.02736441835243 35.0 34.0 37.0 28.0 39.5 78-79 33.78192991161012 35.0 34.0 37.0 28.0 39.0 80-81 33.48079616757633 35.0 34.0 36.5 27.0 39.0 82-83 33.21622149722711 35.0 34.0 36.0 27.0 37.5 84-85 32.98968345620683 35.0 34.0 36.0 27.0 37.0 86-87 32.767997418119705 35.0 33.0 35.0 26.0 37.0 88-89 32.60844555877071 35.0 33.0 35.0 26.0 36.0 90-91 32.424890555499445 35.0 33.0 35.0 25.5 36.0 92-93 32.284123192574015 35.0 33.0 35.0 25.0 36.0 94-95 32.144925595303434 35.0 33.0 35.0 25.0 35.5 96-97 32.01232760021252 35.0 33.0 35.0 25.0 35.0 98-99 31.949504041872125 35.0 33.0 35.0 25.0 35.0 100-101 30.742617710469347 34.0 31.0 35.0 21.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 84.0 8 232.0 9 156.0 10 137.0 11 275.0 12 464.0 13 510.0 14 518.0 15 541.0 16 560.0 17 593.0 18 729.0 19 748.0 20 988.0 21 1315.0 22 1485.0 23 1429.0 24 1289.0 25 1259.0 26 1372.0 27 1419.0 28 1646.0 29 1925.0 30 2379.0 31 2933.0 32 3895.0 33 5399.0 34 8573.0 35 15847.0 36 33560.0 37 54023.0 38 61119.0 39 20334.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.27283521702801 18.926953691894983 12.723954439509214 24.07625665156779 2 16.075717591474525 19.141041797480472 39.31044475961728 25.47279585142772 3 20.597520868003567 24.928317694222823 27.929533988170775 26.544627449602835 4 12.948041854562858 15.786792891925478 38.070439666111945 33.194725587399724 5 13.518865729051862 38.840612801384026 33.931527480778605 13.708993988785506 6 30.800778076850456 36.78213409091907 18.11355882340027 14.303529008830207 7 27.704717200679717 31.091459157551782 21.783517241076485 19.420306400692013 8 26.484032299849392 34.907197210866734 19.971370987217938 18.637399502065943 9 26.496766063203374 15.560658818570216 19.94985531810258 37.99271980012382 10-11 26.458784320785455 25.184749342454804 26.979551332434653 21.376915004325088 12-13 26.54418835431477 22.587500713529842 27.752798134723218 23.11551279743217 14-15 23.475795239653593 24.814464213941044 24.678510793910867 27.03122975249449 16-17 23.280074527174296 27.657667158827255 26.11549075441187 22.946767559586583 18-19 23.261329796111983 26.74481934696101 26.902500944332687 23.09134991259432 20-21 24.337609794347692 25.34138107506759 27.00342424382197 23.317584886762738 22-23 24.078386572345007 26.039149347510875 26.385386001142408 23.497078079001714 24-25 23.264674235270867 26.143086145940842 26.735764948725265 23.856474670063026 26-27 23.274465291712954 26.958694306251402 26.98877233348409 22.77806806855156 28-29 23.0900452707242 27.041902863340372 26.9997497156858 22.868302150249626 30-31 23.032743335631263 26.102458494517894 27.31238556079055 23.55241260906029 32-33 23.106291796382735 26.341545878871177 27.149481208917148 23.402681115828948 34-35 23.76493472848543 25.96436302642036 26.723558779490737 23.54714346560347 36-37 23.241269206866487 25.76229052794315 27.42818493052917 23.56825533466119 38-39 23.2696973356314 26.190073662601137 26.708236818126927 23.831992183640534 40-41 23.73196559878274 25.87073415464739 27.23598031832324 23.16131992824663 42-43 23.5712184218962 26.205050740134105 27.047938558549856 23.175792279419838 44-45 23.621647852407794 25.857620598264887 26.790831260141807 23.729900289185515 46-47 23.676237480295597 25.91320842536039 26.48776460979797 23.92278948454604 48-49 23.31991165402804 26.143952999240366 26.695895776342425 23.840239570389173 50-51 23.27775850637347 26.425632626536284 26.40828836265758 23.888320504432667 52-53 23.62332649808335 26.45263698675249 25.886204065144174 24.037832450019977 54-55 23.668772860398434 25.856565133199556 26.197522624384717 24.27713938201729 56-57 23.69539014799739 26.258394971469723 26.01557474406177 24.030640136471114 58-59 23.772214329161844 26.40027404900822 26.462418175070763 23.36509344675917 60-61 23.67666919200237 26.61725792461324 26.094184042074286 23.6118888413101 62-63 23.49958272938903 26.170334255721002 26.6969736899899 23.633109324900076 64-65 24.341410160943475 25.539205672450265 26.013886783832284 24.105497382773976 66-67 23.309690594874724 26.046465666791104 25.830167548694526 24.81367618963965 68-69 23.45778757448154 26.216184174127626 26.872412082145946 23.45361616924489 70-71 24.015219042684453 25.643384370842316 26.453954272616702 23.88744231385653 72-73 23.47601002893638 26.27590113330494 26.624323244387266 23.623765593371417 74-75 23.567561396498654 25.986317790823787 26.556702570024722 23.889418242652837 76-77 23.732002581880295 25.494970163475177 26.378868978356994 24.394158276287538 78-79 23.540946600555998 25.010869612953947 26.782506730376504 24.66567705611355 80-81 23.536919710723105 26.123012978796318 26.009876890361245 24.33019042011933 82-83 23.321068875001373 26.36250810003405 26.25948665004558 24.056936374919 84-85 23.40116662127854 25.730016778965677 26.855349503219628 24.013467096536154 86-87 23.054380253162332 26.93551434308285 26.131915061884612 23.878190341870205 88-89 23.531698446374214 25.916823698393664 25.937468428936008 24.614009426296114 90-91 23.211674665519162 25.65282491953579 26.34659547468396 24.788904940261087 92-93 23.208098957990277 25.996012874726105 26.64260339959514 24.153284767688476 94-95 23.511576747269924 25.76391602741711 26.50379158781247 24.220715637500494 96-97 23.74385815465814 26.073478205505378 26.54835975955142 23.63430388028506 98-99 22.75526535917291 26.36269229840365 26.583340102793336 24.298702239630103 100-101 23.42718322914516 25.704533174012557 26.2027034744523 24.665580122389986 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1.0 1 1.0 2 1.0 3 2.0 4 3.0 5 2.5 6 6.0 7 6.5 8 7.0 9 15.5 10 18.0 11 15.5 12 17.5 13 21.0 14 24.5 15 25.5 16 34.0 17 38.0 18 39.5 19 43.0 20 42.0 21 56.0 22 73.5 23 90.5 24 113.5 25 149.0 26 205.0 27 277.5 28 367.0 29 501.0 30 678.0 31 1024.0 32 1702.5 33 2617.0 34 3812.0 35 5239.5 36 6910.0 37 8311.0 38 8836.0 39 8816.5 40 8290.5 41 7511.0 42 6897.0 43 6462.0 44 6177.0 45 6240.0 46 6647.0 47 6877.5 48 7244.0 49 7956.0 50 8742.5 51 8923.0 52 8844.0 53 9402.5 54 10023.5 55 9968.5 56 8641.0 57 7413.0 58 6951.5 59 6505.5 60 5515.5 61 4253.0 62 3499.0 63 2581.0 64 1598.0 65 1041.0 66 805.5 67 705.0 68 570.0 69 403.0 70 248.5 71 156.0 72 121.0 73 94.5 74 71.5 75 64.0 76 46.5 77 27.0 78 19.5 79 11.5 80 9.0 81 7.5 82 4.5 83 3.5 84 2.5 85 2.5 86 2.0 87 2.0 88 1.5 89 0.0 90 2.0 91 3.0 92 2.0 93 1.0 94 1.0 95 2.5 96 2.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.15412244611203077 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0392990282821275 16-17 0.07596348483584422 18-19 0.029419384300587072 20-21 0.04368998116281214 22-23 0.06630338849833803 24-25 0.02019838325114933 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.024369788487799738 38-39 0.005927786388924261 40-41 0.007245072253129651 42-43 0.0052691434568215645 44-45 0.01427059686222507 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 2.1954764403423187E-4 58-59 0.019539740319046636 60-61 0.02129612147132049 62-63 0.031175765452860927 64-65 0.050276410483839094 66-67 0.02019838325114933 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.018442002098875476 80-81 0.061034245041516465 82-83 0.052032791636112956 84-85 0.03293214660513478 86-87 0.06147334032958492 88-89 0.0351276230454771 90-91 0.0 92-93 0.00351276230454771 94-95 0.0 96-97 0.0 98-99 0.0010977382201711593 100-101 0.04742229111139409 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 227741.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.43683614011526 #Duplication Level Percentage of deduplicated Percentage of total 1 74.72280147003781 39.92950098084775 2 15.163328817617536 16.205606347314323 3 4.3914651747057105 7.039980148673151 4 1.817778283255621 3.885452810455626 5 0.9650732299671428 2.5785230026482995 6 0.5801722707494559 1.8601542339046355 7 0.39596925523366494 1.4811540945911381 8 0.2652203281371739 1.133802817255501 9 0.22885587786875342 1.1006400640837328 >10 1.2512927060846688 12.583119643633008 >50 0.14830824566537032 5.389083926856881 >100 0.06776999305238778 6.141183388016397 >500 0.001964347624706892 0.6717985417195956 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 703 0.30868398751213 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 577 0.25335798121550357 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 412 0.18090725868420704 No Hit GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 392 0.1721253529228378 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 374 0.16422163773760545 No Hit ATACAAAACCGTGCGCGGCTTAACCCGCGGTCTAATGTTATTAAATATGT 345 0.15148787438362 No Hit GGTCAGCACCGTCAATGCAGCGCCTTTATTGCAGCCCACCGGCAGCACTT 310 0.13611953930122375 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 285 0.12514215709951215 No Hit CGCCTAATGCTTCGTATAGCTGGATCTGCAAGCGTGTAAGATCGTCGTGA 281 0.1233857759472383 No Hit GTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCC 264 0.11592115605007441 No Hit GTGTAAGATCGTCGTGATCGCCACAGAAGCAGATCTTGGTGACGCTGCCG 263 0.11548206076200597 No Hit TAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCATCGCA 242 0.10626105971256823 No Hit CCTTTATTGCAGCCCACCGGCAGCACTTCGAGGCAATCCGTGGCGGAAAA 241 0.10582196442449976 No Hit GACTAACATTTCGCGATCGTTCATCGCATCACCAAAGGCCGTGCAATCGC 229 0.10055282096767819 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 0.0 0.0 20-21 0.0 0.0 0.0 2.1954764403423187E-4 0.0 22-23 0.0 0.0 0.0 4.3909528806846375E-4 0.0 24-25 0.0 0.0 0.0 8.781905761369275E-4 0.0 26-27 0.0 0.0 0.0 0.0013172858642053911 0.0 28-29 0.0 0.0 0.0 0.0021954764403423186 0.0 30-31 0.0 0.0 0.0 0.004390952880684637 0.0 32-33 0.0 0.0 0.0 0.012514215709951216 0.0 34-35 0.0 0.0 0.0 0.023052502623594345 0.0 36-37 0.0 0.0 0.0 0.03907948063809327 0.0 38-39 0.0 0.0 0.0 0.0627906261937903 0.0 40-41 0.0 0.0 0.0 0.09484458222278816 0.0 42-43 0.0 0.0 0.0 0.12821582411599142 0.0 44-45 0.0 0.0 0.0 0.16553892360181083 0.0 46-47 0.0 0.0 0.0 0.20681388068024642 0.0 48-49 0.0 0.0 0.0 0.2590662199603936 0.0 50-51 0.0 0.0 0.0 0.31153810688457506 0.0 52-53 0.0 0.0 0.0 0.36752275611330415 0.0 54-55 0.0 0.0 0.0 0.4228487624099306 0.0 56-57 0.0 0.0 0.0 0.5007881760420829 0.0 58-59 0.0 0.0 0.0 0.5802644231824748 0.0 60-61 0.0 0.0 0.0 0.6672052902200307 0.0 62-63 0.0 0.0 0.0 0.7510724902411072 0.0 64-65 0.0 0.0 0.0 0.8448193342437242 0.0 66-67 0.0 0.0 0.0 0.9574472756332852 0.0 68-69 0.0 0.0 0.0 1.0876390285455848 0.0 70-71 0.0 0.0 0.0 1.2151962097294735 0.0 72-73 0.0 0.0 0.0 1.3484616296582521 0.0 74-75 0.0 0.0 0.0 1.5069750286509676 0.0 76-77 0.0 0.0 0.0 1.668342547016128 0.0 78-79 0.0 0.0 0.0 1.867252712511142 0.0 80-81 0.0 0.0 0.0 2.070334283242807 0.0 82-83 0.0 0.0 0.0 2.2795631880074296 0.0 84-85 0.0 0.0 0.0 2.496695807957285 0.0 86-87 0.0 0.0 0.0 2.7267817389051596 0.0 88-89 0.0 0.0 0.0 2.9900193641022037 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAACCGT 90 0.0 58.033413 6 GTATCAA 370 0.0 48.80805 1 CCGTGCG 100 1.2732926E-11 47.52363 9 AACCGTG 120 1.8189894E-12 43.525063 7 ACCGTGC 120 1.8189894E-12 43.525063 8 GGTATCA 190 0.0 40.019894 1 ATCAACG 470 0.0 38.38961 3 TCAACGC 470 0.0 37.379356 4 ATCTTAT 65 1.3209681E-4 36.556633 1 GTATTAA 125 5.5824785E-9 34.21701 1 GTACATG 945 0.0 34.196896 1 CGGAAAC 35 2.0454063E-4 33.945446 20-21 AATGCCG 70 2.0422031E-4 33.945446 9 TCTACAC 100 1.2969958E-6 33.23732 3 CAGGAGT 100 1.2969958E-6 33.23732 4 ACATGGG 950 0.0 31.987797 3 AGACGAG 30 0.003951598 31.661543 52-53 TACATGG 1005 0.0 31.65459 2 CACCGTA 60 0.003951731 31.65459 7 ACCGCAA 210 0.0 31.654589 8 >>END_MODULE