##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224520_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1094292 Sequences flagged as poor quality 0 Sequence length 101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.29440222536581 34.0 31.0 34.0 31.0 34.0 2 32.4543650140913 34.0 31.0 34.0 31.0 34.0 3 32.59467034393014 34.0 31.0 34.0 31.0 34.0 4 35.87548935750239 37.0 37.0 37.0 35.0 37.0 5 35.89164318116188 37.0 37.0 37.0 35.0 37.0 6 35.990913759764304 37.0 37.0 37.0 35.0 37.0 7 35.94368596316157 37.0 37.0 37.0 35.0 37.0 8 35.979198422358934 37.0 37.0 37.0 35.0 37.0 9 37.718116371133114 39.0 39.0 39.0 35.0 39.0 10-11 37.78448485413399 39.0 39.0 39.0 36.0 39.0 12-13 37.78845545795821 39.0 39.0 39.0 35.0 39.0 14-15 39.303402108395204 41.0 40.0 41.0 37.0 41.0 16-17 39.137880474315814 41.0 40.0 41.0 36.5 41.0 18-19 39.22593375442752 41.0 40.0 41.0 36.5 41.0 20-21 39.28681604178775 41.0 40.0 41.0 37.0 41.0 22-23 39.24375532307647 41.0 40.0 41.0 36.5 41.0 24-25 39.18717307629042 41.0 40.0 41.0 36.0 41.0 26-27 39.02760277878299 41.0 39.5 41.0 35.5 41.0 28-29 38.95262644705435 41.0 39.0 41.0 35.0 41.0 30-31 38.862279903353034 41.0 39.0 41.0 35.0 41.0 32-33 38.669472590496866 41.0 39.0 41.0 35.0 41.0 34-35 38.66646973568298 41.0 39.0 41.0 35.0 41.0 36-37 38.66147563904333 41.0 39.0 41.0 35.0 41.0 38-39 38.546694118206105 41.0 39.0 41.0 35.0 41.0 40-41 38.45446462187424 40.0 38.0 41.0 35.0 41.0 42-43 38.3073982995398 40.0 38.0 41.0 34.0 41.0 44-45 38.13248794654443 40.0 38.0 41.0 33.5 41.0 46-47 37.95694704886813 40.0 38.0 41.0 33.0 41.0 48-49 37.74954216973167 40.0 37.0 41.0 33.0 41.0 50-51 36.48248228078063 38.5 35.5 40.0 31.0 40.5 52-53 36.80867309639474 39.0 36.0 40.0 31.5 40.5 54-55 37.25367589272334 40.0 36.0 41.0 32.0 41.0 56-57 37.102999930548705 39.5 35.0 41.0 32.0 41.0 58-59 36.95979318134465 39.0 35.0 41.0 32.0 41.0 60-61 36.71428832523678 39.0 35.0 41.0 32.0 41.0 62-63 36.432836025484974 38.5 35.0 41.0 31.0 41.0 64-65 36.18853240268594 37.5 35.0 41.0 31.0 41.0 66-67 35.95100667829062 37.0 35.0 40.0 31.0 41.0 68-69 35.648544903919614 36.5 35.0 40.0 30.0 41.0 70-71 35.36201352107116 36.0 35.0 39.5 30.0 41.0 72-73 35.047289023405085 35.5 35.0 39.0 30.0 41.0 74-75 34.767259104516896 35.0 35.0 39.0 29.0 41.0 76-77 34.43573150493653 35.0 34.0 37.5 29.0 40.0 78-79 34.20005080910762 35.0 34.0 37.0 29.0 39.0 80-81 33.89780972537494 35.0 34.0 37.0 29.0 39.0 82-83 33.62375079046544 35.0 34.0 36.0 29.0 38.5 84-85 33.387020100667826 35.0 34.0 36.0 29.0 37.0 86-87 33.155645385326764 35.0 34.0 35.5 28.0 37.0 88-89 32.99058340918146 35.0 34.0 35.0 27.5 36.5 90-91 32.80797355733205 35.0 34.0 35.0 27.0 36.0 92-93 32.670482832735686 35.0 33.5 35.0 27.0 36.0 94-95 32.52443314947016 35.0 33.0 35.0 27.0 36.0 96-97 32.39685659769056 35.0 33.0 35.0 26.0 35.5 98-99 32.34076462223977 35.0 33.0 35.0 26.0 35.0 100-101 31.180466913767077 34.5 31.0 35.0 22.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 6.0 7 124.0 8 414.0 9 366.0 10 485.0 11 1004.0 12 1754.0 13 1973.0 14 2193.0 15 2157.0 16 2393.0 17 2502.0 18 2984.0 19 3331.0 20 4008.0 21 5078.0 22 6035.0 23 5850.0 24 5543.0 25 5640.0 26 6124.0 27 6422.0 28 7148.0 29 8329.0 30 10042.0 31 12618.0 32 16674.0 33 23433.0 34 37686.0 35 67930.0 36 145321.0 37 264073.0 38 313304.0 39 121296.0 40 52.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.76419653994946 20.15177876030872 13.310752002255082 23.773272697486735 2 15.565315290617129 20.279596305190935 39.526287316365284 24.62880108782665 3 18.050898802784275 27.291784894118464 29.749453754903872 24.907862548193393 4 11.871876976163584 17.22712036641043 40.508566269332135 30.392436388093852 5 12.690031545510704 39.638962909351434 35.11667818096084 12.55432736417702 6 28.6139348546823 39.133521948437895 19.436494098467318 12.81604909841249 7 25.75747606671711 32.25875726040216 24.092015659440076 17.891751013440654 8 25.31975012153977 35.392655707982875 21.29002131058255 17.9975728598948 9 26.362798960423728 14.995723262164029 21.062933842155477 37.57854393525677 10-11 25.231930782643026 25.587137619575028 28.915910926882404 20.265020670899542 12-13 25.520199361779124 23.346876336480573 28.907320897895627 22.225603403844676 14-15 22.8614236729112 25.173527790499644 25.90310782262274 26.061940713966415 16-17 22.73923347076169 27.758210837377163 26.905795355357533 22.596760336503618 18-19 22.717386386331945 27.202656610837682 27.60826872865395 22.471688274176422 20-21 24.072106069311452 25.810125986332245 27.05732805491602 23.060439889440286 22-23 23.923050124311803 26.546582408348048 26.438729687890046 23.091637779450103 24-25 23.186361270409677 26.456753581304422 26.950758121027913 23.40612702725799 26-27 23.08853578386756 27.000745687622686 27.25538521710841 22.655333311401343 28-29 23.000396603465987 27.11163930651051 27.17035306846801 22.717611021555488 30-31 23.04668223837879 26.403647289754474 27.280241471197815 23.269429000668925 32-33 23.116773219579418 26.429600143288994 27.412610162552593 23.041016474578996 34-35 23.517032017048468 26.276396062476927 26.961496565816073 23.245075354658535 36-37 23.053566425960277 26.18933040482272 27.669398206607156 23.08770496260985 38-39 23.052290753367384 26.651843687942485 26.82374271987952 23.472122838810616 40-41 23.55937090324706 26.213095809814252 27.31921053557484 22.90832275136385 42-43 23.457687061774767 26.480056111107302 27.16051751987078 22.90173930724715 44-45 23.39304025487626 26.323093683111885 26.836904050346472 23.446962011665377 46-47 23.480250243993375 26.10203675070274 26.7315762154891 23.686136789814785 48-49 23.027263289871442 26.53816348835594 26.905707069045558 23.52886615272706 50-51 23.11549385356011 26.70685703633034 26.577960909885114 23.599688200224435 52-53 23.56455132633703 26.596877250313444 26.121272932635897 23.71729849071363 54-55 23.27102820819306 26.17957546980148 26.60373099684545 23.94566532516001 56-57 23.434147375654764 26.791249501961083 26.247153410607044 23.527449711777113 58-59 23.80671227061123 26.48075343846095 26.56145679148877 23.15107749943905 60-61 23.574847524611307 26.708716026070483 26.362041876921083 23.354394572397133 62-63 23.241442759852486 26.468543661543116 26.856020632531703 23.433992946072692 64-65 23.88833933374413 26.17154287657682 26.141373213361685 23.79874457631736 66-67 23.25062767280767 26.44026574757271 26.013393399815925 24.295713179803695 68-69 23.336778483256754 26.570741630204736 26.877378250046608 23.215101636491905 70-71 23.70706356255917 25.985157526510292 26.737196287645343 23.570582623285194 72-73 23.532658559141435 26.248752618131178 26.79531605823674 23.423272764490648 74-75 23.468918716393798 26.162075570323097 26.815968681119845 23.553037032163264 76-77 23.39672591959002 25.928545580155937 26.302805832446914 24.37192266780713 78-79 23.563529877353826 25.60726719025192 26.64261696354066 24.186585968853596 80-81 23.288866741945956 26.51281652730855 26.309105288903318 23.88921144184218 82-83 23.183393217952585 26.823418086069285 26.56577708293334 23.42741161304479 84-85 23.185787399667454 26.005062217375524 27.03889534336331 23.770255039593707 86-87 23.10388542279557 27.015458212355327 26.456982116970018 23.423674247879084 88-89 23.413689256000414 26.23247684642425 26.22173590914721 24.132097988428125 90-91 23.126368464724223 26.12360320645678 26.585774180931597 24.1642541478874 92-93 23.224331605535774 26.122078401555747 26.88290942587895 23.77068056702953 94-95 23.481346843438498 25.886417884805883 26.877423941690154 23.75481133006547 96-97 23.414865502078055 26.367505199709036 26.814460856882803 23.403168441330102 98-99 22.579177126293192 26.784837981260857 26.797403240648933 23.838581651797014 100-101 23.318562550167943 26.128653003311314 26.498227323175715 24.05455712334503 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.5 2 1.5 3 2.5 4 4.5 5 6.0 6 9.0 7 15.0 8 21.0 9 35.5 10 45.0 11 48.0 12 64.5 13 75.0 14 80.5 15 90.5 16 98.5 17 112.0 18 129.5 19 155.0 20 202.0 21 255.0 22 327.5 23 443.0 24 611.0 25 874.5 26 1383.5 27 2300.5 28 3936.0 29 6613.5 30 10220.0 31 14624.5 32 19412.0 33 23957.5 34 27721.0 35 30293.5 36 32754.5 37 33530.5 38 32325.5 39 31585.0 40 30264.5 41 28657.5 42 28100.5 43 28770.5 44 30074.5 45 32425.0 46 35588.0 47 36307.5 48 37756.0 49 41928.5 50 45947.5 51 45751.0 52 43637.5 53 44498.0 54 45723.0 55 44514.5 56 37917.0 57 31760.0 58 29284.5 59 26966.0 60 22840.0 61 17770.5 62 14437.5 63 10773.0 64 6922.0 65 4788.5 66 3793.0 67 3101.0 68 2429.5 69 1720.5 70 1231.0 71 936.0 72 714.5 73 613.5 74 517.0 75 381.0 76 277.5 77 207.5 78 150.0 79 105.0 80 65.5 81 50.5 82 46.0 83 30.5 84 22.0 85 23.5 86 20.0 87 14.0 88 10.5 89 12.5 90 9.5 91 5.5 92 4.0 93 3.0 94 4.0 95 4.5 96 6.5 97 4.5 98 3.0 99 5.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.1506910404170002 2 0.0 3 2.741498612801702E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.03426873266002128 16-17 0.06876592353777602 18-19 0.024353646010388454 20-21 0.03687315634218289 22-23 0.061318185639664735 24-25 0.015763617023609785 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.02015001480409251 38-39 0.004112247919202553 40-41 0.005163155720776539 42-43 0.003152723404721957 44-45 0.010417694728646468 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.014758400865582494 60-61 0.016540374963903603 62-63 0.0266382281877232 64-65 0.04368121123064045 66-67 0.0156265420929697 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.015443775518782921 80-81 0.05364198952381997 82-83 0.04770207586274961 84-85 0.027871902563483972 86-87 0.054967047186674126 88-89 0.031664308977859656 90-91 0.0 92-93 0.002558732038614922 94-95 0.0 96-97 0.0 98-99 4.5691643546695034E-4 100-101 0.04258461178551977 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1094292.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.5219599332694 #Duplication Level Percentage of deduplicated Percentage of total 1 74.18643781080225 38.22230676480135 2 14.62656456581576 15.071785470426752 3 4.987637681898742 7.70918606425355 4 2.2280024480818033 4.591642114451873 5 1.1891733578066535 3.0634271047312915 6 0.6883837021791933 2.128012651343523 7 0.4319017500572905 1.557669726309246 8 0.2967568621613793 1.2231596129761069 9 0.20292489267295055 0.9409579370782878 >10 0.9759593285569695 9.040671486658102 >50 0.09063367737054437 3.266915183565064 >100 0.08559594676365861 8.807224866503704 >500 0.007162839880589022 2.2925907893633846 >1k 0.0028651359522356085 2.0844502275378063 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 2086 0.19062553687681166 No Hit GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 2074 0.189528937431691 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 2053 0.1876098884027298 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 1893 0.17298856246778738 No Hit TAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCATCGCA 1727 0.15781893681028464 No Hit GTGTAAGATCGTCGTGATCGCCACAGAAGCAGATCTTGGTGACGCTGCCG 1285 0.11742752391500624 No Hit CCTTTATTGCAGCCCACCGGCAGCACTTCGAGGCAATCCGTGGCGGAAAA 1274 0.11642230775697894 No Hit GTATAGCTGGATCTGCAAGCGTGTAAGATCGTCGTGATCGCCACAGAAGC 1246 0.11386357571836403 No Hit CGCCTAATGCTTCGTATAGCTGGATCTGCAAGCGTGTAAGATCGTCGTGA 1219 0.1113962269668425 No Hit GACTAACATTTCGCGATCGTTCATCGCATCACCAAAGGCCGTGCAATCGC 1186 0.10838057849276062 No Hit GTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCC 1182 0.10801504534438705 No Hit ATACAAAACCGTGCGCGGCTTAACCCGCGGTCTAATGTTATTAAATATGT 1152 0.10527354673158534 No Hit ATGTAAAAGTTCACCTTCCAGAGAATGCACGCGCGTTCCGTTGCCGGTAA 1103 0.10079576566400925 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 4.569164354669503E-5 14-15 0.0 0.0 0.0 0.0 9.138328709339007E-5 16-17 0.0 0.0 0.0 0.0 9.138328709339007E-5 18-19 0.0 0.0 0.0 0.0 9.138328709339007E-5 20-21 0.0 0.0 0.0 9.138328709339007E-5 9.138328709339007E-5 22-23 0.0 0.0 0.0 2.2845821773347514E-4 1.8276657418678013E-4 24-25 0.0 0.0 0.0 6.396830096537304E-4 1.8276657418678013E-4 26-27 0.0 0.0 0.0 0.001233674375760766 1.8276657418678013E-4 28-29 0.0 0.0 0.0 0.0021018156031479716 1.8276657418678013E-4 30-31 0.0 0.0 0.0 0.004157939562749248 2.741498612801702E-4 32-33 0.0 0.0 0.0 0.008909870491605531 3.6553314837356026E-4 34-35 0.0 0.0 0.0 0.01498685908331597 4.5691643546695034E-4 36-37 0.0 0.0 0.0 0.02471917915876201 4.5691643546695034E-4 38-39 0.0 0.0 0.0 0.04400105273546732 4.5691643546695034E-4 40-41 0.0 0.0 0.0 0.06940560654742975 4.5691643546695034E-4 42-43 0.0 0.0 0.0 0.09330233612235125 4.5691643546695034E-4 44-45 0.0 0.0 0.0 0.12099147211164844 5.026080790136453E-4 46-47 0.0 0.0 0.0 0.15105657356537378 5.482997225603404E-4 48-49 0.0 0.0 0.0 0.18569083937376862 5.482997225603404E-4 50-51 0.0 0.0 0.0 0.22402612830944574 5.482997225603404E-4 52-53 0.0 0.0 0.0 0.2637321665515237 5.482997225603404E-4 54-55 0.0 0.0 0.0 0.30554002039674966 5.482997225603404E-4 56-57 0.0 0.0 0.0 0.3525110299627522 5.482997225603404E-4 58-59 0.0 0.0 0.0 0.4090315930300139 5.482997225603404E-4 60-61 0.0 0.0 0.0 0.4719946778373597 5.482997225603404E-4 62-63 0.0 0.0 0.0 0.5413545927412428 5.482997225603404E-4 64-65 0.0 0.0 0.0 0.6054599686372559 5.482997225603404E-4 66-67 0.0 0.0 0.0 0.6798002726877287 5.482997225603404E-4 68-69 0.0 0.0 0.0 0.7726000007310663 5.482997225603404E-4 70-71 0.0 0.0 0.0 0.8685067605355792 5.939913661070354E-4 72-73 0.0 0.0 0.0 0.978806388057301 6.396830096537304E-4 74-75 0.0 0.0 0.0 1.0897913902322234 6.396830096537304E-4 76-77 0.0 0.0 0.0 1.204568798821521 6.396830096537304E-4 78-79 0.0 0.0 0.0 1.3433800119163806 6.396830096537304E-4 80-81 0.0 0.0 0.0 1.500650649004105 6.396830096537304E-4 82-83 0.0 0.0 0.0 1.6739133613331725 6.396830096537304E-4 84-85 0.0 0.0 0.0 1.849277889265388 6.396830096537304E-4 86-87 0.0 0.0 0.0 2.0317246219473413 6.853746532004255E-4 88-89 0.0 0.0 0.0 2.2335903031366398 7.310662967471205E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 900 0.0 51.2482 1 AAACCGT 290 0.0 44.209885 6 CCGTGCG 305 0.0 42.058693 9 GTATCAA 1735 0.0 41.657524 1 AACCGTG 355 0.0 37.452717 7 ACCGTGC 375 0.0 35.45524 8 GTCTAAT 755 0.0 32.749584 1 ATCAACG 2270 0.0 31.168365 3 CTAATGT 805 0.0 30.673342 3 TCAACGC 2410 0.0 29.357756 4 TCTAATG 895 0.0 28.119427 2 CGCAGAG 2695 0.0 26.42933 8 GTACATG 3935 0.0 26.101074 1 GTTATTA 910 0.0 25.568682 8 ACGCAGA 2800 0.0 25.26864 7 TACATGG 4005 0.0 25.13547 2 ATGTTAT 930 0.0 25.018816 6 TATCAAC 2905 0.0 25.009151 2 ACATGGG 4055 0.0 24.474232 3 GTATTAC 265 3.092282E-11 23.326353 1 >>END_MODULE