##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224536_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1337646 Sequences flagged as poor quality 0 Sequence length 101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.19958942799515 34.0 33.0 34.0 31.0 34.0 2 33.326907866505785 34.0 34.0 34.0 31.0 34.0 3 33.44330189003668 34.0 34.0 34.0 31.0 34.0 4 36.65158644364802 37.0 37.0 37.0 35.0 37.0 5 36.682662677569404 37.0 37.0 37.0 35.0 37.0 6 36.72072506477797 37.0 37.0 37.0 37.0 37.0 7 36.6985286092135 37.0 37.0 37.0 36.0 37.0 8 36.69079337881622 37.0 37.0 37.0 36.0 37.0 9 38.54594264850341 39.0 39.0 39.0 38.0 39.0 10-11 38.57054557035269 39.0 39.0 39.0 37.5 39.0 12-13 38.553548547224004 39.0 39.0 39.0 37.5 39.0 14-15 40.17209112126825 41.0 40.0 41.0 38.0 41.0 16-17 40.18120115486459 41.0 40.0 41.0 38.0 41.0 18-19 40.17395147894136 41.0 40.0 41.0 38.5 41.0 20-21 40.17615348156389 41.0 40.0 41.0 39.0 41.0 22-23 40.11034608558617 41.0 40.0 41.0 38.0 41.0 24-25 40.07126362281201 41.0 40.0 41.0 38.0 41.0 26-27 40.01448776432629 41.0 40.0 41.0 38.0 41.0 28-29 39.99295852564879 41.0 40.0 41.0 38.0 41.0 30-31 39.93849456433167 41.0 40.0 41.0 38.0 41.0 32-33 39.90501859236301 41.0 40.0 41.0 38.0 41.0 34-35 39.82874056364688 41.0 40.0 41.0 38.0 41.0 36-37 39.711055092303944 41.0 40.0 41.0 37.0 41.0 38-39 39.602497596524046 41.0 40.0 41.0 37.0 41.0 40-41 39.4808869461726 41.0 39.5 41.0 36.0 41.0 42-43 39.39082313257768 41.0 39.0 41.0 36.0 41.0 44-45 39.154011973272446 41.0 39.0 41.0 35.0 41.0 46-47 38.94737583785246 41.0 38.5 41.0 35.0 41.0 48-49 38.8491858085024 40.0 38.0 41.0 35.0 41.0 50-51 38.67579127811095 40.0 37.5 41.0 35.0 41.0 52-53 38.41890754355039 40.0 37.0 41.0 35.0 41.0 54-55 38.21660289792666 40.0 36.5 41.0 35.0 41.0 56-57 37.97322086710535 40.0 35.5 41.0 35.0 41.0 58-59 37.705960321340626 39.0 35.0 41.0 34.0 41.0 60-61 37.46172006644508 39.0 35.0 41.0 34.0 41.0 62-63 37.25631931019119 38.5 35.0 41.0 34.0 41.0 64-65 37.01545849948342 38.0 35.0 41.0 33.5 41.0 66-67 36.7630202609659 37.0 35.0 40.5 33.0 41.0 68-69 36.51139950330655 37.0 35.0 40.0 33.0 41.0 70-71 36.23004255236438 36.0 35.0 40.0 33.0 41.0 72-73 35.943285069442894 36.0 35.0 39.0 33.0 41.0 74-75 35.65123059464163 35.0 35.0 39.0 33.0 41.0 76-77 33.812325906854284 34.5 32.5 36.5 29.5 39.0 78-79 35.08755305962863 35.0 35.0 37.0 32.5 39.0 80-81 34.99233616367858 35.0 35.0 37.0 33.0 39.0 82-83 34.770056128452524 35.0 35.0 36.5 33.0 39.0 84-85 34.54343413728296 35.0 35.0 36.0 33.0 37.0 86-87 34.335692328164555 35.0 35.0 36.0 33.0 37.0 88-89 34.18354706701175 35.0 35.0 35.5 32.5 36.5 90-91 34.03099175716146 35.0 35.0 35.0 32.0 36.0 92-93 33.92552140102838 35.0 35.0 35.0 32.0 36.0 94-95 33.8167272955625 35.0 35.0 35.0 32.0 36.0 96-97 33.76675742311494 35.0 34.5 35.0 32.0 36.0 98-99 33.740096781958755 35.0 34.0 35.0 32.0 35.0 100-101 32.92641812557284 34.5 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 3.0 13 3.0 14 18.0 15 54.0 16 131.0 17 282.0 18 459.0 19 718.0 20 1022.0 21 1361.0 22 1937.0 23 2144.0 24 2390.0 25 3439.0 26 4602.0 27 6944.0 28 9395.0 29 10092.0 30 9633.0 31 9928.0 32 11767.0 33 15815.0 34 27541.0 35 59751.0 36 178617.0 37 358266.0 38 433823.0 39 187494.0 40 15.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.07604293114431 20.93974976863815 13.62728807855486 24.356919221662682 2 15.246186210701488 21.396841914826496 38.87672822256412 24.480243651907905 3 17.893523398567336 29.527393645254424 29.244583395008846 23.334499561169398 4 12.55332128231236 18.3951508844642 40.40127208543964 28.650255747783792 5 13.200727247717259 38.907528598747355 35.29999715918861 12.591746994346787 6 27.38407620551327 38.583451825071805 20.73665229814166 13.295819671273268 7 24.963630138317612 31.533305523284934 25.367399147457547 18.135665190939903 8 25.05296618088792 34.441025503010515 22.144872410189244 18.361135905912327 9 26.50342467289552 15.692941181747639 21.498662575898255 36.30497156945859 10-11 25.532091450204312 25.421673596751308 28.380939351667035 20.665295601377345 12-13 25.987555750923637 23.706795370374522 28.380789835277792 21.924859043424043 14-15 23.500088962251596 25.365343297105515 25.543678970370337 25.590888770272553 16-17 22.900490862305872 27.572915405122135 26.902857706747525 22.62373602582447 18-19 22.725108137728515 27.12092736045262 27.578671786107833 22.575292715711033 20-21 23.893972689889967 25.946286603273762 26.755736704254108 23.404004002582166 22-23 24.177050719632064 26.601267317968823 26.083186057708126 23.138495904690988 24-25 23.868766229567147 26.387561409299266 26.310485566595286 23.433186794538305 26-27 23.314208476514327 27.41565482106752 26.858019898872133 22.412116803546017 28-29 23.157428859577706 27.044798860048697 27.185685417400258 22.61208686297334 30-31 23.33864118895966 26.31335785413116 27.18810741305583 23.159893543853354 32-33 23.386885160113483 26.460458492350362 27.451379102826234 22.70127724470992 34-35 24.051395189578916 26.25830220784153 26.692289749670305 22.99801285290925 36-37 22.88827818426351 26.36808593192222 27.310396025170135 23.433239858644143 38-39 23.04380232139146 26.521179744117653 26.72026081638939 23.714757118101502 40-41 23.283514472438895 26.303670776872206 27.48025262289126 22.932562127797638 42-43 23.46984927252801 26.54491547090934 27.355593333363238 22.62964192319941 44-45 23.37464940156684 26.04411325464876 27.097170203833993 23.484067139950408 46-47 23.47162691034946 25.92868028678716 26.653354291968956 23.946338510894424 48-49 22.917600374093503 26.036653537759037 27.131422770138457 23.914323318009007 50-51 23.07516338403434 26.36059914207496 26.869552931044538 23.694684542846165 52-53 23.399257650572462 26.327725218574432 26.56754968620224 23.70546744465086 54-55 23.38492396344025 25.909657712130112 26.808139074164615 23.89727925026502 56-57 23.607771129173287 26.309745387149025 26.38589261409281 23.69659086958488 58-59 23.78032044143526 26.18819334182439 26.890612694853687 23.14087352188666 60-61 23.373310176053902 26.76524089864702 26.615192197317967 23.24625672798111 62-63 22.802333352770464 26.39472625791876 27.309280631796458 23.493659757514322 64-65 23.60661938958439 26.350432027606708 26.28094428570788 23.76200429710103 66-67 23.095385475678917 26.71528939644719 26.168433202805524 24.020891925068366 68-69 23.29633550281614 26.661500875418458 26.989203421533052 23.05296020023235 70-71 23.888943711564945 26.2139609433288 26.708299505250267 23.188795839855985 72-73 23.301830230120675 26.50925581207584 26.894970717215166 23.293943240588316 74-75 23.375728705502052 26.043512259596334 26.844322040360453 23.736436994541158 76-77 23.196976470535464 25.670171839700007 26.713089152404006 24.41976253736052 78-79 23.509500290832857 25.518377795621504 26.639803878469248 24.332318035076387 80-81 22.613405703648045 26.606146243360136 26.682441600968925 24.098006452022894 82-83 22.818521258299658 26.742886021214378 26.827662796265482 23.61092992422048 84-85 23.206281672735347 25.729409754968863 27.139205094476658 23.925103477819132 86-87 22.669525420028915 26.904053837861436 27.01095805616733 23.41546268594232 88-89 23.32362224385226 25.935486668371155 26.271861165061612 24.469029922714977 90-91 23.262993348015844 25.995442740455992 26.42941406022221 24.31214985130595 92-93 23.378391360042702 25.976426489679067 26.900213845895642 23.74496830438259 94-95 23.24243484449548 25.53429681694559 26.56951091693916 24.653757421619773 96-97 23.634803228955942 26.266553333243625 26.66964951863198 23.42899391916845 98-99 22.011204758209573 26.478492814989913 27.2178513597768 24.292451067023713 100-101 22.947467327687427 25.995935575163244 26.755855094614017 24.30074200253531 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1.0 1 1.0 2 1.5 3 3.5 4 3.5 5 2.5 6 7.5 7 14.0 8 15.0 9 18.0 10 22.5 11 25.5 12 27.0 13 25.0 14 29.5 15 35.0 16 37.0 17 42.5 18 53.5 19 62.5 20 77.0 21 96.5 22 108.5 23 143.5 24 197.0 25 256.0 26 372.0 27 507.0 28 638.5 29 974.5 30 1893.0 31 4050.0 32 8323.0 33 15191.5 34 24174.0 35 35429.0 36 50575.5 37 62194.0 38 64567.0 39 62244.0 40 55850.0 41 48860.0 42 44355.5 43 40667.0 44 38857.5 45 38750.5 46 38863.5 47 38998.5 48 40490.5 49 46203.0 50 52945.5 51 52935.0 52 49630.5 53 49794.0 54 53896.0 55 55150.5 56 46046.0 57 37883.0 58 36519.5 59 36261.0 60 30181.5 61 21281.0 62 16721.0 63 11749.5 64 6827.5 65 4141.5 66 3162.0 67 2702.0 68 2009.0 69 1258.0 70 717.5 71 407.5 72 295.0 73 241.5 74 187.5 75 133.0 76 84.5 77 53.0 78 41.0 79 25.0 80 11.5 81 7.5 82 5.0 83 4.0 84 1.0 85 0.0 86 0.0 87 1.0 88 1.5 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4783029291755816 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 7.102028488852806E-4 22-23 0.0013456475031510579 24-25 1.8689548654875803E-4 26-27 0.002429641325133855 28-29 0.003364118757877645 30-31 4.485491677170193E-4 32-33 7.475819461950322E-5 34-35 0.003737909730975161 36-37 0.002167987643965593 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.008335538700074608 46-47 0.07812231337738086 48-49 9.344774327437902E-4 50-51 0.0 52-53 7.475819461950322E-5 54-55 0.0 56-57 0.007886989532357589 58-59 0.04134128162458528 60-61 0.03091251347516458 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 2.9903277847801287E-4 78-79 0.008073885018906348 80-81 0.006055413764179761 82-83 0.0011587520166022997 84-85 0.0030277068820898805 86-87 0.0 88-89 0.0 90-91 0.0 92-93 3.737909730975161E-5 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06918870912035023 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1337646.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.39764158528577 #Duplication Level Percentage of deduplicated Percentage of total 1 66.70315218742537 23.611342737392537 2 16.313989131809905 11.549534802281086 3 6.648135460112192 7.059849486824407 4 3.30849465113135 4.684516313903304 5 1.8634542263629288 3.2980942407690463 6 1.1522539687077535 2.4472243799724085 7 0.7750434637722341 1.9204297520539568 8 0.5665288114693167 1.604302705290304 9 0.37702075298748333 1.201108093601894 >10 1.894607968772833 12.040564811359783 >50 0.16857152937141312 4.191778549665665 >100 0.1922838737919954 14.502950425145736 >500 0.026923981012974833 6.50382215138487 >1k 0.009539993272313916 5.384481550355001 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGT 2967 0.22180756343606603 No Hit GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 2917 0.21806965370509088 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 2695 0.20147333449956117 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 2424 0.18121386375767579 No Hit CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG 2364 0.1767283720805056 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 2345 0.17530796638273505 No Hit TCATTTAGGTGAGAAAACCCTCTCTACTTTGGCGCGACTGCGTGAACGCG 2108 0.15759027425791278 No Hit GTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCC 2064 0.15430091369465465 No Hit ACTTAATACTTCAGTACTTCTAGCATCAGGTGTTTCAATTACATGAGCTC 1981 0.14809598354123588 No Hit TAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCATCGCA 1883 0.14076968046852456 No Hit ATATACACCAGATTCAGACAGCCAATCACCCGTTGTTCACTGCGCAGCGG 1864 0.139349274770754 No Hit GAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCAT 1788 0.13366765197967176 No Hit ATCTTACACGCTTGCAGATCCAGCTATACGAAGCATTAGGCGAGCGTGCA 1783 0.13329386100657423 No Hit GCATATTCTCGGGGCGCTATCGCTGGATGCGTATTTGATTACCGGCAACG 1780 0.13306958642271574 No Hit GTATCAGCAATGGGATACCCGAGCCAGCATGCATATCTTCAATGACGACG 1776 0.1327705536442377 No Hit CTTTTACATCGTGATGATTTACCTGCGGATGTCGCGGAGCTGGTGCTGTA 1758 0.13142490614108665 No Hit TCCTTTCACCGGGCAATGGTCGGGCGACGTTTGCCGCTTCTGAAAACCGC 1753 0.13105111516798915 No Hit GTCTATAGCGGTTTTCGTTATCAGATAATCGATGTCAAAAAAATGCCACT 1683 0.1258180415446239 No Hit ACATTACCCTCACTTTTGCCACGGGGCGTCATGCGCTGGAGATGCAGCAT 1661 0.12417336126299483 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 1619 0.12103351708897571 No Hit GTATCAACGCAGAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCG 1609 0.12028593514278067 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 1608 0.12021117694816118 No Hit GACTAACATTTCGCGATCGTTCATCGCATCACCAAAGGCCGTGCAATCGC 1493 0.1116139845669183 No Hit GCTATAGACAAATGCCTGCAACAACGCAGGGATCTCTTTCCCGGTAAACC 1461 0.10922172233909419 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 1.4951638923900643E-4 0.0 16-17 0.0 0.0 0.0 1.4951638923900643E-4 0.0 18-19 0.0 0.0 0.0 2.9903277847801287E-4 0.0 20-21 0.0 0.0 0.0 4.8592826502677093E-4 0.0 22-23 0.0 0.0 0.0 5.606864596462741E-4 0.0 24-25 0.0 0.0 0.0 7.475819461950321E-4 0.0 26-27 0.0 0.0 0.0 0.0010092356273632935 0.0 28-29 0.0 0.0 0.0 0.0016073011843193191 0.0 30-31 0.0 0.0 0.0 0.0053825900126042315 0.0 32-33 0.0 0.0 0.0 0.015512325383546917 0.0 34-35 0.0 0.0 0.0 0.028221218468862466 0.0 36-37 0.0 0.0 0.0 0.051134605119740204 0.0 38-39 0.0 0.0 0.0 0.09927888245470026 0.0 40-41 0.0 0.0 0.0 0.16573891747143865 0.0 42-43 0.0 0.0 0.0 0.2303299976226894 0.0 44-45 0.0 0.0 0.0 0.3004531841757834 0.0 46-47 0.0 0.0 0.0 0.3806687270025104 0.0 48-49 0.0 0.0 0.0 0.4698926322808875 0.0 50-51 0.0 0.0 0.0 0.5693584102221365 0.0 52-53 0.0 0.0 0.0 0.666955233297898 0.0 54-55 0.0 0.0 0.0 0.7666079067256957 0.0 56-57 0.0 0.0 0.0 0.8811374608827747 0.0 58-59 0.0 0.0 0.0 1.0131604325808174 0.0 60-61 0.0 0.0 0.0 1.1598733895215925 0.0 62-63 0.0 0.0 0.0 1.3124174856426887 0.0 64-65 0.0 0.0 0.0 1.4595042335565613 0.0 66-67 0.0 0.0 0.0 1.6272616222827265 0.0 68-69 0.0 0.0 0.0 1.8242868442024274 0.0 70-71 0.0 0.0 0.0 2.0527478869596294 0.0 72-73 0.0 0.0 0.0 2.298777105452414 7.475819461950322E-5 74-75 0.0 0.0 0.0 2.5245842323006236 7.475819461950322E-5 76-77 0.0 0.0 0.0 2.767548364814009 7.475819461950322E-5 78-79 0.0 0.0 0.0 3.0488634511671995 7.475819461950322E-5 80-81 0.0 0.0 0.0 3.3680809421924787 7.475819461950322E-5 82-83 0.0 0.0 0.0 3.7191828032229752 7.475819461950322E-5 84-85 0.0 0.0 0.0 4.070172526961543 7.475819461950322E-5 86-87 0.0 0.0 0.0 4.435777477748223 7.475819461950322E-5 88-89 0.0 0.0 0.0 4.835360027989468 7.475819461950322E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGTAAT 25 0.004939736 57.236767 1 GGTATCA 835 0.0 54.837616 1 GTATCAA 1875 0.0 46.043797 1 ACCGTGC 230 0.0 41.29297 8 CCGTGCG 190 0.0 39.988983 9 AACCGTG 245 0.0 36.826588 7 AAACCGT 230 0.0 35.099026 6 ATCAACG 2670 0.0 32.191505 3 TCAACGC 2710 0.0 31.365898 4 GTACATG 5845 0.0 28.398054 1 CGCAGAG 3140 0.0 27.373032 8 ACGCAGA 3155 0.0 26.941862 7 ACATGGG 6040 0.0 26.259321 3 AATGCGG 410 0.0 25.480783 7 AAATGCG 410 0.0 25.480783 6 CATGGGG 4855 0.0 24.648205 4 TACATGG 6600 0.0 24.534906 2 GTGCGCG 165 0.0 24.462957 10-11 ATGCGGG 415 0.0 24.029522 8 TAATACT 1085 0.0 23.63404 4 >>END_MODULE