##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224519_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1090754 Sequences flagged as poor quality 0 Sequence length 101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.18391039592795 34.0 33.0 34.0 31.0 34.0 2 33.314791419513476 34.0 34.0 34.0 31.0 34.0 3 33.43232846269645 34.0 34.0 34.0 31.0 34.0 4 36.640258023348984 37.0 37.0 37.0 35.0 37.0 5 36.6761368741256 37.0 37.0 37.0 35.0 37.0 6 36.715233682388515 37.0 37.0 37.0 36.0 37.0 7 36.69108341569226 37.0 37.0 37.0 36.0 37.0 8 36.679965418416984 37.0 37.0 37.0 36.0 37.0 9 38.53520133779019 39.0 39.0 39.0 38.0 39.0 10-11 38.558777231163035 39.0 39.0 39.0 37.5 39.0 12-13 38.55369863415582 39.0 39.0 39.0 37.5 39.0 14-15 40.17913480033078 41.0 40.0 41.0 38.0 41.0 16-17 40.1885998126067 41.0 40.0 41.0 38.0 41.0 18-19 40.18614554702527 41.0 40.0 41.0 38.5 41.0 20-21 40.18878363040612 41.0 40.0 41.0 39.0 41.0 22-23 40.11843321225501 41.0 40.0 41.0 38.0 41.0 24-25 40.086739539804576 41.0 40.0 41.0 38.0 41.0 26-27 40.03515503954145 41.0 40.0 41.0 38.0 41.0 28-29 40.00519778061781 41.0 40.0 41.0 38.0 41.0 30-31 39.94963942373808 41.0 40.0 41.0 38.0 41.0 32-33 39.91320499397665 41.0 40.0 41.0 38.0 41.0 34-35 39.84295267310503 41.0 40.0 41.0 38.0 41.0 36-37 39.746261301815075 41.0 40.0 41.0 37.5 41.0 38-39 39.65926597564621 41.0 40.0 41.0 37.0 41.0 40-41 39.54665121558115 41.0 40.0 41.0 37.0 41.0 42-43 39.46882340106018 41.0 40.0 41.0 36.0 41.0 44-45 39.26154018229592 41.0 39.0 41.0 35.5 41.0 46-47 39.06650720510766 41.0 39.0 41.0 35.0 41.0 48-49 38.99095946473723 41.0 39.0 41.0 35.0 41.0 50-51 38.862020217207544 40.5 38.5 41.0 35.0 41.0 52-53 38.64903772986393 40.0 38.0 41.0 35.0 41.0 54-55 38.4818643800527 40.0 37.0 41.0 35.0 41.0 56-57 38.282983605835966 40.0 37.0 41.0 35.0 41.0 58-59 38.04910089717755 40.0 36.0 41.0 35.0 41.0 60-61 37.819588559840255 39.5 35.5 41.0 34.0 41.0 62-63 37.60250615629189 39.0 35.0 41.0 34.0 41.0 64-65 37.35033426418789 39.0 35.0 41.0 34.0 41.0 66-67 37.07636689849407 38.5 35.0 41.0 34.0 41.0 68-69 36.809267717560516 37.5 35.0 40.0 33.0 41.0 70-71 36.51717527508494 37.0 35.0 40.0 33.0 41.0 72-73 36.20199146645348 36.5 35.0 39.0 33.0 41.0 74-75 35.87136787946686 36.0 35.0 39.0 33.0 41.0 76-77 33.98073717813549 34.5 33.0 36.5 29.5 39.0 78-79 35.2497231273046 35.0 35.0 37.0 32.5 39.0 80-81 35.13602746357107 35.0 35.0 37.0 33.0 39.0 82-83 34.88517805114627 35.0 35.0 37.0 33.0 39.0 84-85 34.64422775437908 35.0 35.0 36.0 33.0 37.0 86-87 34.419214598342066 35.0 35.0 36.0 33.0 37.0 88-89 34.23986664270771 35.0 35.0 35.5 32.5 37.0 90-91 34.074501216589624 35.0 35.0 35.0 32.0 36.0 92-93 33.97104663379643 35.0 35.0 35.0 32.0 36.0 94-95 33.859580620378196 35.0 35.0 35.0 32.0 36.0 96-97 33.80070024955214 35.0 34.0 35.0 32.0 36.0 98-99 33.75623742842107 35.0 34.0 35.0 32.0 35.5 100-101 32.94545424541189 34.5 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 7.0 14 16.0 15 48.0 16 130.0 17 282.0 18 491.0 19 703.0 20 1053.0 21 1475.0 22 2029.0 23 2076.0 24 1993.0 25 2497.0 26 3222.0 27 4236.0 28 5604.0 29 6535.0 30 7142.0 31 8215.0 32 10053.0 33 13520.0 34 22433.0 35 44853.0 36 121672.0 37 272749.0 38 399080.0 39 158604.0 40 35.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.57749092108391 20.163853477072855 13.679913623625264 23.57874197821797 2 15.126050420168067 20.887936234934735 40.14470723921251 23.841306105684694 3 17.940800583816333 27.90803425887047 29.848160080091386 24.303005077221812 4 12.017191777431025 17.835093889181245 40.694052004393285 29.45366232899444 5 12.799036262988722 39.00072793682168 35.75040751626856 12.44982828392103 6 28.40805534520158 38.67810707088858 20.16815890659122 12.745678677318626 7 25.882646316217954 32.01656835546787 24.259915618003696 17.840869710310482 8 25.137565390546357 35.288066786828196 21.457633893618542 18.116733929006905 9 26.45335245160687 15.491394026517435 20.902971705810845 37.15228181606485 10-11 24.850332888992384 25.793533647366868 29.36432046089219 19.991813002748557 12-13 25.573960764755387 23.77149201378129 28.970693666949654 21.683853554513664 14-15 22.733356925576253 25.443592230695465 26.303960379700648 25.519090464027638 16-17 22.45080008874595 28.043124297504296 27.09653139021264 22.40954422353711 18-19 22.402576566301843 27.548328954099645 27.920731897384744 22.12836258221377 20-21 23.683454160812474 26.42951934118273 27.382264833358928 22.504761664645873 22-23 23.563959482311674 26.86357391608491 26.877555333177167 22.694911268426246 24-25 23.21337464433892 26.659717323072506 27.09542649762709 23.03148153496148 26-27 22.88436202408861 27.367443429725054 27.259533355398208 22.48866119078813 28-29 22.827678459280232 27.320206727538277 27.404096960606427 22.448017852575063 30-31 23.045240325044936 26.699039139887866 27.43885696106731 22.81686357399989 32-33 22.9249073460753 26.889326405394442 27.559872656720934 22.625893591809323 34-35 23.333142326690123 26.7363306095786 27.082434647077026 22.84809241665425 36-37 22.675955875341973 26.7059248501918 27.51231287727096 23.105806397195266 38-39 22.75526837398717 26.967125493007586 27.09717314811589 23.18043298488935 40-41 23.04185911763789 26.764834233933595 27.369782737445842 22.82352391098268 42-43 23.026731967061316 26.891535579974953 27.472876560617703 22.60885589234603 44-45 23.24684017255844 26.550481595752974 27.123353611853535 23.079324619835052 46-47 23.00752721371974 26.508573921716426 27.006534412446538 23.477364452117293 48-49 22.70889067768795 26.589841006731223 27.40919450867211 23.292073806908718 50-51 23.04405943044903 26.720277899508048 27.021629074933486 23.214033595109438 52-53 23.174473804359184 26.85367186368329 26.678242756845265 23.293611575112262 54-55 23.156412903367762 26.4299282881383 27.006685283757843 23.4069735247361 56-57 23.249911865817825 26.58291971010387 26.788527932232263 23.378640491846042 58-59 23.44070005585552 26.630655600731167 27.02948602832398 22.899158315089338 60-61 23.28551547679913 26.835928275507886 26.765955398022328 23.112600849670656 62-63 22.957742992462098 26.672833654517884 27.170150189685298 23.199273163334723 64-65 23.272525244005525 26.42076031809189 26.908633844111506 23.398080593791086 66-67 23.083114982846727 26.618284232741757 26.72243237246895 23.576168411942565 68-69 23.236403442022674 26.611683294308342 27.15511471880919 22.996798544859796 70-71 23.445433159080782 26.3541091758545 26.97047180207453 23.229985862990187 72-73 23.14765749197344 26.46435401566256 27.11628836566265 23.271700126701347 74-75 23.216600626722432 26.31950008892931 27.009619034172694 23.454280250175565 76-77 22.97953428417668 26.01143615728979 26.917050729268183 24.09197882926534 78-79 23.123454769590186 25.898714945933843 26.873496602269555 24.10433368220642 80-81 22.675618248206973 26.56378001847467 26.870560405984328 23.890041327334032 82-83 22.723799264259274 26.564961780446716 27.175970387008793 23.53526856828522 84-85 22.962778919728695 26.07400942124787 27.2964979289024 23.66671373012104 86-87 22.595012257575952 26.689381840451652 27.140996044937722 23.574609857034677 88-89 23.016372160908876 26.086358610649146 26.663619844621245 24.233649383820733 90-91 22.910619626423557 26.235429803603743 26.71537303553322 24.138577534439477 92-93 22.857043319136725 26.173420484096543 27.16809985024114 23.80143634652559 94-95 22.88013612601925 25.926606732590486 26.995592040001686 24.19766510138858 96-97 22.873718546986762 26.295617526958416 27.136595419315444 23.694068506739374 98-99 21.96911494250766 26.524037500664676 27.307486380980496 24.199361175847166 100-101 22.601713882299837 26.077736181760887 27.018164987203914 24.302384948735366 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 1.0 2 3.0 3 3.0 4 3.0 5 9.0 6 11.5 7 14.5 8 28.5 9 42.0 10 40.0 11 32.5 12 42.5 13 61.0 14 64.5 15 70.0 16 84.5 17 89.5 18 95.0 19 115.0 20 137.5 21 169.5 22 221.5 23 305.5 24 382.5 25 500.5 26 732.5 27 1038.5 28 1494.0 29 2734.5 30 4956.5 31 8810.5 32 14566.5 33 21579.5 34 28924.5 35 35284.5 36 40915.0 37 44161.0 38 42915.0 39 39473.5 40 36827.5 41 34329.5 42 32254.0 43 31657.0 44 32160.5 45 33562.5 46 35063.0 47 36532.5 48 38019.0 49 41034.5 50 44377.5 51 43128.5 52 40550.0 53 40737.0 54 42068.0 55 41313.0 56 35430.0 57 29989.0 58 27893.5 59 26140.5 60 21446.5 61 15768.0 62 12553.5 63 8979.5 64 5456.5 65 3520.0 66 2687.0 67 2161.5 68 1638.5 69 1123.0 70 682.5 71 450.0 72 322.5 73 258.5 74 203.0 75 131.5 76 85.0 77 45.5 78 26.5 79 10.0 80 10.0 81 7.5 82 2.0 83 2.0 84 1.5 85 0.5 86 0.5 87 0.0 88 0.5 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.48333538084664374 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0010543165553369505 22-23 0.0018794338595136942 24-25 3.208789516242892E-4 26-27 0.002842070714386562 28-29 0.003942227119955554 30-31 0.001145996255801033 32-33 1.3751955069612397E-4 34-35 0.00380470756925943 36-37 0.002383672212066149 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.009993087350585008 46-47 0.08329100787161908 48-49 0.0014668752074253224 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.008021973790607232 58-59 0.04043074790466045 60-61 0.030391820703843393 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 2.7503910139224793E-4 78-79 0.009122130196176224 80-81 0.006555098583181909 82-83 0.0015127150576573637 84-85 0.0025670316129943137 86-87 0.0 88-89 0.0 90-91 0.0 92-93 4.5839850232041326E-5 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.07082256860850385 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1090754.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.755839779685296 #Duplication Level Percentage of deduplicated Percentage of total 1 73.10319594000407 38.56620492393796 2 15.246176120652038 16.086496493479657 3 5.264436903345159 8.331893694094195 4 2.3577718209833733 4.975449296994228 5 1.2375590068981015 3.2644232342911352 6 0.7356105894671159 2.328465263890021 7 0.4436722461956196 1.638441135449244 8 0.3066386378696896 1.2941583079771428 9 0.21383642301087413 1.015300806428042 >10 0.9282758528968236 8.536257717548459 >50 0.07977556792133833 2.9045564514727 >100 0.07556412408570135 7.972345846110873 >500 0.00626799070046636 2.3006581846323146 >1k 0.0012187759695351256 0.7853486436941066 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 1555 0.1425619342216485 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 1361 0.12477607233161649 No Hit TCATTTAGGTGAGAAAACCCTCTCTACTTTGGCGCGACTGCGTGAACGCG 1224 0.11221595336803715 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 1189 0.10900716385179426 No Hit CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG 1184 0.10854876534947386 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 9.167970046408264E-5 14-15 0.0 0.0 0.0 0.0 9.167970046408264E-5 16-17 0.0 0.0 0.0 0.0 9.167970046408264E-5 18-19 0.0 0.0 0.0 0.0 9.167970046408264E-5 20-21 0.0 0.0 0.0 4.583985023204132E-5 9.167970046408264E-5 22-23 0.0 0.0 0.0 2.291992511602066E-4 9.167970046408264E-5 24-25 0.0 0.0 0.0 5.042383525524545E-4 9.167970046408264E-5 26-27 0.0 0.0 0.0 8.709571544087851E-4 9.167970046408264E-5 28-29 0.0 0.0 0.0 0.0013293556567291983 9.167970046408264E-5 30-31 0.0 0.0 0.0 0.004308945921811884 9.167970046408264E-5 32-33 0.0 0.0 0.0 0.00971804824919276 9.167970046408264E-5 34-35 0.0 0.0 0.0 0.020307053652794307 9.167970046408264E-5 36-37 0.0 0.0 0.0 0.03887219299677104 9.167970046408264E-5 38-39 0.0 0.0 0.0 0.07678174913866923 9.167970046408264E-5 40-41 0.0 0.0 0.0 0.12074216551119685 9.167970046408264E-5 42-43 0.0 0.0 0.0 0.16080619461400097 9.167970046408264E-5 44-45 0.0 0.0 0.0 0.20971731481158906 9.167970046408264E-5 46-47 0.0 0.0 0.0 0.26706296745187275 9.167970046408264E-5 48-49 0.0 0.0 0.0 0.3307803592744102 9.167970046408264E-5 50-51 0.0 0.0 0.0 0.4062327527563502 1.8335940092816528E-4 52-53 0.0 0.0 0.0 0.4782471574708871 1.8335940092816528E-4 54-55 0.0 0.0 0.0 0.5508574802384405 1.8335940092816528E-4 56-57 0.0 0.0 0.0 0.6391450317853522 1.8335940092816528E-4 58-59 0.0 0.0 0.0 0.743247331662318 1.8335940092816528E-4 60-61 0.0 0.0 0.0 0.8578011173921892 1.8335940092816528E-4 62-63 0.0 0.0 0.0 0.9777640054494414 1.8335940092816528E-4 64-65 0.0 0.0 0.0 1.0998813664675995 1.8335940092816528E-4 66-67 0.0 0.0 0.0 1.238134354767436 1.8335940092816528E-4 68-69 0.0 0.0 0.0 1.3986196704298126 1.8335940092816528E-4 70-71 0.0 0.0 0.0 1.577349246484542 1.8335940092816528E-4 72-73 0.0 0.0 0.0 1.769234859555867 2.291992511602066E-4 74-75 0.0 0.0 0.0 1.962449828283921 2.7503910139224793E-4 76-77 0.0 0.0 0.0 2.1518600894427156 2.7503910139224793E-4 78-79 0.0 0.0 0.0 2.3878436384372645 2.7503910139224793E-4 80-81 0.0 0.0 0.0 2.646105354644585 2.7503910139224793E-4 82-83 0.0 0.0 0.0 2.9313667426385788 3.6671880185633056E-4 84-85 0.0 0.0 0.0 3.2184158847916216 4.5839850232041324E-4 86-87 0.0 0.0 0.0 3.5271014362541875 4.5839850232041324E-4 88-89 0.0 0.0 0.0 3.8599904286392714 4.5839850232041324E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 1760 0.0 45.28719 1 GGTATCA 1000 0.0 41.5232 1 CCGTGCG 155 0.0 39.829773 9 ATCAACG 2155 0.0 36.14038 3 TCAACGC 2220 0.0 35.08222 4 TAACGTA 65 0.005850355 29.22421 5 CAACGCA 2695 0.0 28.898893 5 TATCAAC 2760 0.0 28.734495 2 GTACATG 4615 0.0 28.543613 1 AAACCGT 220 1.8189894E-12 28.061884 6 ACGCAGA 2800 0.0 27.815187 7 AACCGTG 240 0.0 27.702114 7 TACATGG 4700 0.0 27.584234 2 ACCGTGC 295 0.0 27.36674 8 CGCAGAG 2850 0.0 27.3272 8 GCGTAAT 70 0.008197785 27.273039 1 ACATGGG 4670 0.0 27.252985 3 AACGCAG 2890 0.0 26.948969 6 AATGCCG 125 7.403338E-6 26.594032 9 CGATTAT 200 7.203198E-10 26.119139 2 >>END_MODULE