##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224519_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1090754 Sequences flagged as poor quality 0 Sequence length 101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.3499203303403 34.0 31.0 34.0 31.0 34.0 2 32.51304235418802 34.0 31.0 34.0 31.0 34.0 3 32.651856422254696 34.0 31.0 34.0 31.0 34.0 4 35.9257797816923 37.0 37.0 37.0 35.0 37.0 5 35.950448038696166 37.0 37.0 37.0 35.0 37.0 6 36.04470027155527 37.0 37.0 37.0 35.0 37.0 7 36.006131538367036 37.0 37.0 37.0 35.0 37.0 8 36.03849355583385 37.0 37.0 37.0 35.0 37.0 9 37.79056139147782 39.0 39.0 39.0 35.0 39.0 10-11 37.86182218905455 39.0 39.0 39.0 37.0 39.0 12-13 37.86948798720885 39.0 39.0 39.0 37.0 39.0 14-15 39.40064166622355 41.0 40.0 41.0 37.0 41.0 16-17 39.24519139971066 41.0 40.0 41.0 36.5 41.0 18-19 39.330757897747795 41.0 40.0 41.0 36.5 41.0 20-21 39.398175940679565 41.0 40.0 41.0 37.0 41.0 22-23 39.35340278376242 41.0 40.0 41.0 37.0 41.0 24-25 39.3065388712762 41.0 40.0 41.0 37.0 41.0 26-27 39.16153321463868 41.0 40.0 41.0 36.0 41.0 28-29 39.09078994897108 41.0 40.0 41.0 36.0 41.0 30-31 39.02055046325752 41.0 39.0 41.0 36.0 41.0 32-33 38.84275235295951 41.0 39.0 41.0 35.0 41.0 34-35 38.851315236982856 41.0 39.0 41.0 35.0 41.0 36-37 38.85298518272681 41.0 39.0 41.0 35.0 41.0 38-39 38.75764883740972 41.0 39.0 41.0 35.0 41.0 40-41 38.68099819024271 41.0 39.0 41.0 35.0 41.0 42-43 38.54812221637509 40.5 38.5 41.0 35.0 41.0 44-45 38.40013238548747 40.0 38.0 41.0 34.5 41.0 46-47 38.257088674439885 40.0 38.0 41.0 34.0 41.0 48-49 38.07976088100525 40.0 38.0 41.0 33.5 41.0 50-51 36.81979758955732 39.0 36.0 40.0 31.5 40.5 52-53 37.151027179364 39.5 36.5 40.5 32.5 40.5 54-55 37.6361319784296 40.0 37.0 41.0 33.0 41.0 56-57 37.50605911140367 40.0 36.0 41.0 33.0 41.0 58-59 37.38148748480408 40.0 35.5 41.0 33.0 41.0 60-61 37.1539127979361 39.0 35.0 41.0 33.0 41.0 62-63 36.87962592848616 39.0 35.0 41.0 32.0 41.0 64-65 36.64234327813604 39.0 35.0 41.0 32.0 41.0 66-67 36.40550985831819 38.0 35.0 41.0 32.0 41.0 68-69 36.110401612095856 37.0 35.0 40.0 31.0 41.0 70-71 35.813839325824155 37.0 35.0 40.0 31.0 41.0 72-73 35.48744217302893 36.0 35.0 39.0 31.0 41.0 74-75 35.188049734403904 36.0 35.0 39.0 30.5 41.0 76-77 34.829610984694995 35.0 35.0 38.5 30.0 40.0 78-79 34.555196222062904 35.0 35.0 37.0 30.0 39.0 80-81 34.22249746505628 35.0 34.0 37.0 30.0 39.0 82-83 33.92892485381672 35.0 34.0 36.5 29.5 39.0 84-85 33.675599631080885 35.0 34.0 36.0 29.0 37.0 86-87 33.42587283658827 35.0 34.0 36.0 29.0 37.0 88-89 33.24365118074286 35.0 34.0 35.0 29.0 36.5 90-91 33.05837017329297 35.0 34.0 35.0 29.0 36.0 92-93 32.90649312310566 35.0 34.0 35.0 28.5 36.0 94-95 32.76513586014812 35.0 34.0 35.0 27.5 36.0 96-97 32.63094061539083 35.0 33.5 35.0 27.0 35.5 98-99 32.57965086536469 35.0 33.0 35.0 27.0 35.0 100-101 31.41853571016013 34.5 31.0 35.0 23.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 13.0 7 250.0 8 790.0 9 479.0 10 518.0 11 944.0 12 1466.0 13 1718.0 14 1791.0 15 1882.0 16 1955.0 17 2173.0 18 2455.0 19 2748.0 20 3165.0 21 4085.0 22 4661.0 23 4848.0 24 4788.0 25 5178.0 26 5360.0 27 5668.0 28 6311.0 29 7524.0 30 9075.0 31 11568.0 32 15061.0 33 21181.0 34 34300.0 35 61736.0 36 133385.0 37 253638.0 38 348288.0 39 131728.0 40 24.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.530165729013916 19.884359731770402 13.482825207264568 24.10264933195111 2 15.250459773697827 20.66267921089448 39.77890523436082 24.30795578104687 3 18.2914005278922 27.46460472719305 29.551511662126988 24.69248308278776 4 12.099428468747307 17.662461013207377 40.27819288308821 29.9599176349571 5 12.914461005873001 39.36515474616641 35.16759966041839 12.552784587542195 6 28.61791017956386 38.70799465323987 19.859289995727725 12.814805171468544 7 26.050145128965834 32.09385434295909 23.949121433430452 17.906879094644623 8 25.097684720844484 35.49874673849466 21.460017565830608 17.943550974830256 9 26.545673909974198 15.400722802758459 20.68349050289983 37.37011278436751 10-11 24.88122894804878 25.867565005491617 29.1168311094894 20.134374936970207 12-13 25.575656839213973 23.605643435641767 28.825014622912228 21.993685102232032 14-15 22.78900459120316 25.22745073582147 25.97198503961128 26.01155963336409 16-17 22.680062406618294 27.914392285507066 26.823927919530142 22.581617388344497 18-19 22.652073537267274 27.593302872391888 27.417415007783358 22.33720858255748 20-21 23.970993610541573 26.236859833176112 26.996138259570774 22.796008296711538 22-23 23.71196914597316 26.909019518621403 26.437796549838723 22.941214785566714 24-25 23.04746744327216 26.774275187564534 26.881055386325166 23.297201982838143 26-27 22.966315044455488 27.39224426405954 27.007968799564335 22.633471891920635 28-29 22.89155024872703 27.48662851568731 26.98266520223625 22.63915603334941 30-31 23.063999765299968 26.87535411284304 27.06980675752736 22.99083936432963 32-33 23.004224600597382 26.924448592441557 27.110099985881327 22.96122682107973 34-35 23.417149971487614 26.707763620394697 26.923210916485296 22.951875491632393 36-37 22.76327185810828 26.713960239102757 27.440603726661365 23.0821641761276 38-39 22.812652139511304 27.01640149886357 26.872868900781434 23.298077460843704 40-41 23.335594898642146 26.614620102870663 27.208097626273275 22.84168737221392 42-43 23.170556167794672 26.88280337467017 27.15986959001168 22.786770867523476 44-45 23.273342936442514 26.63120668171011 26.812754958422698 23.28269542342468 46-47 23.15256235594827 26.556262915377804 26.747048372043558 23.54412635663037 48-49 22.814218421385572 26.82795570770311 27.040010854876535 23.31781501603478 50-51 22.876010539498363 27.019566281673047 26.7798697048097 23.324553474018888 52-53 23.23993311049054 26.900015952267882 26.381521406293263 23.478529530948318 54-55 23.192076306848293 26.40127838174327 26.772031090420022 23.634614220988418 56-57 23.10224079042607 26.77969862118251 26.712909928778593 23.40515065961283 58-59 23.380300674732403 26.79018192604764 26.883389167512163 22.946128231707792 60-61 23.242298270460655 26.994990144885545 26.62045453190843 23.14225705274538 62-63 22.911640886833005 26.729070784225705 27.058989682411216 23.300298646530074 64-65 23.538036571500903 26.303669762217822 26.64323409805631 23.51505956822496 66-67 23.034114833588863 26.760622143648355 26.390030003154365 23.815233019608417 68-69 23.01687639926143 26.8389572717588 27.174184096505723 22.969982232474052 70-71 23.388866783894443 26.420301919589566 26.891856458926576 23.298974837589412 72-73 23.223109885455383 26.588167451139306 27.028688411869222 23.160034251536093 74-75 23.24937611963834 26.435291550615446 26.9585534410142 23.356778888732016 76-77 23.093795667950793 26.248310801518947 26.613562728167857 24.044330802362403 78-79 23.26749559859155 25.910403829225352 26.93217246185446 23.88992811032864 80-81 22.936401751555913 26.752232444880892 26.612751939815602 23.69861386374759 82-83 22.945540967186258 26.90875369422884 26.858809371371123 23.286895967213777 84-85 23.055911682871226 26.2236412290886 27.172300203405246 23.548146884634924 86-87 22.94783606998 27.01095254934931 26.771022964164676 23.27018841650602 88-89 23.255439642324887 26.41637051473117 26.546325805342196 23.781864037601743 90-91 22.980800437128813 26.419385122584927 26.648309334643745 23.951505105642518 92-93 22.925417579863566 26.356638897535067 27.07561384939024 23.642329673211123 94-95 23.27247940415529 26.058304622307137 27.01498229664984 23.65423367688773 96-97 23.217975822229395 26.54626982802722 26.974505708894945 23.26124864084844 98-99 22.671649802818347 26.66900757326067 26.99786522153885 23.661477402382133 100-101 23.31480847917949 26.234376246850484 26.64267821878895 23.80813705518107 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 1.0 2 2.5 3 4.0 4 4.5 5 6.0 6 10.0 7 17.0 8 30.5 9 39.0 10 45.5 11 56.0 12 46.5 13 52.0 14 61.0 15 60.5 16 77.0 17 91.0 18 106.5 19 125.0 20 133.5 21 165.0 22 219.5 23 267.0 24 345.5 25 470.0 26 665.5 27 919.0 28 1339.5 29 2444.5 30 4406.0 31 7940.0 32 13161.0 33 19981.0 34 27295.0 35 34063.5 36 40572.5 37 44607.0 38 43897.5 39 40838.5 40 37993.0 41 34776.0 42 32309.5 43 31425.5 44 31586.0 45 33120.0 46 35819.5 47 36705.5 48 37800.0 49 41079.0 50 43700.5 51 42903.0 52 41116.0 53 41183.5 54 42118.0 55 41960.0 56 36358.0 57 30319.0 58 27608.5 59 25469.5 60 21180.5 61 16025.0 62 12916.5 63 9384.0 64 5896.0 65 3958.0 66 2947.5 67 2410.5 68 1905.5 69 1296.5 70 816.0 71 535.0 72 378.0 73 324.0 74 253.5 75 178.0 76 122.5 77 70.5 78 40.5 79 29.5 80 24.5 81 17.5 82 16.0 83 16.0 84 12.0 85 8.0 86 8.5 87 9.5 88 8.5 89 7.0 90 3.5 91 3.5 92 5.0 93 5.5 94 4.5 95 4.5 96 4.5 97 4.5 98 4.5 99 2.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.1546636546829074 2 0.0 3 9.167970046408265E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.03740531778934572 16-17 0.07384799872381857 18-19 0.026266234182959678 20-21 0.04056826745535657 22-23 0.06582602493321134 24-25 0.017969221290960197 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.02388256197089353 38-39 0.0055924617283090415 40-41 0.00586750082970129 42-43 0.003667188018563306 44-45 0.012376759562651158 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 4.5839850232041326E-5 58-59 0.015906428030518338 60-61 0.018656819044440817 62-63 0.030666859805235647 64-65 0.04891112019758809 66-67 0.018519299493744694 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.01778586189003203 80-81 0.05844580904585269 82-83 0.04950703825060463 84-85 0.029337504148506447 86-87 0.058904207548173104 88-89 0.03474660647588732 90-91 0.0 92-93 0.003162949666010851 94-95 0.0 96-97 0.0 98-99 7.792774539447026E-4 100-101 0.046481608135289905 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1090754.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.43163859903402 #Duplication Level Percentage of deduplicated Percentage of total 1 74.31217407430017 40.449334027208124 2 14.730053990038908 16.035619506601137 3 5.029767620491281 8.21335480067114 4 2.244780086950085 4.8874823370870075 5 1.13907075898921 3.1000743946014024 6 0.6457929487383423 2.109094103731797 7 0.40496022885838523 1.5429854176941213 8 0.28739269034283466 1.2514604045396216 9 0.18544841921534283 0.9084835200142527 >10 0.8714525454643148 8.332565625791855 >50 0.0739731487110445 2.824056037392266 >100 0.0685040637587192 7.437775653568206 >500 0.005099557031973405 1.845241001534715 >1k 0.0015298671095920213 1.0624731695644152 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 1711 0.15686396749404538 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 1709 0.15668060809311724 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 1581 0.14494560643371465 No Hit TAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCATCGCA 1318 0.12083384521166093 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 0.0 0.0 20-21 0.0 0.0 0.0 4.583985023204132E-5 0.0 22-23 0.0 0.0 0.0 2.291992511602066E-4 0.0 24-25 0.0 0.0 0.0 5.042383525524545E-4 0.0 26-27 0.0 0.0 0.0 8.709571544087851E-4 0.0 28-29 0.0 0.0 0.0 0.0012376759562651156 0.0 30-31 0.0 0.0 0.0 0.004263106071579843 0.0 32-33 0.0 0.0 0.0 0.009763888099424802 0.0 34-35 0.0 0.0 0.0 0.020215373952330223 0.0 36-37 0.0 0.0 0.0 0.03850547419491471 0.0 38-39 0.0 0.0 0.0 0.07600247168472452 0.0 40-41 0.0 0.0 0.0 0.11964200910562786 0.0 42-43 0.0 0.0 0.0 0.1592934795563436 0.0 44-45 0.0 0.0 0.0 0.2081129200534676 0.0 46-47 0.0 0.0 0.0 0.2655044125439833 0.0 48-49 0.0 0.0 0.0 0.3290384449655926 0.0 50-51 0.0 0.0 0.0 0.403803240694052 0.0 52-53 0.0 0.0 0.0 0.4752217273555724 0.0 54-55 0.0 0.0 0.0 0.5465026944663967 0.0 56-57 0.0 0.0 0.0 0.6341484881100596 0.0 58-59 0.0 0.0 0.0 0.7378382293349371 0.0 60-61 4.583985023204132E-5 0.0 0.0 0.8516127376108636 0.0 62-63 9.167970046408264E-5 0.0 0.0 0.9707963482141712 0.0 64-65 9.167970046408264E-5 0.0 0.0 1.0918593926769922 4.583985023204132E-5 66-67 9.167970046408264E-5 0.0 0.0 1.2285079862187074 9.167970046408264E-5 68-69 9.167970046408264E-5 0.0 0.0 1.3876181063741229 9.167970046408264E-5 70-71 9.167970046408264E-5 0.0 0.0 1.5649724869218908 9.167970046408264E-5 72-73 9.167970046408264E-5 0.0 0.0 1.7553912247857903 9.167970046408264E-5 74-75 9.167970046408264E-5 0.0 0.0 1.9468642792050268 1.3751955069612397E-4 76-77 9.167970046408264E-5 0.0 0.0 2.135357743359181 1.8335940092816528E-4 78-79 9.167970046408264E-5 0.0 0.0 2.3701952960979287 1.8335940092816528E-4 80-81 9.167970046408264E-5 0.0 0.0 2.626990137097824 1.8335940092816528E-4 82-83 9.167970046408264E-5 0.0 0.0 2.909867852879751 1.8335940092816528E-4 84-85 9.167970046408264E-5 0.0 0.0 3.1945333228207273 1.8335940092816528E-4 86-87 9.167970046408264E-5 0.0 0.0 3.5016144795251725 1.8335940092816528E-4 88-89 9.167970046408264E-5 0.0 0.0 3.832028119997726 1.8335940092816528E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 765 0.0 50.365566 1 GTATCAA 1615 0.0 48.303814 1 CCGTGCG 215 0.0 37.566643 9 ATCAACG 2130 0.0 36.33966 3 TCAACGC 2205 0.0 35.10362 4 ACCGTGC 310 0.0 32.169952 8 AACCGTG 255 0.0 31.657866 7 AAACCGT 240 0.0 31.657866 6 AATGCGG 215 0.0 30.921637 7 TATCAAC 2575 0.0 30.428434 2 ACGCAGA 2585 0.0 30.12702 7 CGCAGAG 2620 0.0 29.725924 8 AAATGCG 230 0.0 28.905008 6 GTACATG 4195 0.0 28.120941 1 ATGCGGG 245 0.0 27.136555 8 TGCGCGG 150 0.0 26.923996 12-13 TACATGG 4415 0.0 26.566792 2 ACATGGG 4320 0.0 26.161709 3 ATAACGC 130 1.0042091E-5 25.569815 4 CAACGCA 3035 0.0 25.503618 5 >>END_MODULE