##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224538_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 889795 Sequences flagged as poor quality 0 Sequence length 101 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.1770003202985 34.0 33.0 34.0 31.0 34.0 2 33.30381379980782 34.0 34.0 34.0 31.0 34.0 3 33.41606774594148 34.0 34.0 34.0 31.0 34.0 4 36.631167853269574 37.0 37.0 37.0 35.0 37.0 5 36.657914463443824 37.0 37.0 37.0 35.0 37.0 6 36.697023471698536 37.0 37.0 37.0 36.0 37.0 7 36.67586466545665 37.0 37.0 37.0 36.0 37.0 8 36.66419793323181 37.0 37.0 37.0 35.0 37.0 9 38.513464337291175 39.0 39.0 39.0 37.0 39.0 10-11 38.536338145303134 39.0 39.0 39.0 37.5 39.0 12-13 38.515015818250276 39.0 39.0 39.0 37.0 39.0 14-15 40.12794126737057 41.0 40.0 41.0 38.0 41.0 16-17 40.13209334734405 41.0 40.0 41.0 38.0 41.0 18-19 40.10682797723071 41.0 40.0 41.0 38.0 41.0 20-21 40.101095196084486 41.0 40.0 41.0 38.0 41.0 22-23 40.026562298057414 41.0 40.0 41.0 38.0 41.0 24-25 39.985799538095854 41.0 40.0 41.0 38.0 41.0 26-27 39.91955899954483 41.0 40.0 41.0 38.0 41.0 28-29 39.895479857720034 41.0 40.0 41.0 38.0 41.0 30-31 39.83839198916604 41.0 40.0 41.0 38.0 41.0 32-33 39.806457105288295 41.0 40.0 41.0 37.0 41.0 34-35 39.72324130839126 41.0 40.0 41.0 37.0 41.0 36-37 39.58823774015363 41.0 40.0 41.0 37.0 41.0 38-39 39.46212835540771 41.0 39.0 41.0 36.0 41.0 40-41 39.324333132912635 41.0 39.0 41.0 35.5 41.0 42-43 39.21194488618165 41.0 39.0 41.0 35.0 41.0 44-45 38.94036884900454 40.5 38.5 41.0 35.0 41.0 46-47 38.697167886985206 40.0 38.0 41.0 35.0 41.0 48-49 38.568669749773825 40.0 37.0 41.0 35.0 41.0 50-51 38.34399608898679 40.0 37.0 41.0 35.0 41.0 52-53 38.03298344000584 39.5 36.0 41.0 35.0 41.0 54-55 37.77577419517979 39.0 35.5 41.0 34.0 41.0 56-57 37.45457380632618 39.0 35.0 41.0 34.0 41.0 58-59 37.104893823858305 37.5 35.0 41.0 34.0 41.0 60-61 36.77450143010469 37.0 35.0 40.5 33.0 41.0 62-63 36.49239206783585 36.5 35.0 40.0 33.0 41.0 64-65 36.18127658617996 36.0 35.0 39.5 33.0 41.0 66-67 35.84973224169612 35.0 35.0 39.0 33.0 41.0 68-69 35.53370832607511 35.0 35.0 39.0 32.5 41.0 70-71 35.21958260048663 35.0 35.0 37.5 32.0 40.5 72-73 34.91919599458302 35.0 35.0 37.0 32.0 39.5 74-75 34.63926578593946 35.0 35.0 36.5 32.0 39.0 76-77 32.94045931928141 34.5 32.0 35.0 28.5 36.5 78-79 34.223467765047005 35.0 34.5 36.0 31.5 37.0 80-81 34.20381042824471 35.0 35.0 35.0 32.0 37.0 82-83 34.07228743699392 35.0 35.0 35.0 32.0 36.5 84-85 33.95049590074118 35.0 35.0 35.0 32.0 36.0 86-87 33.82303620496856 35.0 35.0 35.0 32.0 36.0 88-89 33.73249737299041 35.0 34.5 35.0 31.5 36.0 90-91 33.629628172781366 35.0 34.0 35.0 31.0 35.5 92-93 33.57636815221484 35.0 34.0 35.0 31.0 35.0 94-95 33.505449007917555 35.0 34.0 35.0 31.0 35.0 96-97 33.48208857096297 35.0 34.0 35.0 31.0 35.0 98-99 33.46271613124371 35.0 34.0 35.0 31.0 35.0 100-101 32.564157474474456 34.5 32.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 3.0 14 10.0 15 50.0 16 86.0 17 149.0 18 278.0 19 419.0 20 555.0 21 847.0 22 1097.0 23 1451.0 24 1831.0 25 2734.0 26 3892.0 27 5719.0 28 7799.0 29 7698.0 30 7131.0 31 7734.0 32 9506.0 33 12544.0 34 22323.0 35 49529.0 36 149240.0 37 305504.0 38 246358.0 39 45301.0 40 6.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 44.867628193546054 16.842906443103388 11.987316156542478 26.302149206808078 2 17.653841615203504 19.013368247742456 35.491096263746144 27.8416938733079 3 20.47628948240887 25.157367708292362 26.730089515000643 27.636253294298125 4 14.226760096426705 16.268241561258492 35.29037587309436 34.21462246922044 5 15.40062598688462 36.587191431734276 33.051433195286556 14.960749386094548 6 32.3039576531673 33.574699790401155 19.092937137205762 15.028405419225777 7 29.323608246843374 28.894633033451527 21.037542355261603 20.744216364443496 8 28.25190071870487 31.359358054383314 19.606426199293097 20.782315027618722 9 27.97835456481549 14.315656977168898 18.516849386656478 39.189139071359136 10-11 28.009597716327917 22.9081979557089 25.86090054450744 23.221303783455742 12-13 28.54230468815851 21.067998808714368 25.927207952393527 24.462488550733596 14-15 25.601458762973493 22.920728931944996 23.01856045493625 28.459251850145257 16-17 25.61567552076602 25.165852808793037 24.150787540950443 25.0676841294905 18-19 25.43743221753325 24.739012918705996 24.91365988795172 24.909894975809035 20-21 26.354630668679874 23.472547751408896 24.29425803040154 25.878563549509686 22-23 26.7093774549525 24.24388867847554 23.680886238554795 25.365847628017168 24-25 26.393531057890062 23.53538475370593 24.147664055563673 25.923420132840334 26-27 25.80415308874245 25.052218462830062 24.472350485489812 24.671277962937676 28-29 25.69726511134438 24.910313094962472 24.72610653185908 24.66631526183406 30-31 25.501369709059745 24.17627804391498 24.954890914965652 25.36746133205962 32-33 25.611040308206167 24.675711456809104 24.907338102976645 24.805910132008083 34-35 26.385991728106458 23.71566489839957 24.34881316310016 25.54953021039381 36-37 24.744907993800695 24.304629137413084 25.28341370927772 25.667049159508505 38-39 25.405627138835353 24.159104063295477 24.44821560022252 25.98705319764665 40-41 25.505088250664482 24.049134913097962 24.983732207980488 25.46204462825707 42-43 25.702774234514692 24.151012311824633 25.334992891621106 24.811220562039573 44-45 25.660259450662338 23.565344836500227 25.065694382315456 25.708701330521983 46-47 25.40079946192658 23.41901567656209 24.88623301368353 26.293951847827802 48-49 25.03339280446174 23.704086649902365 25.2957026256269 25.96681792000899 50-51 25.27885636579212 24.044077568428683 24.896240145201983 25.78082592057721 52-53 25.487921923501393 24.226506359899034 24.567708930381638 25.717862786217932 54-55 25.49047814384212 23.492658421321767 24.780876494023904 26.23598694081221 56-57 25.932436464954638 23.720967871551395 24.436244661977206 25.910351001516762 58-59 26.034698614742613 24.0977781125847 24.806344491211224 25.061178781461468 60-61 25.372807966727358 25.059092219838234 24.190007976395712 25.378091837038696 62-63 24.88994656072466 24.398597429745053 24.930124354486146 25.781331655044138 64-65 25.517506841463483 24.096561567552076 24.339932231581432 26.04599935940301 66-67 25.178664748621877 24.350046920919986 24.181524957995943 26.289763372462193 68-69 25.238847150186277 24.566445080046527 24.85853483105659 25.3361729387106 70-71 25.901584072735854 24.350608848105463 24.504183547895863 25.24362353126282 72-73 25.270820807039822 24.38297585398884 24.90820919425261 25.43799414471873 74-75 25.408942509229654 24.08970605588928 25.085553413988613 25.415798020892456 76-77 25.554060827562335 23.331299154635794 24.448636425959265 26.666003591842607 78-79 25.7066525199416 23.211662506195747 24.518529924482113 26.563155049380537 80-81 24.943073257356083 24.29979544586059 24.486872569514688 26.27025872726864 82-83 24.82802102520935 24.4758588833982 25.00238820664225 25.693731884750203 84-85 25.216726260417666 23.667682092485233 25.170366199525834 25.945225447571268 86-87 25.10994105383824 24.729179192960178 24.47760439202288 25.683275361178698 88-89 25.577801628464986 23.711585252782942 23.963441017312974 26.747172101439094 90-91 25.464011373406237 23.693772161003377 24.121848290898466 26.72036817469192 92-93 25.369944762557665 23.909271236633156 24.753679218246898 25.967104782562277 94-95 25.481037767126136 23.50732472086267 24.63668597823094 26.374951533780255 96-97 25.932433875218447 24.14123477879736 24.45080046527571 25.47553088070848 98-99 24.049078720379413 24.39708022634427 25.144949117493354 26.408891935782965 100-101 25.180167211366957 23.838641255817198 24.462085036224632 26.519106496591217 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.5 3 2.5 4 2.0 5 1.0 6 2.5 7 6.5 8 10.5 9 8.5 10 7.5 11 9.0 12 10.5 13 11.5 14 12.0 15 15.0 16 16.5 17 16.5 18 19.0 19 23.0 20 29.0 21 34.0 22 41.0 23 55.0 24 64.0 25 71.5 26 89.5 27 126.0 28 161.0 29 169.5 30 208.5 31 281.0 32 402.0 33 684.5 34 1247.5 35 2352.5 36 4431.5 37 7446.5 38 11004.5 39 14541.0 40 17804.0 41 20279.5 42 21996.0 43 23965.5 44 26003.0 45 28673.0 46 31187.0 47 32458.5 48 34050.5 49 38795.5 50 44703.5 51 45984.0 52 45136.5 53 46658.0 54 50845.5 55 52839.5 56 46163.5 57 39951.5 58 39146.0 59 37859.5 60 32041.0 61 24702.0 62 20157.5 63 14393.5 64 8874.0 65 5763.5 66 4252.0 67 3461.5 68 2530.0 69 1630.0 70 1060.5 71 753.5 72 582.0 73 467.0 74 346.5 75 252.5 76 165.0 77 94.0 78 59.5 79 39.5 80 19.5 81 12.0 82 9.5 83 4.0 84 1.5 85 2.5 86 2.0 87 1.0 88 0.5 89 0.5 90 1.0 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4786495765878657 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 5.057344669277755E-4 22-23 0.0013486252451407345 24-25 5.619271854753061E-4 26-27 0.0026410577717339385 28-29 0.00370871942413702 30-31 8.428907782129592E-4 32-33 1.1238543709506121E-4 34-35 0.003933490298327143 36-37 0.002022937867711102 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.007754595159559225 46-47 0.07833264965525767 48-49 8.428907782129592E-4 50-51 0.0 52-53 1.1238543709506121E-4 54-55 0.0 56-57 0.0078107878781067544 58-59 0.04422366949690659 60-61 0.03320989666159059 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 1.1238543709506121E-4 78-79 0.008091751470844408 80-81 0.006181199040228368 82-83 6.743126225703673E-4 84-85 0.002303901460448755 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06979135643603301 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 889795.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.03557099336669 #Duplication Level Percentage of deduplicated Percentage of total 1 74.5730301075712 34.33012021707565 2 14.40817364174895 13.26577001138977 3 4.964599781203943 6.856445570438006 4 2.205566154146887 4.06137989079183 5 1.1209306957785816 2.5801342312079405 6 0.6489966927241673 1.7926159993418154 7 0.4152860925036668 1.338255267580728 8 0.26693231243685633 0.9830705135688351 9 0.19498910582100723 0.8078791341560463 >10 0.9474243445019953 7.989405999174207 >50 0.09913226992423674 3.1999303754679818 >100 0.13119620486478908 13.22129188296505 >500 0.01762337080114024 5.435835663135399 >1k 0.006119225972618138 4.1378652437067664 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGT 2934 0.32973887243690964 No Hit GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 2028 0.22791766642878417 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 2024 0.22746812468040392 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 1915 0.21521811203704225 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 1802 0.2025185576453003 No Hit CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG 1703 0.19139239937288927 No Hit ATCTTACACGCTTGCAGATCCAGCTATACGAAGCATTAGGCGAGCGTGCA 1603 0.18015385566338313 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 1520 0.17082586438449304 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 1519 0.170713478947398 No Hit ATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCTT 1498 0.1683533847684017 TruSeq Adapter, Index 3 (95% over 21bp) TCCTTTCACCGGGCAATGGTCGGGCGACGTTTGCCGCTTCTGAAAACCGC 1456 0.16363319641040916 No Hit TCATTTAGGTGAGAAAACCCTCTCTACTTTGGCGCGACTGCGTGAACGCG 1399 0.15722722649599064 No Hit ACATTACCCTCACTTTTGCCACGGGGCGTCATGCGCTGGAGATGCAGCAT 1372 0.154192819694424 No Hit GCATATTCTCGGGGCGCTATCGCTGGATGCGTATTTGATTACCGGCAACG 1286 0.14452767210424874 No Hit GTCTATAGCGGTTTTCGTTATCAGATAATCGATGTCAAAAAAATGCCACT 1251 0.1405941818059216 No Hit GTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCC 1227 0.13789693131564013 No Hit GTATCAGCAATGGGATACCCGAGCCAGCATGCATATCTTCAATGACGACG 1224 0.13755977500435493 No Hit GACTAACATTTCGCGATCGTTCATCGCATCACCAAAGGCCGTGCAATCGC 1220 0.1371102332559747 No Hit GAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCAT 1210 0.13598637888502407 No Hit GCATTAGGCGAGCGTGCACATTTGTGTTTTTCCGCCACGGATTGCCTCGA 1155 0.12980517984479573 No Hit CTTTTACATCGTGATGATTTACCTGCGGATGTCGCGGAGCTGGTGCTGTA 1152 0.12946802353351053 No Hit GTATCAACGCAGAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCG 1104 0.1240735225529476 No Hit GCTATAGACAAATGCCTGCAACAACGCAGGGATCTCTTTCCCGGTAAACC 1096 0.1231744390561871 No Hit GGCCTGACCTGGCTGGCCTTTTGCCCGGAACAAGACCGCAAGGAATTAAT 1016 0.1141836040885822 No Hit GTTTTCGACTGACCATCAAAGTGCGGCAATTAAGCGAAGGATTTCGTGAC 1008 0.11328452059182172 No Hit GGTCAGGCCCGAGGCGGTTTTCAGAAGCGGCAAACGTCGCCCGACCATTG 989 0.11114919728701556 No Hit GGATGGCACTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCT 977 0.10980057204187481 No Hit ATATACACCAGATTCAGACAGCCAATCACCCGTTGTTCACTGCGCAGCGG 973 0.10935103029349456 No Hit GTGAAAGGATAAGCGGCTGAAACGGTGAGTGGTTTCGCGTACCACCATTG 922 0.10361937300164645 No Hit CTCTACTTTGGCGCGACTGCGTGAACGCGACATTACCCTCACTTTTGCCA 907 0.10193359144522053 No Hit ACTTTGGCGCGACTGCGTGAACGCGACATTACCCTCACTTTTGCCACGGG 893 0.10036019532588968 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.1238543709506122E-4 0.0 3 0.0 0.0 0.0 1.1238543709506122E-4 0.0 4 0.0 0.0 0.0 1.1238543709506122E-4 0.0 5 0.0 0.0 0.0 1.1238543709506122E-4 0.0 6 0.0 0.0 0.0 1.1238543709506122E-4 0.0 7 0.0 0.0 0.0 1.1238543709506122E-4 0.0 8 0.0 0.0 0.0 1.1238543709506122E-4 0.0 9 0.0 0.0 0.0 1.1238543709506122E-4 0.0 10-11 0.0 0.0 0.0 2.2477087419012245E-4 0.0 12-13 0.0 0.0 0.0 2.2477087419012245E-4 0.0 14-15 0.0 0.0 0.0 2.2477087419012245E-4 5.619271854753061E-5 16-17 0.0 0.0 0.0 2.2477087419012245E-4 2.2477087419012245E-4 18-19 0.0 0.0 0.0 2.809635927376531E-4 3.371563112851837E-4 20-21 0.0 0.0 0.0 4.4954174838024495E-4 3.371563112851837E-4 22-23 0.0 0.0 0.0 8.428907782129591E-4 3.371563112851837E-4 24-25 0.0 0.0 0.0 0.0016857815564259183 4.495417483802449E-4 26-27 0.0 0.0 0.0 0.0025286723346388774 4.495417483802449E-4 28-29 0.0 0.0 0.0 0.004214453891064796 4.495417483802449E-4 30-31 0.0 0.0 0.0 0.01208143448771908 4.495417483802449E-4 32-33 0.0 0.0 0.0 0.032760354913210346 4.495417483802449E-4 34-35 0.0 0.0 0.0 0.05658606757736333 4.495417483802449E-4 36-37 0.0 0.0 0.0 0.0956400069678971 4.495417483802449E-4 38-39 0.0 0.0 0.0 0.17813091779567203 4.495417483802449E-4 40-41 0.0 0.0 0.0 0.28096359273765303 4.495417483802449E-4 42-43 0.0 0.0 0.0 0.37722171960957296 5.057344669277755E-4 44-45 0.0 0.0 0.0 0.47904292561769846 5.619271854753062E-4 46-47 0.0 0.0 0.0 0.5876634505700751 6.181199040228367E-4 48-49 0.0 0.0 0.0 0.7033642580594407 7.866980596654286E-4 50-51 0.0 0.0 0.0 0.8324389325631185 7.866980596654286E-4 52-53 0.0 0.0 0.0 0.9561752988047809 8.428907782129591E-4 54-55 0.0 0.0 0.0 1.0787878106754927 8.990834967604898E-4 56-57 0.0 0.0 0.0 1.2193257997628668 8.990834967604898E-4 58-59 0.0 0.0 0.0 1.3676183840098 8.990834967604898E-4 60-61 0.0 0.0 0.0 1.540635764417647 8.990834967604898E-4 62-63 0.0 0.0 0.0 1.7159008535673947 0.0013486252451407347 64-65 0.0 0.0 0.0 1.8795902426963513 0.0013486252451407347 66-67 0.0 0.0 0.0 2.0601374473895673 0.0013486252451407347 68-69 0.0 0.0 0.0 2.2680505060154306 0.0013486252451407347 70-71 0.0 0.0 0.0 2.499789277305447 0.001461010682235796 72-73 0.0 0.0 0.0 2.7458571918250834 0.0017981669935209796 74-75 0.0 0.0 0.0 2.9861934490528714 0.0017981669935209796 76-77 0.0 0.0 0.0 3.2240572266645686 0.0017981669935209796 78-79 0.0 0.0 0.0 3.4890058946161755 0.0017981669935209796 80-81 0.0 0.0 0.0 3.796548643226811 0.0017981669935209796 82-83 0.0 0.0 0.0 4.131794402081378 0.0017981669935209796 84-85 0.0 0.0 0.0 4.46057799830298 0.0017981669935209796 86-87 0.0 0.0 0.0 4.806949915429959 0.0017981669935209796 88-89 0.0 0.0 0.0 5.166527121415607 0.0017981669935209796 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 1240 0.0 52.336037 1 GGTATCA 570 0.0 49.392475 1 ATCAACG 1780 0.0 35.751064 3 TCAACGC 1850 0.0 34.398323 4 TAATACC 115 1.0378244E-7 33.036674 4 TAGCGTT 90 2.4157513E-5 31.66015 6 AATGCGG 225 0.0 31.660149 7 AAACCGT 160 1.9081199E-9 29.68139 6 GTACATG 4480 0.0 29.07825 1 TACATGG 4505 0.0 28.884176 2 AAATGCG 260 0.0 27.398205 6 ACATGGG 4700 0.0 27.180573 3 CGCAGAG 2425 0.0 26.24202 8 TATCAAC 2460 0.0 26.061707 2 ACGCAGA 2480 0.0 25.66004 7 CAACGCA 2530 0.0 25.152924 5 AACCGTG 190 1.19289325E-8 24.994854 7 GTATAGT 115 1.2421765E-4 24.896427 1 ACCGTGC 210 1.2678356E-9 24.87583 8 ATAGCGT 115 1.2832278E-4 24.777506 5 >>END_MODULE