##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224504_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 882216 Sequences flagged as poor quality 0 Sequence length 101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.36684553442694 34.0 31.0 34.0 31.0 34.0 2 32.53124291556716 34.0 31.0 34.0 31.0 34.0 3 32.67529040507087 34.0 31.0 34.0 31.0 34.0 4 35.941916718808095 37.0 37.0 37.0 35.0 37.0 5 35.963829719705835 37.0 37.0 37.0 35.0 37.0 6 36.06636696681992 37.0 37.0 37.0 35.0 37.0 7 36.02574992972242 37.0 37.0 37.0 35.0 37.0 8 36.06139652874126 37.0 37.0 37.0 35.0 37.0 9 37.80845733924572 39.0 39.0 39.0 36.0 39.0 10-11 37.88874096593125 39.0 39.0 39.0 37.0 39.0 12-13 37.90565122373659 39.0 39.0 39.0 37.0 39.0 14-15 39.44104958422881 41.0 40.0 41.0 37.0 41.0 16-17 39.292249857177836 41.0 40.0 41.0 37.0 41.0 18-19 39.386546492015555 41.0 40.0 41.0 37.0 41.0 20-21 39.4511978925796 41.0 40.0 41.0 37.0 41.0 22-23 39.4138929695222 41.0 40.0 41.0 37.0 41.0 24-25 39.37930903542896 41.0 40.0 41.0 37.0 41.0 26-27 39.239952007218186 41.0 40.0 41.0 36.5 41.0 28-29 39.17733072172801 41.0 40.0 41.0 36.0 41.0 30-31 39.10388328935318 41.0 40.0 41.0 36.0 41.0 32-33 38.916564650833806 41.0 39.0 41.0 35.0 41.0 34-35 38.93044447164867 41.0 39.0 41.0 35.0 41.0 36-37 38.944601435476116 41.0 39.0 41.0 35.0 41.0 38-39 38.847236957842526 41.0 39.0 41.0 35.0 41.0 40-41 38.7794565049829 41.0 39.0 41.0 35.0 41.0 42-43 38.66415140963211 41.0 39.0 41.0 35.0 41.0 44-45 38.524015093809226 40.5 39.0 41.0 35.0 41.0 46-47 38.39077901556988 40.0 38.0 41.0 34.0 41.0 48-49 38.2318831215938 40.0 38.0 41.0 34.0 41.0 50-51 37.02012942408662 39.0 36.5 40.0 32.0 40.5 52-53 37.356907492042765 39.5 37.0 40.5 33.0 40.5 54-55 37.86628898138324 40.0 37.0 41.0 33.0 41.0 56-57 37.77407346953581 40.0 37.0 41.0 33.0 41.0 58-59 37.67531760929296 40.0 36.5 41.0 33.0 41.0 60-61 37.48287947622805 40.0 36.0 41.0 33.0 41.0 62-63 37.24320744579559 40.0 35.0 41.0 33.0 41.0 64-65 37.04383223609638 39.0 35.0 41.0 33.0 41.0 66-67 36.84655628553551 39.0 35.0 41.0 32.0 41.0 68-69 36.587407732346726 38.5 35.0 41.0 32.0 41.0 70-71 36.31153368336099 37.5 35.0 40.5 31.5 41.0 72-73 36.00781157902373 37.0 35.0 40.0 31.0 41.0 74-75 35.70898963519139 37.0 35.0 39.5 31.0 41.0 76-77 35.33484770169664 36.0 35.0 39.0 31.0 41.0 78-79 35.04911949001151 36.0 35.0 39.0 31.0 40.0 80-81 34.6752490319831 35.0 35.0 37.5 30.0 39.0 82-83 34.34881763649719 35.0 34.5 37.0 30.0 39.0 84-85 34.044402391251126 35.0 34.0 37.0 30.0 38.5 86-87 33.75507698794853 35.0 34.0 36.0 29.5 37.0 88-89 33.530775909754524 35.0 34.0 36.0 29.0 37.0 90-91 33.320005531525155 35.0 34.0 35.5 29.0 36.5 92-93 33.147652615685956 35.0 34.0 35.0 29.0 36.0 94-95 32.99145220671582 35.0 34.0 35.0 29.0 36.0 96-97 32.85109712360692 35.0 34.0 35.0 29.0 36.0 98-99 32.78343285544583 35.0 34.0 35.0 29.0 36.0 100-101 31.688785966248627 34.5 32.0 35.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 5.0 7 247.0 8 746.0 9 482.0 10 387.0 11 689.0 12 1139.0 13 1283.0 14 1325.0 15 1438.0 16 1497.0 17 1652.0 18 1951.0 19 2254.0 20 2603.0 21 3349.0 22 3888.0 23 3854.0 24 3448.0 25 3767.0 26 3990.0 27 4323.0 28 4769.0 29 5369.0 30 6809.0 31 8333.0 32 11308.0 33 15325.0 34 24856.0 35 44268.0 36 93428.0 37 175230.0 38 300272.0 39 147901.0 40 31.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.51936583544006 21.3700197637208 13.97548208834758 23.135132312491557 2 14.50156707831991 21.098485063164873 41.371774454072984 23.028173404442228 3 18.56467769121516 27.35291817282221 30.03038948643922 24.052014649523414 4 11.850385846550052 17.670162409205908 41.42171531688385 29.057736427360194 5 12.34516263590776 39.49712995456895 35.997306782012565 12.160400627510723 6 27.494513815210787 39.975584210669496 19.888893422925904 12.64100855119381 7 25.29255873844954 32.43627410974183 24.563372235370927 17.707794916437695 8 23.80029380559863 37.27375155290768 21.899738839467886 17.026215802025806 9 25.226588499868512 16.823317645565258 22.01501673059659 35.93507712396964 10-11 23.790375599626394 27.170726896814383 29.63027195154021 19.408625552019007 12-13 24.188520725083198 24.723423742031432 29.97174161429854 21.116313918586833 14-15 21.525974541388955 26.83132592963844 26.896072352710394 24.746627176262216 16-17 21.184203287588257 29.815724683341493 27.866062227445116 21.134009801625133 18-19 21.246312299741717 29.149102139943267 28.923701736762265 20.680883823552755 20-21 22.23710231963205 27.734832128310032 28.756191430878232 21.271874121179682 22-23 22.02410354623041 28.267308792730034 28.199878750689756 21.508708910349803 24-25 21.41574028568303 28.334078746209872 28.434241830076473 21.815939138030625 26-27 21.449452288328484 28.83959257143375 28.62592607706049 21.08502906317727 28-29 21.25550885497429 28.83160133119327 28.693879956835964 21.219009856996472 30-31 21.525794136583333 28.203863906344935 28.638621380704954 21.631720576366785 32-33 21.333607642572794 28.223416940975905 28.83182803304406 21.61114738340724 34-35 21.677117621988266 28.166458100963936 28.518809452560372 21.63761482448743 36-37 21.511666137590133 28.005702689220442 28.783105074599792 21.699526098589633 38-39 21.44312577685605 28.437933416953697 28.356825819308597 21.762114986881652 40-41 21.740404469214212 27.996125456757976 28.96884212029788 21.29462795372993 42-43 21.798126368397757 28.04479304639984 28.587646319020664 21.569434266181737 44-45 21.85170217095452 27.969099564856847 28.339909321087127 21.839288943101504 46-47 21.804580737597142 27.885914560606473 28.310243749829972 21.999260951966413 48-49 21.301982734387042 28.211911822048112 28.53292164277229 21.95318380079255 50-51 21.47591972940867 28.304462852634728 28.25645873572912 21.963158682227483 52-53 21.703641738531154 28.285533248093436 27.937602582587484 22.073222430787926 54-55 21.704718572322424 27.98798706892643 28.065575777360646 22.241718581390497 56-57 21.70709894175576 28.189298312431422 28.03225060529394 22.071352140518876 58-59 21.790385710925122 28.150293768369377 28.351694446885034 21.707626073820464 60-61 21.881045953926463 28.420156987188317 28.025109787295793 21.673687271589422 62-63 21.55561388520234 28.135613783156955 28.354557828837006 21.954214502803698 64-65 22.099916478274995 27.698820546230944 27.945870210754855 22.255392764739206 66-67 21.522666193527247 28.206516286180566 27.782107960816347 22.488709559475836 68-69 21.5715879104437 28.038881634429664 28.53133472981673 21.8581957253099 70-71 21.952106967001278 27.63812943768873 28.448305176963462 21.961458418346528 72-73 21.740707491135957 27.956815564442266 28.479533356910324 21.82294358751145 74-75 21.800330077894756 27.78412542960001 28.192868866581428 22.22267562592381 76-77 21.54109651151192 27.72161239424359 28.179946861086176 22.557344233158318 78-79 21.68717246695973 27.226657823806 28.428833394269716 22.657336314964557 80-81 21.591119166083526 27.912067223230984 28.111847425313506 22.384966185371983 82-83 21.422726955705215 28.137511900569923 28.218483973710164 22.2212771700147 84-85 21.744567996562157 27.508109879369442 28.471204117244874 22.276118006823523 86-87 21.297969696574462 28.216868139439537 28.366462878332072 22.118699285653936 88-89 21.66937665689256 27.56644011601933 28.033941777163967 22.730241449924144 90-91 21.4079091741705 27.578846903706122 28.27142105788152 22.741822864241865 92-93 21.58491160614291 27.57841865906133 28.588690845942132 22.247978888853623 94-95 21.651500312848555 27.31048858782883 28.57809198654298 22.459919112779637 96-97 21.892030976540894 27.523588327575105 28.52923773769689 22.05514295818711 98-99 21.06676475372346 27.875011547710603 28.412638948004982 22.64558475056095 100-101 21.580121079337754 27.500046778333637 28.26981969645681 22.6500124458718 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1.0 1 0.5 2 0.5 3 1.0 4 3.0 5 6.5 6 12.5 7 18.5 8 19.5 9 26.0 10 38.0 11 41.5 12 46.5 13 57.0 14 62.5 15 74.0 16 79.0 17 96.5 18 119.0 19 129.0 20 142.5 21 159.0 22 200.0 23 276.0 24 371.0 25 481.5 26 771.0 27 1281.0 28 2333.5 29 4603.5 30 8457.0 31 13735.0 32 20766.5 33 28523.5 34 36124.0 35 42929.5 36 48879.0 37 51560.5 38 49156.0 39 44797.0 40 38390.5 41 31908.5 42 27475.0 43 24110.0 44 21997.5 45 21147.5 46 21458.0 47 21226.5 48 21380.5 49 23129.0 50 24924.0 51 24780.0 52 23808.5 53 24486.5 54 25595.0 55 25287.5 56 21512.0 57 18165.5 58 16962.0 59 15644.5 60 13311.0 61 10318.0 62 8418.5 63 6031.0 64 3662.5 65 2496.5 66 1948.0 67 1664.5 68 1325.5 69 891.5 70 566.5 71 415.0 72 336.5 73 273.5 74 213.0 75 162.5 76 116.5 77 79.5 78 58.5 79 41.0 80 25.0 81 17.0 82 12.5 83 10.0 84 7.0 85 7.5 86 6.0 87 3.5 88 4.0 89 4.5 90 3.0 91 2.0 92 3.0 93 2.5 94 1.0 95 1.0 96 2.5 97 3.5 98 2.5 99 1.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.14837636134461402 2 1.1335092539695494E-4 3 3.400527761908648E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.03559219057464385 16-17 0.07112770568658923 18-19 0.026070712841299637 20-21 0.03989952573972814 22-23 0.0636465446103902 24-25 0.01751271797382954 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.01994976286986407 38-39 0.006177625434134044 40-41 0.005384168956355359 42-43 0.002890448597622351 44-45 0.010484960599218333 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.016265857794463035 60-61 0.019212981854783862 62-63 0.028961161438921988 64-65 0.04641720395005305 66-67 0.018646227227799086 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.016832612421447807 80-81 0.05633540992228661 82-83 0.0487975733833891 84-85 0.030264697080986967 86-87 0.05673213816117595 88-89 0.03332517206670475 90-91 0.0 92-93 0.0031738259111147383 94-95 0.0 96-97 0.0 98-99 7.367810150802071E-4 100-101 0.04505699284528959 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 882216.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.41181088453747 #Duplication Level Percentage of deduplicated Percentage of total 1 72.53439711131323 35.84055912688151 2 14.395992754362604 14.226641429474737 3 5.374791537170921 7.967345489355061 4 2.5300285244409495 5.000531639286463 5 1.4141784241699566 3.4938558426039568 6 0.8543934038161475 2.533027517421585 7 0.5907160847550895 2.043184602646103 8 0.3924449161579832 1.5513131183837146 9 0.2982785363658519 1.3264634366843497 >10 1.4072498131793876 12.377972140774153 >50 0.1189538036465721 4.074165393162342 >100 0.08416952329366463 7.772344613298212 >500 0.0037099514338496294 1.2971857311526909 >1k 6.956158938468055E-4 0.49540991887513114 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 1750 0.19836411944467114 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 1469 0.1665125094081268 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 1105 0.1252527725636352 No Hit GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 989 0.11210406521758842 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1335092539695494E-4 2 0.0 0.0 0.0 0.0 1.1335092539695494E-4 3 0.0 0.0 0.0 0.0 1.1335092539695494E-4 4 0.0 0.0 0.0 0.0 1.1335092539695494E-4 5 0.0 0.0 0.0 0.0 1.1335092539695494E-4 6 0.0 0.0 0.0 0.0 1.1335092539695494E-4 7 0.0 0.0 0.0 0.0 1.1335092539695494E-4 8 0.0 0.0 0.0 0.0 1.1335092539695494E-4 9 0.0 0.0 0.0 0.0 1.1335092539695494E-4 10-11 0.0 0.0 0.0 0.0 1.1335092539695494E-4 12-13 0.0 0.0 0.0 0.0 3.400527761908648E-4 14-15 0.0 0.0 0.0 1.1335092539695494E-4 3.400527761908648E-4 16-17 0.0 0.0 0.0 2.8337731349238734E-4 3.400527761908648E-4 18-19 0.0 0.0 0.0 6.801055523817296E-4 4.5340370158781975E-4 20-21 0.0 0.0 0.0 6.801055523817296E-4 4.5340370158781975E-4 22-23 0.0 0.0 0.0 0.0010201583285725944 4.5340370158781975E-4 24-25 0.0 0.0 0.0 0.0015302374928588915 4.5340370158781975E-4 26-27 0.0 0.0 0.0 0.0018702902690497566 4.5340370158781975E-4 28-29 0.0 0.0 0.0 0.0034572032246071257 4.5340370158781975E-4 30-31 0.0 0.0 0.0 0.006631029135721864 4.5340370158781975E-4 32-33 0.0 0.0 0.0 0.0160958314063676 4.5340370158781975E-4 34-35 0.0 0.0 0.0 0.029357889677811333 6.801055523817296E-4 36-37 0.0 0.0 0.0 0.05367166317545817 6.801055523817296E-4 38-39 0.0 0.0 0.0 0.09170089864613655 6.801055523817296E-4 40-41 0.0 0.0 0.0 0.13732464611841091 6.801055523817296E-4 42-43 0.0 0.0 0.0 0.1843652801581472 6.801055523817296E-4 44-45 0.0 0.0 0.0 0.23435303825820433 6.801055523817296E-4 46-47 0.0 0.0 0.0 0.29221868567334985 6.801055523817296E-4 48-49 0.0 0.0 0.0 0.35484507195516746 6.801055523817296E-4 50-51 0.0 0.0 0.0 0.42421583829810383 7.934564777786846E-4 52-53 0.0 0.0 0.0 0.49925415091088804 7.934564777786846E-4 54-55 0.0 0.0 0.0 0.5822837037641575 7.934564777786846E-4 56-57 0.0 0.0 0.0 0.6784052885007754 7.934564777786846E-4 58-59 0.0 0.0 0.0 0.7815546306120043 7.934564777786846E-4 60-61 0.0 0.0 0.0 0.8944521523073714 7.934564777786846E-4 62-63 0.0 0.0 0.0 1.0108635526900442 7.934564777786846E-4 64-65 0.0 0.0 0.0 1.1333959030441525 7.934564777786846E-4 66-67 0.0 0.0 0.0 1.2720240848046283 8.50131940477162E-4 68-69 0.0 0.0 0.0 1.4308854067484607 9.068074031756395E-4 70-71 0.0 0.0 0.0 1.6095831406367602 9.068074031756395E-4 72-73 0.0 0.0 0.0 1.8019396610353926 9.068074031756395E-4 74-75 0.0 0.0 0.0 1.9968465772554567 9.068074031756395E-4 76-77 0.0 0.0 0.0 2.203995393418392 9.068074031756395E-4 78-79 0.0 0.0 0.0 2.4386318089900887 9.63482865874117E-4 80-81 0.0 0.0 0.0 2.702059359612612 0.0010201583285725944 82-83 0.0 0.0 0.0 2.9909341929867512 0.0011335092539695494 84-85 0.0 0.0 0.0 3.2917108735275713 0.0011335092539695494 86-87 0.0 0.0 0.0 3.5943011688747424 0.0012468601793665043 88-89 0.0 0.0 0.0 3.9396814385592647 0.0013602111047634593 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTGCG 110 0.0 47.51211 9 GGTATCA 735 0.0 43.35216 1 GTATCAA 1355 0.0 36.502056 1 AACCGTG 145 1.6370905E-11 36.017113 7 ATCAACG 1355 0.0 34.68807 3 TCAACGC 1415 0.0 33.217194 4 AAACCGT 160 5.2750693E-11 32.640507 6 TCGCACC 790 0.0 28.895979 1 GTCTAAT 610 0.0 28.846636 1 CGCACCA 840 0.0 27.694977 2 CGCAGAG 1750 0.0 27.135925 8 ACGCAGA 1770 0.0 26.823221 7 TCTAATG 660 0.0 26.615952 2 ATGCGGG 125 7.4030213E-6 26.593208 8 ACCGTGC 200 7.203198E-10 26.118328 8 CAACGCA 1825 0.0 26.01485 5 ACATGGG 2965 0.0 25.780148 3 GTTATTA 665 0.0 25.70772 8 CTAATGT 610 0.0 25.684334 3 TACATGG 3190 0.0 25.152447 2 >>END_MODULE