##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224541_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1038597 Sequences flagged as poor quality 0 Sequence length 101 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.19090369026677 34.0 33.0 34.0 31.0 34.0 2 33.32133156556393 34.0 33.0 34.0 31.0 34.0 3 33.45203673802254 34.0 34.0 34.0 31.0 34.0 4 36.65624010082833 37.0 37.0 37.0 35.0 37.0 5 36.69847496189571 37.0 37.0 37.0 35.0 37.0 6 36.73908647916372 37.0 37.0 37.0 37.0 37.0 7 36.71741686140052 37.0 37.0 37.0 36.0 37.0 8 36.708297828705454 37.0 37.0 37.0 36.0 37.0 9 38.575361762069406 39.0 39.0 39.0 38.0 39.0 10-11 38.603213277142146 39.0 39.0 39.0 37.5 39.0 12-13 38.6140235336709 39.0 39.0 39.0 38.0 39.0 14-15 40.25990494869521 41.0 40.0 41.0 39.0 41.0 16-17 40.27560304911337 41.0 40.0 41.0 39.0 41.0 18-19 40.28977408946877 41.0 40.0 41.0 39.0 41.0 20-21 40.306266530714026 41.0 40.0 41.0 39.0 41.0 22-23 40.241053074484135 41.0 40.0 41.0 39.0 41.0 24-25 40.23028181286871 41.0 40.0 41.0 39.0 41.0 26-27 40.206323530686106 41.0 40.0 41.0 39.0 41.0 28-29 40.18627051686073 41.0 40.0 41.0 39.0 41.0 30-31 40.13555450285337 41.0 40.0 41.0 38.5 41.0 32-33 40.10971002227043 41.0 40.0 41.0 38.0 41.0 34-35 40.06434305125087 41.0 40.0 41.0 38.0 41.0 36-37 40.010911354452205 41.0 40.0 41.0 38.0 41.0 38-39 39.958586439205966 41.0 40.0 41.0 38.0 41.0 40-41 39.886314422244624 41.0 40.0 41.0 38.0 41.0 42-43 39.86146744117305 41.0 40.0 41.0 38.0 41.0 44-45 39.728983908099096 41.0 40.0 41.0 37.5 41.0 46-47 39.603734172157246 41.0 40.0 41.0 37.0 41.0 48-49 39.59775495211328 41.0 40.0 41.0 37.0 41.0 50-51 39.56335951288132 41.0 40.0 41.0 37.0 41.0 52-53 39.45532338337199 41.0 39.5 41.0 36.0 41.0 54-55 39.37048633878203 41.0 39.0 41.0 36.0 41.0 56-57 39.26832351720638 41.0 39.0 41.0 35.5 41.0 58-59 39.12867936264018 41.0 39.0 41.0 35.0 41.0 60-61 39.00179376601319 41.0 39.0 41.0 35.0 41.0 62-63 38.8753948836748 40.0 38.0 41.0 35.0 41.0 64-65 38.71389191380295 40.0 38.0 41.0 35.0 41.0 66-67 38.51340221471851 40.0 37.0 41.0 35.0 41.0 68-69 38.332754186657574 40.0 37.0 41.0 35.0 41.0 70-71 38.078387478492616 39.5 36.5 41.0 35.0 41.0 72-73 37.810652736335655 39.0 36.0 41.0 34.5 41.0 74-75 37.48724577482893 39.0 35.5 40.5 34.0 41.0 76-77 35.430886089599724 36.0 34.0 38.5 31.5 39.5 78-79 36.653983691460695 37.0 35.0 39.0 34.0 40.5 80-81 36.43080665551701 37.0 35.0 39.0 34.0 39.5 82-83 36.05093024532134 36.5 35.0 38.5 34.0 39.0 84-85 35.664849792556694 36.0 35.0 37.0 34.0 39.0 86-87 35.29610041238324 36.0 35.0 37.0 34.0 38.0 88-89 34.998603885819044 35.0 35.0 36.5 34.0 37.0 90-91 34.76132031962349 35.0 35.0 36.0 33.5 37.0 92-93 34.57365802134996 35.0 35.0 36.0 33.0 36.5 94-95 34.39262533976124 35.0 35.0 36.0 33.0 36.0 96-97 34.28781230833519 35.0 35.0 35.0 33.0 36.0 98-99 34.20302484986958 35.0 35.0 35.0 33.0 36.0 100-101 33.49951087861798 35.0 34.0 35.0 31.0 35.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 2.0 13 4.0 14 12.0 15 33.0 16 81.0 17 149.0 18 271.0 19 426.0 20 652.0 21 826.0 22 1139.0 23 1236.0 24 1216.0 25 1522.0 26 1963.0 27 2624.0 28 3481.0 29 3982.0 30 4386.0 31 5281.0 32 6772.0 33 9311.0 34 14352.0 35 26003.0 36 61529.0 37 148072.0 38 434217.0 39 308995.0 40 59.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.65213331591654 24.50108129290701 15.223926810742295 21.622858580434162 2 12.370438196913721 23.226044365620158 44.61027713347911 19.793240303987012 3 15.548090356509793 31.686881437169568 32.401691897819845 20.363336308500795 4 10.136848074854827 19.83348690589324 45.25200823803651 24.77765678121543 5 10.168332856728837 41.532278641282424 38.273651859190814 10.025736642797927 6 23.669334689008345 44.3928684561962 21.095670409215508 10.842126445579952 7 21.601448877668624 34.65270937620655 28.317913492914 15.42792825321082 8 21.076991364311663 40.62952232675426 23.777942743913183 14.515543565020888 9 23.974168999140186 17.717940644927722 23.94730583662383 34.360584519308254 10-11 21.20591528764285 29.16058875579267 32.61471966508665 17.01877629147783 12-13 21.615650728819745 26.865280758561788 32.674223014316425 18.84484549830204 14-15 19.47343387281111 29.277525353914946 28.792110895756483 22.45692987751746 16-17 18.94931335253231 32.45840301868771 29.632716058297877 18.959567570482104 18-19 19.0988419954997 31.2274635878979 30.94212673443116 18.73156768217124 20-21 19.735948938317154 30.626562820447393 30.78889876341606 18.848589477819385 22-23 19.76437137697643 30.44179885391979 30.46505167856027 19.328778090543512 24-25 19.796840435493227 30.73500915903013 29.73904587217797 19.72910453329867 26-27 19.268207786930823 31.117056231455937 30.104994976282374 19.50974100533087 28-29 19.51704236350559 30.68612375416322 30.47371405957678 19.32311982275441 30-31 19.98153268152108 30.40849072999346 30.104473221666073 19.50550336681939 32-33 19.599401306861044 30.42989306231348 30.62977838821755 19.340927242607926 34-35 19.575236542713938 30.402833938902578 30.366533484761753 19.65539603362173 36-37 19.81429469632123 30.03424865272906 30.011862339095362 20.139594311854346 38-39 19.6181001870793 30.529358355550805 29.993635645009565 19.858905812360327 40-41 19.446811419636298 30.49363708926561 30.75259219889909 19.306959292198993 42-43 19.60736455044642 30.24455106263546 30.301358467239943 19.846725919678182 44-45 19.639271996156037 30.44546470860684 29.893279897853752 20.02198339738337 46-47 20.232437578532718 29.80600972842133 29.808611425884386 20.152941267161566 48-49 19.691755019668502 29.880669889306606 30.098224563217713 20.329350527807186 50-51 19.487539440225614 30.27983905210587 29.9190157491308 20.31360575853772 52-53 19.63567196901204 29.844636562593575 30.397931055067556 20.121760413326825 54-55 19.985278216671144 30.11139065489309 29.769775957373263 20.1335551710625 56-57 20.3994588504906 30.02782779505647 29.41908274195257 20.15363061250036 58-59 19.773133247253742 29.57093932544875 30.138660057706396 20.517267369591107 60-61 20.048271840190544 29.940579984426265 30.00660222395264 20.004545951430554 62-63 19.728008072428477 30.0924709006477 30.21913215616837 19.96038887075545 64-65 20.151175094863554 29.985981087948453 29.698188999197956 20.164654817990037 66-67 20.18357457223543 30.0930004611991 29.537106307836435 20.186318658729036 68-69 20.23123502186122 29.597861345642247 30.122896561418916 20.048007071077617 70-71 20.31793852668552 29.354648626945774 30.013566378489443 20.313846467879266 72-73 19.744857726336587 30.13676141949187 29.53739515904629 20.58098569512525 74-75 19.97122079112495 29.544375729951078 29.75774049029604 20.72666298862793 76-77 19.68656664683216 29.455590923883634 30.15673111918613 20.701111310098074 78-79 19.944748641464614 29.135655180681475 29.89028204865259 21.029314129201325 80-81 19.590387490160488 29.944465440749894 29.523683431347298 20.941463637742316 82-83 19.84133288464788 29.64674686197001 29.51762943877249 20.994290814609624 84-85 20.054709367318228 29.146218053706075 29.74304313875016 21.056029440225537 86-87 19.38042378323835 30.11967105624222 30.039899980454404 20.46000518006503 88-89 19.766569708943894 29.11586496013372 30.096514817585646 21.021050513336743 90-91 19.884421002564036 29.3379915405109 29.640852034042076 21.136735422882985 92-93 20.43107191721139 29.398554010843476 29.330770260264565 20.839603811680565 94-95 19.97945305060577 28.93672906815637 29.550874882172778 21.532942999065085 96-97 20.077469894482654 28.966577026507878 29.91940088407727 21.036552194932202 98-99 19.588155944991176 29.04615553482246 30.0539574060006 21.311731114185772 100-101 19.808545272621377 29.111890358904148 29.691476646733705 21.388087721740774 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1.0 1 0.5 2 0.5 3 2.5 4 2.5 5 1.0 6 3.5 7 7.5 8 11.5 9 16.0 10 16.5 11 13.5 12 18.5 13 27.0 14 29.5 15 27.5 16 31.5 17 41.0 18 51.5 19 59.0 20 71.5 21 84.0 22 87.0 23 116.5 24 165.0 25 261.5 26 475.0 27 991.5 28 2263.5 29 5254.0 30 10476.0 31 19094.0 32 31350.5 33 44612.0 34 56276.0 35 69584.0 36 86964.0 37 97872.5 38 93479.5 39 81321.5 40 67595.0 41 53417.0 42 42268.0 43 33999.5 44 27303.0 45 21618.5 46 16918.0 47 13828.5 48 12399.0 49 12623.5 50 13493.5 51 12905.0 52 11898.5 53 12229.0 54 12786.0 55 12497.5 56 10604.0 57 8797.0 58 8256.0 59 8041.0 60 6859.5 61 4989.5 62 3985.5 63 2779.0 64 1551.0 65 996.0 66 815.0 67 701.5 68 508.0 69 289.0 70 135.5 71 82.5 72 60.0 73 58.0 74 52.5 75 39.0 76 21.5 77 14.0 78 9.5 79 3.5 80 4.0 81 2.5 82 1.0 83 0.5 84 0.5 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4922024615900104 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 9.628373661776415E-4 22-23 0.0012998304443398161 24-25 4.3327681477993874E-4 26-27 0.0022626678105174577 28-29 0.0036587819914750378 30-31 5.295605513977029E-4 32-33 1.4442560492664624E-4 34-35 0.004092058806254977 36-37 0.0015405397858842265 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.008280401349127718 46-47 0.07827867787024226 48-49 7.221280246332312E-4 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.006451010353390198 58-59 0.039524473881592186 60-61 0.02989610021981577 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 2.888512098532925E-4 78-79 0.006788003431552374 80-81 0.0052474636456681465 82-83 7.221280246332312E-4 84-85 0.001733107259119755 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06754304123736156 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1038597.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.369988008051166 #Duplication Level Percentage of deduplicated Percentage of total 1 58.53234495050504 15.434972344279323 2 14.007478781937643 7.387540950054537 3 6.803126529800377 5.38195095024272 4 4.248366899111198 4.4811753673345525 5 2.854158176395796 3.763205844231917 6 2.149196396193429 3.40045699167405 7 1.676305793284753 3.0942914566721944 8 1.2845464832400946 2.7098780287060475 9 1.093664870871639 2.5955936576740757 >10 6.748728952335285 32.493216096407785 >50 0.4001691208310741 7.2164675847871536 >100 0.1891105878991422 9.077020535132114 >500 0.010973535081081615 2.024928718151871 >1k 0.0018289225135136025 0.9393014746516894 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTTAATACTTCAGTACTTCTAGCATCAGGTGTTTCAATTACATGAGCTC 3823 0.3680927250897124 No Hit ATGTAGAACCATAGATACCATCTGAAATGGAGAATGATGTTTCAAAGTAT 1782 0.17157761865285573 No Hit GCCTTATAGAAGGTAAACGAAACCACATAAATCAAGCCCTACTAATTACC 1682 0.1619492449910793 No Hit CAATAAGGAATGTTGATCCAATAATTACATGGAGTCCATGGAATCCAGTA 1387 0.1335455426888389 No Hit ATTACATGGAGTCCATGGAATCCAGTAGCCATGAAGAATGTAGAACCATA 1064 0.10244589576130106 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 9.628373661776415E-5 0.0 4 0.0 0.0 0.0 9.628373661776415E-5 0.0 5 0.0 0.0 0.0 9.628373661776415E-5 0.0 6 0.0 0.0 0.0 9.628373661776415E-5 0.0 7 0.0 0.0 0.0 9.628373661776415E-5 0.0 8 0.0 0.0 0.0 9.628373661776415E-5 0.0 9 0.0 0.0 0.0 2.888512098532925E-4 0.0 10-11 0.0 0.0 0.0 3.851349464710566E-4 0.0 12-13 0.0 0.0 0.0 3.851349464710566E-4 0.0 14-15 0.0 0.0 0.0 3.851349464710566E-4 0.0 16-17 0.0 0.0 0.0 3.851349464710566E-4 0.0 18-19 0.0 0.0 0.0 3.851349464710566E-4 0.0 20-21 0.0 0.0 0.0 5.295605513977029E-4 0.0 22-23 0.0 0.0 0.0 8.665536295598775E-4 0.0 24-25 0.0 0.0 0.0 0.001251688576030934 0.0 26-27 0.0 0.0 0.0 0.0016849653908108727 0.0 28-29 0.0 0.0 0.0 0.003081079571768453 0.0 30-31 0.0 0.0 0.0 0.0067398615632434915 0.0 32-33 0.0 0.0 0.0 0.017764349405977486 0.0 34-35 0.0 0.0 0.0 0.035721266285190505 0.0 36-37 0.0 0.0 0.0 0.06763932497397931 0.0 38-39 0.0 0.0 0.0 0.12579470189110886 0.0 40-41 0.0 0.0 0.0 0.19198977081582175 0.0 42-43 0.0 0.0 0.0 0.2591958189750211 0.0 44-45 0.0 0.0 0.0 0.3419998324662983 0.0 46-47 0.0 0.0 0.0 0.4481045102190744 0.0 48-49 0.0 0.0 0.0 0.5563274301774412 0.0 50-51 0.0 0.0 0.0 0.6684498414688277 0.0 52-53 0.0 0.0 0.0 0.7877453911382375 0.0 54-55 0.0 0.0 0.0 0.9025156051866123 0.0 56-57 0.0 0.0 0.0 1.0346168918261847 0.0 58-59 0.0 0.0 0.0 1.193773908455349 0.0 60-61 0.0 0.0 0.0 1.3726690910911548 0.0 62-63 0.0 0.0 0.0 1.5484350522868833 0.0 64-65 0.0 0.0 0.0 1.7301224632846042 0.0 66-67 0.0 0.0 0.0 1.9410319883458165 0.0 68-69 0.0 0.0 0.0 2.1923806827864896 0.0 70-71 0.0 0.0 0.0 2.4702555466653573 0.0 72-73 0.0 0.0 0.0 2.7573255073912213 0.0 74-75 0.0 0.0 0.0 3.0454064473515716 0.0 76-77 0.0 0.0 0.0 3.365212878527475 0.0 78-79 0.0 0.0 0.0 3.732150198777774 0.0 80-81 0.0 0.0 0.0 4.145399996341219 0.0 82-83 0.0 0.0 0.0 4.595237613819412 0.0 84-85 0.0 0.0 0.0 5.045027089429297 0.0 86-87 0.0 0.0 0.0 5.492216904150503 0.0 88-89 0.0 0.0 0.0 5.990870376093904 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACCGTA 60 1.494247E-6 47.4903 7 CCGTGCG 85 7.234121E-9 44.69675 9 ACCGTAT 55 4.968966E-5 43.172997 8 ATGCGGG 80 2.2659515E-7 41.554012 8 CGCACTG 60 8.300184E-5 39.57525 5 AATGCGG 85 3.6460915E-7 39.109657 7 AAATGCG 85 3.6460915E-7 39.109657 6 GGTATCA 675 0.0 33.216038 1 AACCGTG 120 1.5082878E-7 31.660198 7 TCGCACT 60 0.0039547305 31.660198 4 GTATCAA 1230 0.0 31.414757 1 ACCGTGC 125 2.1574306E-7 30.39379 8 TCAACGC 1205 0.0 30.3465 4 ATCAACG 1215 0.0 30.096731 3 GGACGAC 65 0.0058496525 29.2248 9 CGGATCG 45 8.960669E-4 26.3835 36-37 TTCGCAC 90 8.9576404E-4 26.3835 3 TGCGCGG 75 1.0626918E-6 25.32816 12-13 CAACGCA 1460 0.0 25.046253 5 CGCAGAG 1520 0.0 24.682457 8 >>END_MODULE