##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224534_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 920483 Sequences flagged as poor quality 0 Sequence length 101 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.15240694287673 34.0 33.0 34.0 31.0 34.0 2 33.277534729049854 34.0 34.0 34.0 31.0 34.0 3 33.395784604387046 34.0 34.0 34.0 31.0 34.0 4 36.61837752571204 37.0 37.0 37.0 35.0 37.0 5 36.64611405099279 37.0 37.0 37.0 35.0 37.0 6 36.68377362754119 37.0 37.0 37.0 36.0 37.0 7 36.66045326203743 37.0 37.0 37.0 35.0 37.0 8 36.6471233037438 37.0 37.0 37.0 35.0 37.0 9 38.48848810896019 39.0 39.0 39.0 37.0 39.0 10-11 38.50905285594628 39.0 39.0 39.0 37.0 39.0 12-13 38.48233318811971 39.0 39.0 39.0 37.0 39.0 14-15 40.05985064362949 41.0 40.0 41.0 38.0 41.0 16-17 40.06435751665158 41.0 40.0 41.0 38.0 41.0 18-19 40.053072680321094 41.0 40.0 41.0 38.0 41.0 20-21 40.04707202631662 41.0 40.0 41.0 38.0 41.0 22-23 39.97268173339431 41.0 40.0 41.0 38.0 41.0 24-25 39.92055094988174 41.0 40.0 41.0 38.0 41.0 26-27 39.83223318627286 41.0 40.0 41.0 38.0 41.0 28-29 39.81004048961252 41.0 40.0 41.0 37.5 41.0 30-31 39.73849815803225 41.0 40.0 41.0 37.0 41.0 32-33 39.685987139360535 41.0 40.0 41.0 37.0 41.0 34-35 39.59683611756002 41.0 40.0 41.0 36.5 41.0 36-37 39.45484816123709 41.0 39.5 41.0 36.0 41.0 38-39 39.31104648320502 41.0 39.0 41.0 35.5 41.0 40-41 39.151324902252405 41.0 39.0 41.0 35.0 41.0 42-43 39.01500082022156 41.0 39.0 41.0 35.0 41.0 44-45 38.71532499785439 40.0 38.0 41.0 35.0 41.0 46-47 38.444954442396 40.0 37.5 41.0 35.0 41.0 48-49 38.28705092869721 40.0 37.0 41.0 35.0 41.0 50-51 38.05812057365536 40.0 36.5 41.0 34.5 41.0 52-53 37.73997998876677 39.5 36.0 41.0 34.0 41.0 54-55 37.48901174709364 39.0 35.0 41.0 34.0 41.0 56-57 37.18756620165718 38.5 35.0 41.0 34.0 41.0 58-59 36.85931787985221 37.5 35.0 41.0 33.0 41.0 60-61 36.55695216533059 37.0 35.0 40.0 33.0 41.0 62-63 36.318635433788565 36.0 35.0 40.0 33.0 41.0 64-65 36.024192733597474 36.0 35.0 39.5 33.0 41.0 66-67 35.73949057179763 35.0 35.0 39.0 32.0 41.0 68-69 35.467435574584215 35.0 35.0 39.0 32.0 41.0 70-71 35.194025310624966 35.0 35.0 38.5 32.0 40.5 72-73 34.918035422707426 35.0 35.0 37.0 32.0 40.0 74-75 34.642544729234544 35.0 35.0 37.0 31.0 39.0 76-77 32.892678083136786 34.5 32.0 35.0 28.5 38.0 78-79 34.25013987221926 35.0 34.0 36.0 31.5 38.5 80-81 34.24221794427491 35.0 35.0 36.0 32.0 37.0 82-83 34.08934983046944 35.0 35.0 35.0 32.0 37.0 84-85 33.945396601566785 35.0 35.0 35.0 32.0 36.5 86-87 33.80775147395444 35.0 34.5 35.0 31.0 36.0 88-89 33.70317648451954 35.0 34.0 35.0 31.0 36.0 90-91 33.582310048094314 35.0 34.0 35.0 31.0 36.0 92-93 33.504233646900595 35.0 34.0 35.0 31.0 35.5 94-95 33.42172967887511 35.0 34.0 35.0 31.0 35.0 96-97 33.392856793661586 35.0 34.0 35.0 31.0 35.0 98-99 33.37955616779452 35.0 34.0 35.0 31.0 35.0 100-101 32.480753039436905 34.5 32.5 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 6.0 14 22.0 15 54.0 16 144.0 17 325.0 18 544.0 19 919.0 20 1260.0 21 1877.0 22 2543.0 23 2516.0 24 2341.0 25 2853.0 26 3811.0 27 5220.0 28 6787.0 29 7557.0 30 7988.0 31 8707.0 32 10515.0 33 14136.0 34 25812.0 35 54994.0 36 158501.0 37 300142.0 38 244236.0 39 56661.0 40 10.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.989713000911365 18.01671023406334 12.874520440294477 24.11905632473082 2 16.635070935584906 19.27509796487279 37.89228046579893 26.197550633743372 3 20.233399204548046 26.25186994219339 27.631037183739405 25.883693669519154 4 13.504323273759535 16.33403332815489 38.106189902475116 32.05545349561046 5 14.26587997822882 37.912921803009944 33.80670800003911 14.014490218722129 6 30.492252437035773 35.614563223872686 19.38319338868833 14.509990950403212 7 27.98324357972934 30.257701663148584 21.790625139193228 19.968429617928848 8 27.385731186779118 32.474364002377015 19.849578971040206 20.290325839803668 9 27.837885110317085 14.751929150239604 19.407962993341542 38.00222274610178 10-11 27.71990357236364 23.548723876486584 26.50108692936208 22.230285621787694 12-13 27.98595954515184 22.028054836428264 26.550300222817803 23.43568539560209 14-15 24.891823097221785 23.91244596586792 24.04704921220707 27.148681724703227 16-17 24.378777228911343 26.228404000942984 25.193240939810945 24.199577830334725 18-19 24.45797478063147 25.6009616690368 26.188750905774466 23.75231264455726 20-21 25.770688209143966 23.926262064410153 25.795295042999495 24.50775468344639 22-23 26.096436550655344 24.67243654196414 24.833712758855388 24.39741414852513 24-25 25.549522477921872 24.281544105744715 25.266518265993543 24.902415150339877 26-27 24.85071396017989 25.75867944934324 25.535585565765977 23.855021024710894 28-29 24.75275653512579 25.608154281225794 25.971889805953396 23.667199377695017 30-31 24.623753222527984 24.415436411497133 26.155954601601568 24.80485576437332 32-33 24.80977357514867 24.877564145741037 26.36825054699603 23.94441173211426 34-35 25.692866113605056 24.282635053212985 25.272909396687716 24.751589436494246 36-37 24.295124907044215 24.478184655681996 26.27075786192732 24.955932575346466 38-39 24.680140752192056 24.864391846454524 25.186885580722297 25.268581820631127 40-41 25.031097804087636 24.755155717161532 25.751969346527854 24.461777132222977 42-43 24.974334126757366 24.855211883326472 26.005423239755647 24.16503075016051 44-45 25.21158910753398 24.255554010360534 25.7195116121406 24.813345269964884 46-47 24.858731264055525 24.261094522170563 25.326283894304076 25.553890319469836 48-49 24.495287759037453 24.221461745294548 26.09728672696162 25.185963768706376 50-51 24.98449183743752 24.60501714860568 25.352722429420204 25.057768584536593 52-53 25.281537281554662 24.87055694733846 24.635788641168432 25.212117129938445 54-55 25.294437811453335 23.881158044200706 25.262715335318525 25.561688809027434 56-57 25.4530718053827 24.628875236782676 24.70107120565095 25.21698175218367 58-59 25.716658071787258 24.656526339184552 25.245905024499482 24.38091056452871 60-61 25.091406610400004 25.209804591711706 24.87297619054088 24.825812607347412 62-63 24.796709988125798 24.452814446328723 25.648654021855915 25.10182154368956 64-65 25.31171135154044 24.276168055249254 25.050272519970495 25.361848073239813 66-67 24.743205469302527 24.460093233661024 24.930498444838197 25.86620285219825 68-69 25.193729813586994 24.58328942522567 25.537625355384076 24.685355405803257 70-71 25.757509915989758 24.277580357268956 25.254458800434122 24.710450926307168 72-73 24.998777815559876 24.540377171550155 25.560982658017583 24.899862354872386 74-75 25.074335973613852 24.215982261486634 25.68624298330333 25.023438781596184 76-77 25.128614891896135 23.535262289641118 25.29651633032965 26.0396064881331 78-79 25.088465721366386 23.53351158664643 25.230684486203476 26.14733820578371 80-81 24.55065814383394 24.768273941676142 25.258968774903458 25.422099139586464 82-83 24.472582090768352 24.763410195822807 25.6522990847117 25.111708628697137 84-85 24.795021635850652 24.093200921710054 25.90392009238829 25.207857350051004 86-87 24.549502815369756 25.349137355062506 25.218064863772604 24.88329496579513 88-89 25.14734112417068 24.163183893673214 24.517400104075797 26.172074878080316 90-91 25.0809086099363 24.37215027328044 24.790789183504746 25.75615193327851 92-93 25.084724587376726 24.564942842476636 25.340405711135194 25.009926859011443 94-95 25.125830678024474 24.10017349587119 25.107090516609215 25.666905309495124 96-97 25.320076525041745 24.813440335128405 25.25565382522002 24.61082931460983 98-99 23.271532445466132 25.422142505619334 25.792382912014673 25.513942136899864 100-101 24.60590406024405 24.57345341702012 25.18104686753452 25.639595655201315 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4.0 1 2.5 2 3.0 3 5.0 4 3.5 5 5.5 6 6.5 7 20.0 8 40.5 9 47.0 10 47.0 11 46.0 12 47.0 13 54.5 14 67.5 15 74.5 16 74.5 17 89.0 18 105.5 19 120.0 20 145.5 21 184.5 22 221.0 23 268.5 24 377.5 25 541.5 26 752.5 27 999.0 28 1264.5 29 1740.0 30 2631.0 31 3840.0 32 5366.5 33 7069.0 34 8692.5 35 10608.0 36 13143.5 37 15105.5 38 15988.0 39 16843.0 40 17560.0 41 17937.0 42 18760.5 43 20415.0 44 22596.0 45 25723.5 46 29381.5 47 32166.5 48 35121.5 49 41111.5 50 48472.5 51 49006.5 52 45538.0 53 47274.5 54 51787.5 55 51681.5 56 43877.5 57 37593.0 58 36572.0 59 35601.0 60 29865.0 61 22120.5 62 17710.5 63 12388.0 64 7179.0 65 4522.0 66 3403.5 67 2811.0 68 2029.0 69 1294.0 70 749.0 71 475.0 72 340.5 73 228.0 74 162.0 75 126.0 76 97.5 77 66.0 78 37.5 79 22.0 80 9.5 81 8.0 82 6.5 83 5.0 84 3.5 85 1.0 86 0.5 87 1.0 88 0.5 89 0.0 90 0.0 91 0.0 92 0.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.46475600309837334 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 7.604703183002837E-4 22-23 0.0013579827112505064 24-25 2.1727723380008106E-4 26-27 0.00200981441265075 28-29 0.003693712974601378 30-31 0.0010863861690004052 32-33 1.0863861690004053E-4 34-35 0.0033677971239012565 36-37 0.00200981441265075 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.007278787332302716 46-47 0.0753408808201781 48-49 8.691089352003242E-4 50-51 0.0 52-53 1.0863861690004053E-4 54-55 0.0 56-57 0.007767661108352897 58-59 0.03927286000936465 60-61 0.030581770657361406 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 2.715965422501013E-4 78-79 0.007604703183002837 80-81 0.005812166004152168 82-83 8.691089352003242E-4 84-85 0.0021727723380008104 86-87 0.0 88-89 0.0 90-91 0.0 92-93 5.4319308450020265E-5 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0678448162540753 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 920483.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.81164294785591 #Duplication Level Percentage of deduplicated Percentage of total 1 71.33702916976637 29.82718392607053 2 15.622748787812025 13.0642558836009 3 5.610640027121561 7.03770232568866 4 2.5753136082605854 4.307123722693842 5 1.3650146334659201 2.853675223653773 6 0.8556061080730373 2.1464578256852667 7 0.5129675677893413 1.5013611751766607 8 0.35629225314016866 1.191773157870706 9 0.2622857360915338 0.9869937792997299 >10 1.1961943836367195 9.189796098377883 >50 0.1307324827209084 3.8694347323529126 >100 0.14814523443706895 13.613537989756963 >500 0.018713082243314763 5.192257332949693 >1k 0.008316925441473227 5.218446826822462 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 2640 0.286805948616107 No Hit GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 2269 0.24650102174619193 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 2125 0.23085706091258612 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 2022 0.21966728337188193 No Hit GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 2012 0.2185808972028815 No Hit CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG 1997 0.2169513179493809 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 1930 0.20967253061707822 No Hit ATATACACCAGATTCAGACAGCCAATCACCCGTTGTTCACTGCGCAGCGG 1843 0.20022097094677468 No Hit TCATTTAGGTGAGAAAACCCTCTCTACTTTGGCGCGACTGCGTGAACGCG 1828 0.19859139169327408 No Hit GTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCC 1753 0.19044349542577105 No Hit TCCTTTCACCGGGCAATGGTCGGGCGACGTTTGCCGCTTCTGAAAACCGC 1625 0.17653775246256584 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 1592 0.1729526781048645 No Hit GTATCAACGCAGAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCG 1572 0.17077990576686372 No Hit ACATTACCCTCACTTTTGCCACGGGGCGTCATGCGCTGGAGATGCAGCAT 1479 0.16067651439515993 No Hit GAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCAT 1442 0.15665688556985843 No Hit CTTTTACATCGTGATGATTTACCTGCGGATGTCGCGGAGCTGGTGCTGTA 1367 0.1485089893023554 No Hit ATCTTACACGCTTGCAGATCCAGCTATACGAAGCATTAGGCGAGCGTGCA 1321 0.14351161292495354 No Hit GTATCAGCAATGGGATACCCGAGCCAGCATGCATATCTTCAATGACGACG 1310 0.14231658813905307 No Hit GCATATTCTCGGGGCGCTATCGCTGGATGCGTATTTGATTACCGGCAACG 1295 0.14068700888555247 No Hit ATACAAAACCGTGCGCGGCTTAACCCGCGGTCTAATGTTATTAAATATGT 1226 0.13319094431944967 No Hit GAGTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCG 1212 0.13167000368284912 No Hit GTATCAACGCAGAGTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTAC 1208 0.13123544921524896 No Hit GGATGGCACTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCT 1142 0.12406530049984628 No Hit GACTAACATTTCGCGATCGTTCATCGCATCACCAAAGGCCGTGCAATCGC 1138 0.12363074603224612 No Hit GTCTATAGCGGTTTTCGTTATCAGATAATCGATGTCAAAAAAATGCCACT 1126 0.12232708262944562 No Hit GTGAAAGGATAAGCGGCTGAAACGGTGAGTGGTTTCGCGTACCACCATTG 1124 0.12210980539564555 No Hit TAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCATCGCA 1118 0.1214579736942453 No Hit GTTTTCGACTGACCATCAAAGTGCGGCAATTAAGCGAAGGATTTCGTGAC 1114 0.12102341922664514 No Hit GGTCAGGCCCGAGGCGGTTTTCAGAAGCGGCAAACGTCGCCCGACCATTG 1102 0.11971975582384464 No Hit GGCCTGACCTGGCTGGCCTTTTGCCCGGAACAAGACCGCAAGGAATTAAT 1078 0.11711242901824369 No Hit GATTCAGACAGCCAATCACCCGTTGTTCACTGCGCAGCGGTACGGCGATA 1010 0.10972500306904093 No Hit GCATTAGGCGAGCGTGCACATTTGTGTTTTTCCGCCACGGATTGCCTCGA 1001 0.10874725551694056 No Hit GTTCAATGGTCATTGCGCTCGCCATATACACCAGATTCAGACAGCCAATC 937 0.10179438403533797 No Hit ACTTTGGCGCGACTGCGTGAACGCGACATTACCCTCACTTTTGCCACGGG 929 0.10092527510013766 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 5.431930845002026E-5 0.0 16-17 0.0 0.0 0.0 1.0863861690004052E-4 0.0 18-19 0.0 0.0 0.0 2.715965422501013E-4 0.0 20-21 0.0 0.0 0.0 6.518317014002431E-4 0.0 22-23 0.0 0.0 0.0 7.604703183002837E-4 0.0 24-25 0.0 0.0 0.0 0.001032066860550385 0.0 26-27 0.0 0.0 0.0 0.0014123020197005268 0.0 28-29 0.0 0.0 0.0 0.0017382178704006485 0.0 30-31 0.0 0.0 0.0 0.0038566708999514384 0.0 32-33 0.0 0.0 0.0 0.009940433446353708 0.0 34-35 0.0 0.0 0.0 0.018142649022306768 0.0 36-37 0.0 0.0 0.0 0.030473132040461363 0.0 38-39 0.0 0.0 0.0 0.053993392599320136 0.0 40-41 0.0 0.0 0.0 0.08185919783418052 0.0 42-43 0.0 0.0 0.0 0.10575969355218945 0.0 44-45 0.0 0.0 0.0 0.1348748428814003 0.0 46-47 0.0 0.0 0.0 0.16665163832466218 0.0 48-49 0.0 0.0 0.0 0.2048381121650264 0.0 50-51 0.0 0.0 0.0 0.24622942520394184 0.0 52-53 0.0 0.0 0.0 0.2897935105808581 0.0 54-55 0.0 0.0 0.0 0.3356390069126752 0.0 56-57 0.0 0.0 0.0 0.38968671882044537 0.0 58-59 0.0 0.0 0.0 0.44351715349441545 0.0 60-61 0.0 0.0 0.0 0.5110360538977906 0.0 62-63 0.0 0.0 0.0 0.5831720955194175 0.0 64-65 0.0 5.431930845002026E-5 0.0 0.6504193993805426 0.0 66-67 0.0 1.0863861690004052E-4 0.0 0.7335822606175236 0.0 68-69 0.0 1.0863861690004052E-4 0.0 0.8326063599219106 0.0 70-71 0.0 1.0863861690004052E-4 0.0 0.941027699588151 0.0 72-73 0.0 1.0863861690004052E-4 0.0 1.0581401286063947 0.0 74-75 0.0 1.0863861690004052E-4 0.0 1.1749266417739381 0.0 76-77 0.0 1.0863861690004052E-4 0.0 1.2886169543598307 0.0 78-79 0.0 2.1727723380008106E-4 0.0 1.4225140496891306 0.0 80-81 0.0 3.259158507001216E-4 0.0 1.5836794378603407 0.0 82-83 0.0 3.259158507001216E-4 0.0 1.7578814600595556 0.0 84-85 0.0 3.259158507001216E-4 0.0 1.9361031110840723 0.0 86-87 0.0 3.259158507001216E-4 0.0 2.131598302195695 0.0 88-89 0.0 3.259158507001216E-4 0.0 2.342520176907124 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 835 0.0 63.39766 1 GTATCAA 1930 0.0 53.868626 1 CCGTGCG 290 0.0 42.578636 9 AACCGTG 290 0.0 40.940998 7 AAACCGT 300 0.0 39.576294 6 ATCAACG 2700 0.0 38.169136 3 GTCTAAT 600 0.0 38.15283 1 ACCGTGC 370 0.0 35.939556 8 TCAACGC 2915 0.0 35.353916 4 CTAATGT 680 0.0 32.825047 3 TCTAATG 740 0.0 32.08889 2 CGCAGAG 3235 0.0 31.563166 8 ACGCAGA 3365 0.0 30.626053 7 CAACGCA 3405 0.0 30.266275 5 TATCAAC 3530 0.0 29.598135 2 AACGCAG 3495 0.0 29.486887 6 TCGCTAA 65 0.0058485563 29.22557 9 TAATGTT 785 0.0 29.039421 4 GTTATTA 815 0.0 27.387768 8 CTCGCTA 70 0.008397997 27.138031 8 >>END_MODULE