##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224536_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1337646 Sequences flagged as poor quality 0 Sequence length 101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.324391505674896 34.0 31.0 34.0 31.0 34.0 2 32.49225505103742 34.0 31.0 34.0 31.0 34.0 3 32.63040669953037 34.0 31.0 34.0 31.0 34.0 4 35.90308048616749 37.0 37.0 37.0 35.0 37.0 5 35.91463959821956 37.0 37.0 37.0 35.0 37.0 6 36.00909358679352 37.0 37.0 37.0 35.0 37.0 7 35.96942090807284 37.0 37.0 37.0 35.0 37.0 8 36.010398117289625 37.0 37.0 37.0 35.0 37.0 9 37.75648116168254 39.0 39.0 39.0 35.0 39.0 10-11 37.828541706849194 39.0 39.0 39.0 37.0 39.0 12-13 37.81977257062033 39.0 39.0 39.0 37.0 39.0 14-15 39.33782966494872 41.0 40.0 41.0 37.0 41.0 16-17 39.174488616569704 41.0 40.0 41.0 36.5 41.0 18-19 39.259501392745165 41.0 40.0 41.0 36.5 41.0 20-21 39.31617034701259 41.0 40.0 41.0 37.0 41.0 22-23 39.276365346287434 41.0 40.0 41.0 37.0 41.0 24-25 39.22151338994024 41.0 40.0 41.0 36.0 41.0 26-27 39.060973157322636 41.0 39.5 41.0 36.0 41.0 28-29 39.005421090482834 41.0 39.0 41.0 35.5 41.0 30-31 38.93763858300328 41.0 39.0 41.0 35.0 41.0 32-33 38.756666562005194 41.0 39.0 41.0 35.0 41.0 34-35 38.76862749935334 41.0 39.0 41.0 35.0 41.0 36-37 38.75389415435773 41.0 39.0 41.0 35.0 41.0 38-39 38.63447242394475 41.0 39.0 41.0 35.0 41.0 40-41 38.54533075268046 40.5 39.0 41.0 35.0 41.0 42-43 38.410024027283754 40.0 38.0 41.0 34.5 41.0 44-45 38.23167564512584 40.0 38.0 41.0 34.0 41.0 46-47 38.065282593451485 40.0 38.0 41.0 34.0 41.0 48-49 37.85702644795409 40.0 37.0 41.0 33.0 41.0 50-51 36.57193569898165 38.5 35.5 40.0 31.5 40.5 52-53 36.86994914947602 39.0 35.5 40.0 32.5 40.5 54-55 37.2927138420778 39.0 35.5 41.0 33.0 41.0 56-57 37.132147444092084 39.0 35.0 41.0 33.0 41.0 58-59 36.976994286978766 39.0 35.0 41.0 33.0 41.0 60-61 36.72889763061378 39.0 35.0 41.0 32.0 41.0 62-63 36.4613821594054 38.0 35.0 41.0 32.0 41.0 64-65 36.23976373420172 37.0 35.0 41.0 32.0 41.0 66-67 36.03566601328005 37.0 35.0 40.0 31.0 41.0 68-69 35.76781599915075 36.0 35.0 40.0 31.0 41.0 70-71 35.51069378594934 36.0 35.0 39.5 31.0 41.0 72-73 35.2123992446432 35.5 35.0 39.0 30.5 41.0 74-75 34.94771449247409 35.0 35.0 39.0 30.0 41.0 76-77 34.646620630570425 35.0 34.5 37.5 30.0 40.0 78-79 34.40093716872775 35.0 34.0 37.0 30.0 39.0 80-81 34.08980402886863 35.0 34.0 37.0 30.0 39.0 82-83 33.81531473947517 35.0 34.0 36.0 29.0 38.5 84-85 33.568587279444635 35.0 34.0 36.0 29.0 37.0 86-87 33.33639206486619 35.0 34.0 35.5 29.0 37.0 88-89 33.184100651442904 35.0 34.0 35.0 29.0 36.5 90-91 33.00424364891758 35.0 34.0 35.0 29.0 36.0 92-93 32.869985780991385 35.0 34.0 35.0 29.0 36.0 94-95 32.731445016095435 35.0 34.0 35.0 27.0 36.0 96-97 32.598835566360606 35.0 33.0 35.0 27.0 35.5 98-99 32.5568846316589 35.0 33.0 35.0 27.0 35.0 100-101 31.353576357272402 34.5 31.0 35.0 23.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 12.0 7 482.0 8 2088.0 9 1492.0 10 1074.0 11 1406.0 12 1885.0 13 2096.0 14 2085.0 15 2231.0 16 2347.0 17 2492.0 18 2838.0 19 3139.0 20 3809.0 21 4911.0 22 5907.0 23 5994.0 24 6053.0 25 6232.0 26 6609.0 27 6936.0 28 7485.0 29 8681.0 30 10891.0 31 13793.0 32 18314.0 33 27179.0 34 46609.0 35 85900.0 36 194359.0 37 321094.0 38 386910.0 39 144301.0 40 12.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.12979248327474 20.414584199078288 13.32172767126775 25.133895646379223 2 15.85793251727288 21.123974504465306 37.75333683201684 25.26475614624497 3 18.451919942824844 28.435592728708087 28.789573309490418 24.32291401897665 4 12.725265129937219 17.920286832241118 39.70048876907642 29.653959268745243 5 13.478005391560997 39.28371183407269 34.39744147554734 12.840841298818969 6 27.85931404870945 38.55653887500878 20.22104502985095 13.36310204643082 7 25.256757019420682 31.529492855359344 24.91600916834499 18.29774095687499 8 25.07195476232127 34.39273170928631 22.073852125300714 18.4614614030917 9 26.825333458927098 15.526155649551526 21.029853937439352 36.61865695408203 10-11 25.538969204109307 25.38208913270028 28.004756116341696 21.074185546848717 12-13 25.94266345505463 23.365561591033803 28.206491104522424 22.485283849389152 14-15 23.398339210947583 24.952108443759066 25.300091127638147 26.3494612176552 16-17 23.13136281934503 27.25032684995202 26.765223539181783 22.853086791521164 18-19 22.881789708369276 27.076914103554913 27.006884442834224 23.03441174524159 20-21 24.098931076197047 25.656527128826166 26.37248357910915 23.87205821586764 22-23 24.247178016318845 26.558851890835673 25.73022965624502 23.46374043660047 24-25 23.412636103023317 26.42159523734752 26.190064946620545 23.975703713008613 26-27 23.178030659830778 27.27048112878893 26.734689147950952 22.81679906342934 28-29 23.032588592198532 27.11909578468444 26.737529959346496 23.110785663770532 30-31 23.303026361234586 26.462046012173623 26.702318849680708 23.532608776911083 32-33 23.216045201794795 26.48010011617423 27.01656492076379 23.287289761267182 34-35 23.679695524824954 26.1238773188123 26.749341754096374 23.447085402266367 36-37 22.928485089579176 26.231243968888908 27.380132075958446 23.460138865573473 38-39 23.038331365839472 26.668525755229812 26.470966444448262 23.822176434482454 40-41 23.701315450090277 26.01309095258922 27.25359141424903 23.032002183071477 42-43 23.47073993373951 26.607889730820023 26.989954765981892 22.931415569458572 44-45 23.325170011061793 26.115478548755444 26.612343376923803 23.947008063258956 46-47 23.503864251079882 26.037643741318707 26.49576195794702 23.962730049654393 48-49 22.93106696390525 26.547831040499503 26.67211653905443 23.84898545654082 50-51 22.83694639687929 26.92020160789925 26.43853455996579 23.804317435255665 52-53 23.362346988665163 26.52704826239528 26.04997884343092 24.06062590550863 54-55 23.20468195621263 26.092366739780182 26.437712219824977 24.265239084182213 56-57 23.21459609440618 26.535281582452154 26.367748405687458 23.882373917454213 58-59 23.702967076720046 26.385430238274598 26.67482910288595 23.236773582119405 60-61 23.410663407620202 26.61503934296666 26.57884987014036 23.39544737927278 62-63 22.8075075556772 26.234380602726738 27.307038118452233 23.651073723143835 64-65 23.998587869590356 25.835142750079093 26.159491453544426 24.006777926786125 66-67 23.043129109176515 26.56151511548875 25.915412183163937 24.479943592170798 68-69 23.027579793159028 26.58180863995407 27.238222967810614 23.152388599076286 70-71 23.699543825496434 25.95746557758929 26.752818010146186 23.590172586768098 72-73 23.298727765043964 26.321650122678196 27.08093172633118 23.298690385946657 74-75 23.265983675800623 26.01316043258082 27.007519179214828 23.71333671240373 76-77 23.12532613262403 25.748292149043916 26.374877957247282 24.751503761084773 78-79 23.364364739718642 25.241016488230784 27.04042930787415 24.35418946417643 80-81 22.810654694136463 26.440713085654355 26.52808343269716 24.220548787512026 82-83 22.805530789437466 26.787910111956155 26.67474224953476 23.73181684907162 84-85 23.145281875277394 25.52190851023177 27.29953639291327 24.033273221577563 86-87 22.809539874524155 26.893563958346267 26.803986442564543 23.492909724565035 88-89 23.186658111297575 25.960385051436912 26.50306018971381 24.3498966475517 90-91 22.916264841370587 25.784774148018236 26.76519049135571 24.53377051925547 92-93 22.85633330666872 25.784556404254477 27.243883274783325 24.115227014293477 94-95 23.14480064232241 25.307293558983467 27.145821839260908 24.402083959433213 96-97 23.49048253424299 26.158677258407682 26.94733883254613 23.4035013748032 98-99 22.23439125414583 26.23378720499806 27.277753086687405 24.254068454168706 100-101 23.107191432852822 25.664119573871485 26.791669050709622 24.437019942566067 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.5 3 2.0 4 1.5 5 2.5 6 4.5 7 10.5 8 18.0 9 20.5 10 25.0 11 25.5 12 32.0 13 41.0 14 41.5 15 48.0 16 56.0 17 62.0 18 69.0 19 83.0 20 95.5 21 117.0 22 141.5 23 164.0 24 210.0 25 264.5 26 361.0 27 473.5 28 626.0 29 928.0 30 1656.5 31 3351.5 32 6898.5 33 12976.5 34 21510.0 35 32220.5 36 46884.5 37 59791.5 38 64563.5 39 63664.5 40 57277.0 41 50003.0 42 45558.5 43 41076.0 44 38078.5 45 38398.0 46 40502.0 47 39499.0 48 39970.0 49 46083.0 50 52123.5 51 52857.0 52 51332.0 53 51532.0 54 54385.0 55 55816.0 56 46779.0 57 38327.0 58 36786.0 59 35204.5 60 29323.5 61 22253.0 62 17906.5 63 12650.0 64 7531.5 65 4756.5 66 3710.5 67 3273.0 68 2419.0 69 1501.5 70 927.0 71 588.0 72 439.5 73 311.0 74 252.0 75 212.0 76 151.0 77 95.0 78 63.0 79 46.5 80 31.0 81 24.5 82 23.0 83 20.5 84 16.0 85 13.0 86 12.0 87 8.5 88 6.0 89 4.5 90 4.5 91 7.5 92 7.0 93 6.5 94 5.5 95 3.0 96 3.0 97 3.0 98 4.5 99 3.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.15631938494938125 2 0.0 3 1.4951638923900643E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0381640583532564 16-17 0.07651501219306153 18-19 0.026576538187233392 20-21 0.041378660721895034 22-23 0.06795519890912843 24-25 0.01794196670868077 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.023137661234736245 38-39 0.005457348207223735 40-41 0.006055413764179761 42-43 0.0034762560498068995 44-45 0.011923932041810763 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 3.737909730975161E-5 58-59 0.016334665524361452 60-61 0.01797934580599052 62-63 0.03038920611282806 64-65 0.04926565025425262 66-67 0.01816624129253928 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.017755071222132015 80-81 0.0604046212525586 82-83 0.051882187065935226 84-85 0.030987271669784083 86-87 0.06092792861489512 88-89 0.03543538424964452 90-91 0.0 92-93 0.0032146023686386383 94-95 0.0 96-97 0.0 98-99 4.859282650267709E-4 100-101 0.047209799902216285 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1337646.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.346875513711694 #Duplication Level Percentage of deduplicated Percentage of total 1 68.46645415534606 25.57008140204958 2 15.537852009926539 11.60580449530403 3 6.36790101497176 7.134636194693661 4 3.0524193551645373 4.559933026918964 5 1.7422006268586068 3.253287496559943 6 1.1070260717586988 2.480637893544324 7 0.7087867278420128 1.852967878334069 8 0.49398926201589055 1.475916437889422 9 0.38319302513925263 1.2879955986838438 >10 1.7736399354779466 11.829626140830094 >50 0.15899454348392628 4.180539377509922 >100 0.17644227437045623 14.034791666937322 >500 0.022563468879154776 5.793732685813394 >1k 0.008537528765085591 4.940049704931394 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 3420 0.255673025598701 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 2925 0.21866771926204692 No Hit TAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCATCGCA 2900 0.21679876439655932 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 2862 0.2139579530010182 No Hit CCTTTATTGCAGCCCACCGGCAGCACTTCGAGGCAATCCGTGGCGGAAAA 2276 0.17014965095398932 No Hit CGCCTAATGCTTCGTATAGCTGGATCTGCAAGCGTGTAAGATCGTCGTGA 2159 0.16140294218350743 No Hit GTATAGCTGGATCTGCAAGCGTGTAAGATCGTCGTGATCGCCACAGAAGC 2119 0.1584126143987273 No Hit GTGTAAGATCGTCGTGATCGCCACAGAAGCAGATCTTGGTGACGCTGCCG 2112 0.15788930703639079 No Hit GTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCC 1958 0.1463765450649873 No Hit ATGTAAAAGTTCACCTTCCAGAGAATGCACGCGCGTTCCGTTGCCGGTAA 1803 0.1347890248989643 No Hit GACTAACATTTCGCGATCGTTCATCGCATCACCAAAGGCCGTGCAATCGC 1753 0.13105111516798915 No Hit ACTTAATACTTCAGTACTTCTAGCATCAGGTGTTTCAATTACATGAGCTC 1733 0.12955595127559907 No Hit TCCTTTCACCGGGCAATGGTCGGGCGACGTTTGCCGCTTCTGAAAACCGC 1674 0.12514521779304838 No Hit GCTATAGACAAATGCCTGCAACAACGCAGGGATCTCTTTCCCGGTAAACC 1663 0.12432287765223385 No Hit ATCTTACACGCTTGCAGATCCAGCTATACGAAGCATTAGGCGAGCGTGCA 1609 0.12028593514278067 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 1578 0.11796843110957608 No Hit ATATACACCAGATTCAGACAGCCAATCACCCGTTGTTCACTGCGCAGCGG 1576 0.11781891472033706 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 1454 0.10869841497675768 No Hit GGTCAGCACCGTCAATGCAGCGCCTTTATTGCAGCCCACCGGCAGCACTT 1434 0.10720325108436761 No Hit GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 1397 0.10443719788344599 No Hit TGCTGATACAGCACCAGCTCCGCGACATCCGCAGGTAAATCATCACGATG 1390 0.10391389052110947 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 1.4951638923900643E-4 0.0 16-17 0.0 0.0 0.0 1.4951638923900643E-4 0.0 18-19 0.0 0.0 0.0 2.9903277847801287E-4 0.0 20-21 0.0 0.0 0.0 5.606864596462741E-4 0.0 22-23 0.0 0.0 0.0 6.354446542657774E-4 0.0 24-25 0.0 0.0 0.0 8.223401408145353E-4 0.0 26-27 0.0 0.0 0.0 0.0010839938219827966 0.0 28-29 0.0 0.0 0.0 0.0016820593789388224 0.0 30-31 0.0 0.0 0.0 0.005419969109913983 0.0 32-33 0.0 0.0 0.0 0.015288050799688407 0.0 34-35 0.0 0.0 0.0 0.027735290203835694 0.0 36-37 0.0 0.0 0.0 0.05061129775740368 0.0 38-39 0.0 0.0 0.0 0.09823226773002722 0.0 40-41 0.0 0.0 0.0 0.16458016545483634 0.0 42-43 0.0 0.0 0.0 0.22920862470339687 0.0 44-45 0.0 0.0 0.0 0.29892064118608364 0.0 46-47 0.0 0.0 0.0 0.37879977213702276 0.0 48-49 0.0 0.0 0.0 0.4674256118584439 0.0 50-51 0.0 0.0 0.0 0.5661438078534978 0.0 52-53 0.0 0.0 0.0 0.6632920817615422 0.0 54-55 0.0 0.0 0.0 0.761748624075428 0.0 56-57 0.0 0.0 0.0 0.8746334979508779 0.0 58-59 0.0 0.0 0.0 1.0048622729780523 0.0 60-61 0.0 0.0 0.0 1.1503417197076056 0.0 62-63 0.0 0.0 0.0 1.301091619157834 0.0 64-65 0.0 0.0 0.0 1.446608444984697 0.0 66-67 0.0 0.0 0.0 1.6129080489157819 0.0 68-69 0.0 0.0 0.0 1.808512865137712 0.0 70-71 0.0 0.0 0.0 2.0345816456670898 0.0 72-73 0.0 0.0 0.0 2.2778074318616435 0.0 74-75 0.0 0.0 0.0 2.5019324993309144 0.0 76-77 0.0 0.0 0.0 2.7434388470492195 0.0 78-79 0.0 0.0 0.0 3.0216140892283905 0.0 80-81 0.0 0.0 0.0 3.3366825004522873 0.0 82-83 0.0 0.0 0.0 3.68389693536257 0.0 84-85 0.0 0.0 0.0 4.031896331316357 0.0 86-87 0.0 0.0 0.0 4.393202685912416 0.0 88-89 0.0 0.0 0.0 4.789570633785022 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 775 0.0 49.688683 1 GTATCAA 1675 0.0 44.561424 1 CCGTGCG 180 0.0 42.237106 9 AATGCGG 390 0.0 32.867924 7 AACCGTG 220 0.0 32.369923 7 ATCAACG 2390 0.0 30.193872 3 GTACATG 5400 0.0 29.845587 1 AAATGCG 435 0.0 29.467794 6 TCAACGC 2525 0.0 28.391521 4 ACATGGG 5415 0.0 28.055927 3 AAACCGT 245 0.0 27.12908 6 CGGACCG 140 5.833117E-7 27.12908 5 GACCGTA 160 6.27424E-8 26.705189 7 TACATGG 5965 0.0 26.264952 2 CATGGGG 4150 0.0 25.739939 4 ATGCGGG 480 0.0 25.71899 8 ACCGTGC 240 9.094947E-12 25.71899 8 CGCAGAG 2915 0.0 24.758644 8 GCCCATA 1525 0.0 24.62813 1 ACGCAGA 2950 0.0 24.462152 7 >>END_MODULE