##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224542_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 227741 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.141090097962156 34.0 33.0 34.0 31.0 34.0 2 33.268054500507155 34.0 33.0 34.0 31.0 34.0 3 33.38820414418133 34.0 34.0 34.0 31.0 34.0 4 36.60793620823655 37.0 37.0 37.0 35.0 37.0 5 36.641970484014735 37.0 37.0 37.0 35.0 37.0 6 36.68255606149091 37.0 37.0 37.0 36.0 37.0 7 36.66463658278483 37.0 37.0 37.0 35.0 37.0 8 36.64929020246684 37.0 37.0 37.0 35.0 37.0 9 38.49004351434305 39.0 39.0 39.0 37.0 39.0 10-11 38.51517293767921 39.0 39.0 39.0 37.5 39.0 12-13 38.502546752670796 39.0 39.0 39.0 37.0 39.0 14-15 40.08959300257749 41.0 40.0 41.0 38.0 41.0 16-17 40.10156054465379 41.0 40.0 41.0 38.0 41.0 18-19 40.09599940283041 41.0 40.0 41.0 38.0 41.0 20-21 40.097413289657986 41.0 40.0 41.0 38.0 41.0 22-23 40.02249924256063 41.0 40.0 41.0 38.0 41.0 24-25 39.9878260831383 41.0 40.0 41.0 38.0 41.0 26-27 39.9198212003987 41.0 40.0 41.0 38.0 41.0 28-29 39.883529974839846 41.0 40.0 41.0 38.0 41.0 30-31 39.81216162219363 41.0 40.0 41.0 37.5 41.0 32-33 39.74636099780013 41.0 40.0 41.0 37.0 41.0 34-35 39.657705463662666 41.0 40.0 41.0 37.0 41.0 36-37 39.545940344514165 41.0 40.0 41.0 36.5 41.0 38-39 39.42757342770955 41.0 39.5 41.0 36.0 41.0 40-41 39.28374337514984 41.0 39.0 41.0 35.5 41.0 42-43 39.17845930245322 41.0 39.0 41.0 35.0 41.0 44-45 38.91547196157038 41.0 38.5 41.0 35.0 41.0 46-47 38.64164555350156 40.0 38.0 41.0 35.0 41.0 48-49 38.52100631858119 40.0 38.0 41.0 35.0 41.0 50-51 38.35791754668681 40.0 37.5 41.0 35.0 41.0 52-53 38.102309202119955 40.0 37.0 41.0 34.5 41.0 54-55 37.9024549817556 40.0 36.0 41.0 34.0 41.0 56-57 37.68110924251672 39.5 35.5 41.0 34.0 41.0 58-59 37.41913182079643 39.0 35.0 41.0 34.0 41.0 60-61 37.16865430467065 39.0 35.0 41.0 33.0 41.0 62-63 36.956935729622685 38.5 35.0 41.0 33.0 41.0 64-65 36.693221686038086 37.5 35.0 41.0 33.0 41.0 66-67 36.41372216684743 37.0 35.0 40.0 33.0 41.0 68-69 36.15724660908664 36.5 35.0 40.0 33.0 41.0 70-71 35.84846162965825 36.0 35.0 39.0 32.0 41.0 72-73 35.56163580558617 35.5 35.0 39.0 32.0 41.0 74-75 35.26116509543736 35.0 35.0 39.0 32.0 40.5 76-77 33.43728402000518 34.5 32.0 36.5 28.5 39.0 78-79 34.73453835716889 35.0 34.5 37.0 31.5 39.0 80-81 34.65176011346222 35.0 35.0 37.0 32.0 39.0 82-83 34.450961838228515 35.0 35.0 36.0 32.0 38.0 84-85 34.234597635032785 35.0 35.0 36.0 32.0 37.0 86-87 34.030172432719624 35.0 35.0 36.0 31.5 37.0 88-89 33.87858356641975 35.0 34.5 35.0 31.0 36.5 90-91 33.734793032435974 35.0 34.0 35.0 31.0 36.0 92-93 33.634284120997094 35.0 34.0 35.0 31.0 36.0 94-95 33.524174391084614 35.0 34.0 35.0 31.0 36.0 96-97 33.46661558524815 35.0 34.0 35.0 31.0 36.0 98-99 33.421707114660954 35.0 34.0 35.0 31.0 35.0 100-101 32.58314708374864 34.5 33.0 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 3.0 14 5.0 15 11.0 16 30.0 17 78.0 18 160.0 19 253.0 20 343.0 21 613.0 22 909.0 23 827.0 24 651.0 25 697.0 26 841.0 27 1091.0 28 1334.0 29 1525.0 30 1811.0 31 2009.0 32 2467.0 33 3296.0 34 5527.0 35 11320.0 36 30635.0 37 61258.0 38 72674.0 39 27367.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.669296062964335 19.146063846683255 13.052129105122912 23.132510985229498 2 15.929498860547728 19.456312214313627 39.78247219429088 24.83171673084776 3 20.285763213474954 26.011126674599655 28.275101979880652 25.42800813204473 4 12.943650901682174 16.059031970527922 38.763332030683976 32.23398509710592 5 13.37615976042961 38.205681014837026 34.860214015043404 13.557945209689956 6 30.597476958474758 36.69036317571276 18.664184314638117 14.04797555117436 7 27.48209588962901 31.109901159650654 22.314383444351257 19.093619506369077 8 26.181934741658285 35.05605051352194 19.879600072011627 18.882414672808146 9 26.468224869478924 15.746396125423178 20.239658208227766 37.54572079687013 10-11 26.443855080991124 25.030626896342778 27.434234503229543 21.09128351943655 12-13 26.554946188872446 23.046135741917354 27.772996517974363 22.625921551235834 14-15 23.53572698811369 25.14523076652864 24.97069038952143 26.34835185583623 16-17 23.02879147803865 28.052480668829944 26.209817292450634 22.708910560680774 18-19 22.933288252883756 26.857043747063553 27.673980530514925 22.535687469537766 20-21 23.893360381840616 25.61221398179495 27.587501481959613 22.906924154404823 22-23 24.092703425442505 26.198641415316793 26.801968937853754 22.906686221386952 24-25 23.510479009049753 25.960411168827747 26.993602381652842 23.535507440469654 26-27 23.439705801635654 26.849991766836816 27.05658927493276 22.653713156594762 28-29 23.24022051994757 26.824218552744533 27.40537775348048 22.530183173827417 30-31 23.22221295243281 25.83395172586403 27.600651617407497 23.34318370429567 32-33 23.11243913041569 26.30927237519814 27.86981702899346 22.708471465392705 34-35 23.846712876460888 25.949646400663944 27.071591515372408 23.13204920750276 36-37 23.087681242150932 25.789956703873816 27.60896484495069 23.513397209024564 38-39 23.311349295910706 26.18303247987846 26.978014498926413 23.527603725284425 40-41 23.268757052968063 26.21464734061939 27.46606891161451 23.050526694798037 42-43 23.331986774449923 26.195546695588412 27.582429162952653 22.890037367009015 44-45 23.61326105142511 25.86559341646192 27.207375740768796 23.313769791344175 46-47 23.541484015706335 25.68121941626401 26.915006053574686 23.86229051445497 48-49 23.203265134067653 25.989343087167576 27.112995330190852 23.69439644857392 50-51 23.616300973474253 26.132975617038657 26.82103793344194 23.429685476045155 52-53 23.681287076108386 26.395554599303594 26.329690306093323 23.593468018494693 54-55 23.83562906986445 25.80453234156344 26.618175910354307 23.7416626782178 56-57 23.906341943246588 26.08707107789322 26.230228085121333 23.77635889373886 58-59 24.194908739484724 26.073711260954557 26.51387028048057 23.217509719080144 60-61 23.72214681969719 26.539199796193564 26.448497147149126 23.290156236960122 62-63 23.564926824770243 26.197303076740685 26.819501099933696 23.418268998555376 64-65 23.874269455214474 25.76984381380603 26.329690306093323 24.026196424886166 66-67 23.485670125273884 26.15097852384946 26.04515655942496 24.318194791451692 68-69 23.814552496037162 25.985878695535717 26.72531516064301 23.474253647784103 70-71 24.108087696110932 25.84953960859046 26.409166553233714 23.63320614206489 72-73 23.50520986559293 26.244066724919975 26.595342955374747 23.655380454112347 74-75 23.705656864596186 25.671486469278697 26.63178786428443 23.991068801840687 76-77 23.92240291032996 25.481414153389494 26.493750562592073 24.102432373688472 78-79 23.75763271203076 25.238175746144947 26.481366411895284 24.522825129929014 80-81 23.25968439935097 26.1375038698076 26.49670984017969 24.106101890661744 82-83 23.193267717140493 26.134579792173916 26.7750073000393 23.89714519064629 84-85 23.584880805490542 25.741974294910356 26.976073277508704 23.697071622090395 86-87 23.062382267575888 26.642984794130175 26.594245217154576 23.700387721139364 88-89 23.67931114731208 25.82055931957794 25.957117954167234 24.543011578942746 90-91 23.44812747814403 25.877861254670876 26.242529891411735 24.431481375773355 92-93 23.6191550928467 26.056353489270705 26.695895776342425 23.62859564154017 94-95 23.613885949389875 25.536464668197645 26.40565379092917 24.443995591483308 96-97 23.845289166201958 26.074795491369585 26.499839730219854 23.580075612208606 98-99 22.32689766006121 26.66713503497394 26.8291611962712 24.176806108693647 100-101 23.259017430696833 26.057507678382336 26.331688541085384 24.351786349835447 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2.0 1 1.5 2 2.0 3 3.0 4 3.5 5 2.5 6 2.5 7 7.5 8 16.5 9 19.5 10 17.5 11 16.5 12 17.0 13 28.0 14 35.5 15 31.0 16 34.0 17 39.5 18 46.0 19 46.0 20 54.5 21 65.5 22 72.5 23 102.5 24 130.0 25 170.0 26 235.5 27 304.5 28 389.5 29 508.0 30 706.5 31 1156.5 32 1953.5 33 3066.5 34 4325.0 35 5777.0 36 7534.0 37 8656.5 38 8862.5 39 8763.5 40 7977.0 41 7111.0 42 6718.0 43 6317.0 44 6030.0 45 6154.5 46 6548.0 47 6862.0 48 7171.5 49 8061.0 50 9121.5 51 9012.5 52 8507.5 53 9116.5 54 10016.0 55 9843.5 56 8391.0 57 7321.5 58 7022.5 59 6622.5 60 5520.5 61 4103.5 62 3357.0 63 2458.5 64 1483.5 65 915.0 66 703.5 67 632.5 68 478.5 69 299.0 70 185.0 71 133.5 72 91.5 73 66.0 74 56.0 75 43.5 76 36.5 77 21.5 78 10.0 79 5.5 80 3.0 81 2.0 82 2.5 83 2.0 84 1.0 85 0.5 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.47114924409746156 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 8.781905761369275E-4 22-23 0.001756381152273855 24-25 0.0 26-27 0.001536833508239623 28-29 0.0028541193724450145 30-31 0.0 32-33 0.0 34-35 0.005049595812787333 36-37 0.003073667016479246 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.00944054869347197 46-47 0.08320855708897387 48-49 6.586429321026956E-4 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.00834281047330081 58-59 0.042153147654572516 60-61 0.03249305131706631 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 2.1954764403423187E-4 78-79 0.009001453405403507 80-81 0.007245072253129651 82-83 0.0010977382201711593 84-85 0.001756381152273855 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06762067436254342 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 227741.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.969675886147485 #Duplication Level Percentage of deduplicated Percentage of total 1 73.48508123969879 38.18995854494363 2 15.763626594557104 16.38461129818775 3 4.665028775036543 7.273201003146022 4 1.9262553313526363 4.004274609774406 5 1.04299313086291 2.7102007481211814 6 0.6294554628925771 1.9627557834775304 7 0.4627425218215182 1.6834005214461982 8 0.3051662093549504 1.26875111932648 9 0.1830912719253583 0.8563674653589028 >10 1.2983486545033114 12.794620239463656 >50 0.1663538287232981 5.944320710105888 >100 0.07087263708921576 6.659992368749446 >500 9.843421817946633E-4 0.2675455878989139 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 523 0.2296468356598065 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 385 0.16905168590635855 No Hit ATACAAAACCGTGCGCGGCTTAACCCGCGGTCTAATGTTATTAAATATGT 363 0.15939158956885233 No Hit GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 359 0.1576352084165785 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 352 0.15456154140009923 No Hit GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 326 0.14314506391031917 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 317 0.13919320631770302 No Hit GAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCAT 308 0.13524134872508684 No Hit ACTTAATACTTCAGTACTTCTAGCATCAGGTGTTTCAATTACATGAGCTC 291 0.12777672882792296 No Hit CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG 286 0.12558125238758064 No Hit TCATTTAGGTGAGAAAACCCTCTCTACTTTGGCGCGACTGCGTGAACGCG 269 0.11811663249041673 No Hit ACATTACCCTCACTTTTGCCACGGGGCGTCATGCGCTGGAGATGCAGCAT 250 0.10977382201711593 No Hit GCATATTCTCGGGGCGCTATCGCTGGATGCGTATTTGATTACCGGCAACG 250 0.10977382201711593 No Hit GGTCAGGCCCGAGGCGGTTTTCAGAAGCGGCAAACGTCGCCCGACCATTG 249 0.10933472672904747 No Hit GTATCAGCAATGGGATACCCGAGCCAGCATGCATATCTTCAATGACGACG 248 0.10889563144097902 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 241 0.10582196442449976 No Hit ATATACACCAGATTCAGACAGCCAATCACCCGTTGTTCACTGCGCAGCGG 240 0.1053828691364313 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 229 0.10055282096767819 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 4.3909528806846375E-4 0.0 3 0.0 0.0 0.0 4.3909528806846375E-4 0.0 4 0.0 0.0 0.0 4.3909528806846375E-4 0.0 5 0.0 0.0 0.0 4.3909528806846375E-4 0.0 6 0.0 0.0 0.0 4.3909528806846375E-4 0.0 7 0.0 0.0 0.0 4.3909528806846375E-4 0.0 8 0.0 0.0 0.0 4.3909528806846375E-4 0.0 9 0.0 0.0 0.0 4.3909528806846375E-4 0.0 10-11 0.0 0.0 0.0 8.781905761369275E-4 0.0 12-13 0.0 0.0 0.0 8.781905761369275E-4 0.0 14-15 0.0 0.0 0.0 8.781905761369275E-4 0.0 16-17 0.0 0.0 0.0 8.781905761369275E-4 0.0 18-19 0.0 0.0 0.0 8.781905761369275E-4 0.0 20-21 0.0 0.0 0.0 0.0010977382201711593 0.0 22-23 0.0 0.0 0.0 0.0013172858642053911 0.0 24-25 0.0 0.0 0.0 0.001756381152273855 0.0 26-27 0.0 0.0 0.0 0.0021954764403423186 0.0 28-29 0.0 0.0 0.0 0.0030736670164792463 0.0 30-31 0.0 0.0 0.0 0.005269143456821565 0.0 32-33 0.0 0.0 0.0 0.013392406286088144 0.0 34-35 0.0 0.0 0.0 0.023930693199731276 0.0 36-37 0.0 0.0 0.0 0.039738123570195974 0.0 38-39 0.0 0.0 0.0 0.06344926912589302 0.0 40-41 0.0 0.0 0.0 0.0957227727989251 0.0 42-43 0.0 0.0 0.0 0.12909401469212833 0.0 44-45 0.0 0.0 0.0 0.1686125906182901 0.0 46-47 0.0 0.0 0.0 0.21098528591689683 0.0 48-49 0.0 0.0 0.0 0.2638962681291467 0.0 50-51 0.0 0.0 0.0 0.3172463456294651 0.0 52-53 0.0 0.0 0.0 0.3747678283664338 0.0 54-55 0.0 0.0 0.0 0.4309720252391972 0.0 56-57 0.0 0.0 0.0 0.5091309865153837 0.0 58-59 0.0 0.0 0.0 0.5894854242319125 0.0 60-61 0.0 0.0 0.0 0.6762067436254342 0.0 62-63 0.0 0.0 0.0 0.7607325865786134 0.0 64-65 0.0 0.0 0.0 0.8549185258692988 0.0 66-67 0.0 0.0 0.0 0.9684246578349968 0.0 68-69 0.0 0.0 0.0 1.0981773154592278 0.0 70-71 0.0 0.0 0.0 1.2279299730834587 0.0 72-73 0.0 0.0 0.0 1.3603172024361005 0.0 74-75 0.0 0.0 0.0 1.5194892443609187 0.0 76-77 0.0 0.0 0.0 1.6810763103701134 0.0 78-79 0.0 0.0 0.0 1.8841578811017778 0.0 80-81 0.0 0.0 0.0 2.088556737697648 0.0 82-83 0.0 0.0 0.0 2.3002006665466475 0.0 84-85 0.0 0.0 0.0 2.5201874058689477 0.0 86-87 0.0 0.0 0.0 2.753566551477336 0.0 88-89 0.0 0.0 0.0 3.0218537724871672 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGATTG 25 0.0050199763 56.988934 9 TGTACGC 25 0.0050199763 56.988934 2 GTACGCT 25 0.0050199763 56.988934 3 GGTATCA 280 0.0 54.514584 1 GTACTAG 45 9.411797E-4 42.400234 1 CTACACT 80 2.255365E-7 41.554432 4 GTATCAA 460 0.0 38.367603 1 AAACCGT 75 6.9070775E-6 37.992622 6 ACCGTGC 90 5.6798854E-7 36.93727 8 GTCTAAT 130 1.9463187E-10 36.692513 1 CCGTGCG 80 1.0752503E-5 35.618084 9 AACCGTG 95 8.672414E-7 34.993206 7 TATACCG 55 0.0025777551 34.538746 5 ATAATAC 85 1.628647E-5 33.522903 3 GTACATG 970 0.0 32.455853 1 TCGACGC 30 0.003935256 31.688353 58-59 TTCGGCG 30 0.003952224 31.660519 32-33 CCGCATT 30 0.003952224 31.660519 66-67 GTTATTA 170 1.07320375E-10 30.729328 8 GTATAGT 95 3.380142E-5 30.126482 1 >>END_MODULE