##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224502_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 340224 Sequences flagged as poor quality 0 Sequence length 101 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.062473546839726 34.0 31.0 34.0 30.0 34.0 2 32.229707486832204 34.0 31.0 34.0 30.0 34.0 3 32.37182268152746 34.0 31.0 34.0 31.0 34.0 4 35.66409777088036 37.0 35.0 37.0 35.0 37.0 5 35.670572916666664 37.0 35.0 37.0 35.0 37.0 6 35.78658472065463 37.0 37.0 37.0 35.0 37.0 7 35.74543536023326 37.0 37.0 37.0 35.0 37.0 8 35.78307526805869 37.0 37.0 37.0 35.0 37.0 9 37.48207357505643 39.0 38.0 39.0 35.0 39.0 10-11 37.562250164597444 39.0 38.5 39.0 35.0 39.0 12-13 37.54585214446953 39.0 38.0 39.0 35.0 39.0 14-15 38.995460343773516 41.0 39.0 41.0 36.0 41.0 16-17 38.83908542607223 41.0 39.0 41.0 35.5 41.0 18-19 38.924749576749434 41.0 39.0 41.0 35.5 41.0 20-21 38.993432268152745 41.0 39.5 41.0 36.0 41.0 22-23 38.933484998118885 41.0 39.0 41.0 35.0 41.0 24-25 38.86354137274266 41.0 39.0 41.0 35.0 41.0 26-27 38.65758735421369 41.0 39.0 41.0 35.0 41.0 28-29 38.57283436794582 41.0 39.0 41.0 35.0 41.0 30-31 38.46891459744168 40.0 38.5 41.0 34.0 41.0 32-33 38.243242687170806 40.0 38.0 41.0 34.0 41.0 34-35 38.21307138826185 40.0 38.0 41.0 34.0 41.0 36-37 38.18506924849511 40.0 38.0 41.0 34.0 41.0 38-39 38.04053799849511 40.0 38.0 41.0 33.5 41.0 40-41 37.91302641788939 40.0 38.0 41.0 33.0 41.0 42-43 37.71147685054552 40.0 37.0 41.0 33.0 41.0 44-45 37.47607311653499 40.0 37.0 41.0 32.0 41.0 46-47 37.21272014907825 40.0 36.0 41.0 31.0 41.0 48-49 36.92534036399549 40.0 36.0 41.0 31.0 41.0 50-51 35.570507959462006 38.0 34.0 40.0 28.5 40.5 52-53 35.88192337989089 38.5 35.0 40.0 29.5 40.5 54-55 36.2810839329383 39.0 35.0 41.0 30.0 41.0 56-57 36.087564369356656 38.0 35.0 41.0 30.0 41.0 58-59 35.89527634734763 37.5 35.0 41.0 30.0 41.0 60-61 35.60679875611362 37.0 35.0 40.0 29.0 41.0 62-63 35.294795487678705 36.0 35.0 40.0 29.0 41.0 64-65 35.02051442579007 36.0 35.0 40.0 28.5 41.0 66-67 34.755802059819416 35.0 34.5 39.0 28.0 41.0 68-69 34.439137156696766 35.0 34.0 39.0 28.0 41.0 70-71 34.160635346124906 35.0 34.0 38.5 27.0 41.0 72-73 33.87159782966516 35.0 34.0 37.0 26.5 40.0 74-75 33.615472453442436 35.0 34.0 37.0 26.0 39.5 76-77 33.31976433173439 35.0 34.0 36.0 26.0 39.0 78-79 33.124201996331834 35.0 34.0 36.0 26.0 39.0 80-81 32.879886486550035 35.0 33.0 35.5 26.0 37.0 82-83 32.659982834838225 35.0 33.0 35.0 25.0 37.0 84-85 32.47807033013544 35.0 33.0 35.0 25.0 36.5 86-87 32.288014660929264 35.0 33.0 35.0 25.0 36.0 88-89 32.17081540396915 35.0 33.0 35.0 25.0 36.0 90-91 32.02109051683597 35.0 33.0 35.0 24.5 36.0 92-93 31.89161699351016 35.0 33.0 35.0 24.0 35.0 94-95 31.760144786963885 35.0 33.0 35.0 24.0 35.0 96-97 31.63012309537246 35.0 32.0 35.0 23.0 35.0 98-99 31.588075797121896 35.0 32.0 35.0 23.0 35.0 100-101 30.344399572046655 34.0 29.5 35.0 20.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 81.0 8 299.0 9 199.0 10 185.0 11 453.0 12 689.0 13 787.0 14 817.0 15 938.0 16 913.0 17 994.0 18 1151.0 19 1412.0 20 1661.0 21 2443.0 22 2883.0 23 2645.0 24 2289.0 25 2307.0 26 2301.0 27 2454.0 28 2597.0 29 3115.0 30 3770.0 31 4783.0 32 6197.0 33 8808.0 34 14713.0 35 26821.0 36 57203.0 37 88893.0 38 76271.0 39 19146.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.30785172624935 18.544227780132825 13.50236682209976 23.645553671518062 2 16.429176072234764 18.773513920240784 38.25949962377727 26.53781038374718 3 21.244239089541008 24.774266365688487 27.335520127915725 26.645974416854777 4 13.595160835214449 15.773725545522948 37.39212989089541 33.238983728367195 5 14.334379702784048 38.43026946952596 32.64878433032355 14.58656649736644 6 30.910811700526715 35.896644563581646 18.244450714823177 14.948093021068473 7 28.103543547780284 30.716234010534237 20.565862490594434 20.614359951091046 8 27.229119638826184 33.53908013544018 19.28641130549285 19.945388920240784 9 26.949891835966895 15.709356188863808 19.69114465763732 37.64960731753198 10-11 27.28393646538751 24.56602120955606 25.822840246425883 22.32720207863055 12-13 27.602256160647105 21.91791290443943 26.731065415726107 23.74876551918736 14-15 24.420989489376904 23.96330911876313 23.99359570930166 27.622105682558306 16-17 24.049689002498866 26.78490798033266 25.27264678067212 23.892756236496353 18-19 24.17766252704864 25.858353325806753 26.300539796782385 23.663444350362216 20-21 25.255164301992206 24.01867235168713 26.47298390061016 24.253179445710504 22-23 25.211115980692927 25.108168445698116 25.609522941122837 24.071192632486124 24-25 24.241159229414652 24.721672639398864 26.21113191849646 24.826036212690024 26-27 24.131307609104592 25.909106941309258 26.534136333709558 23.4254491158766 28-29 23.95289573927765 26.042548438675695 26.479025583145223 23.52553023890143 30-31 24.040632054176072 24.784994591798345 26.650236314898418 24.524137039127165 32-33 23.892788280662153 25.132412763355905 26.86333121708051 24.11146773890143 34-35 24.527811089164786 24.81615053611738 26.37497648607976 24.28106188863807 36-37 23.95288977872249 24.73859912947226 27.21376733301288 24.094743758792376 38-39 23.911283033343082 25.374222345023817 26.111276860603372 24.60321776102973 40-41 24.537985567101224 24.94554593688914 26.561824835755964 23.954643660253677 42-43 24.547846151585073 25.222880322158698 26.46595435105304 23.763319175203186 44-45 24.417533023977754 24.889650600656438 26.119625657209127 24.573190718156685 46-47 24.518405521068473 24.740024219337847 25.790508606094807 24.951061653498872 48-49 24.056063064334086 25.130649219337847 26.1208791854778 24.692408530850262 50-51 24.06605648043642 25.560513073739656 25.593285600075244 24.780144845748683 52-53 24.740465105342363 25.665737866817157 24.72679763920241 24.86699938863807 54-55 24.481958944695258 24.811447752069224 25.496878527088036 25.20971477614748 56-57 24.420234904063207 25.477038656884876 25.21765072422874 24.885075714823177 58-59 24.921653594233234 25.600900763179247 25.561801055986077 23.91564458660144 60-61 24.75577023145603 25.608920744022505 25.10443891095425 24.53087011356721 62-63 24.506189174090736 25.27564611449237 25.757255005733438 24.460909705683456 64-65 25.575445313947437 24.596445722721672 24.89258648221832 24.93552248111257 66-67 24.089924900889457 25.196052923632333 24.87604751426207 25.83797466121614 68-69 24.391430351768246 25.31214729119639 25.980971360045146 24.31545099699022 70-71 24.833932938299476 24.83569648231753 25.607834838224232 24.722535741158765 72-73 24.44433667231001 25.258506160647105 25.82401594243792 24.473141224604966 74-75 24.660076890519186 24.86332533860045 25.86722277088036 24.609375 76-77 24.767506113619262 24.490629702784048 25.142994027464262 25.59887015613243 78-79 24.44110613140639 24.0918571783448 25.859856508069036 25.60718018217978 80-81 24.49530599280017 25.15455518693678 25.222053598738853 25.1280852215242 82-83 24.214179109964196 25.39476683061676 25.570480160568167 24.820573898850878 84-85 24.289895724452638 24.777093192319512 26.09652507949669 24.83648600373116 86-87 24.109498389729563 26.046381670857784 25.269334274495964 24.574785664916693 88-89 24.449462583743873 25.077661096238014 25.01973687112154 25.45313944889657 90-91 23.92159283295711 25.00088177200903 25.261298438675695 25.81622695635816 92-93 24.056200994981005 25.19756325183895 25.983995061837263 24.762240691342782 94-95 24.498859574868323 24.86361926260346 25.791537340105343 24.845983822422873 96-97 24.546328301354404 25.48732599699022 25.642223946576376 24.324121755079005 98-99 23.469476233655726 25.92554490716995 25.62132864614946 24.983650213024866 100-101 24.242023231877667 25.15880017644464 25.178209086898985 25.42096750477871 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 3.0 3 4.5 4 3.0 5 1.5 6 3.5 7 12.0 8 21.5 9 24.5 10 27.5 11 36.0 12 42.5 13 46.5 14 53.5 15 61.5 16 69.0 17 80.5 18 87.0 19 92.5 20 110.5 21 137.5 22 170.5 23 217.5 24 284.5 25 383.5 26 525.5 27 707.5 28 882.0 29 1122.0 30 1493.5 31 1944.5 32 2636.5 33 3368.0 34 4189.0 35 5164.0 36 6254.0 37 7127.5 38 7519.0 39 7750.5 40 7668.0 41 7567.0 42 7633.0 43 7790.0 44 8186.5 45 9270.5 46 10819.5 47 11283.0 48 11848.0 49 13587.5 50 15554.0 51 15984.5 52 15636.0 53 16755.0 54 17909.0 55 17939.5 56 15603.5 57 13421.0 58 12741.0 59 11867.0 60 9915.5 61 7536.0 62 6248.5 63 4563.5 64 2723.5 65 1770.0 66 1439.5 67 1250.0 68 979.0 69 680.5 70 412.5 71 267.5 72 200.0 73 134.5 74 104.0 75 81.0 76 60.0 77 37.5 78 22.0 79 15.5 80 6.5 81 6.5 82 7.0 83 6.5 84 5.5 85 3.0 86 4.0 87 3.0 88 1.5 89 1.5 90 1.5 91 1.5 92 0.5 93 1.0 94 2.0 95 2.5 96 3.0 97 3.0 98 1.5 99 0.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.15519187358916478 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.04100239841986456 16-17 0.0792125188111362 18-19 0.02821670428893905 20-21 0.043794676448457484 22-23 0.07201138073739655 24-25 0.01969290820165538 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.025130502257336342 38-39 0.005437594055680963 40-41 0.008523796087283672 42-43 0.005584556057185854 44-45 0.016018858164033107 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.019986832204665163 60-61 0.02145645221971407 62-63 0.033507336343115125 64-65 0.05378809255079007 66-67 0.02160341422121896 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.019252022197140707 80-81 0.06348758465011287 82-83 0.053347206546275394 84-85 0.03394822234762979 86-87 0.0643693566591422 88-89 0.03659353837471783 90-91 0.0 92-93 0.004849746049661399 94-95 0.0 96-97 0.0 98-99 0.0016165820165537999 100-101 0.05114277652370203 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 340224.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.39391177659926 #Duplication Level Percentage of deduplicated Percentage of total 1 81.25650339746493 46.636285872690394 2 11.926350935714868 13.689998668423625 3 3.155332537988229 5.432906319333884 4 1.1989108380444624 2.752407314669302 5 0.6105071812241183 1.751969764907867 6 0.3573075550893305 1.2304366976345646 7 0.2354057022201191 0.9457597873450938 8 0.14880837705647038 0.6832555891518381 9 0.10407019052849711 0.5375695800389795 >10 0.7865438497657149 9.151065899556645 >50 0.12230876855805596 5.016464716330404 >100 0.09380460639410208 10.250958999045032 >500 0.0036278024572304673 1.5351304121542355 >1k 5.182574938900668E-4 0.3857903787180863 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 1297 0.381219431903687 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 969 0.28481235891647855 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 881 0.2589470466516178 No Hit GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 878 0.25806527464258844 No Hit ATACAAAACCGTGCGCGGCTTAACCCGCGGTCTAATGTTATTAAATATGT 758 0.22279439428141457 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 601 0.17664832580887885 No Hit GGTCAGCACCGTCAATGCAGCGCCTTTATTGCAGCCCACCGGCAGCACTT 558 0.16400959367945825 No Hit TAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCATCGCA 516 0.1516647855530474 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 493 0.1449045334838224 No Hit GTATAGCTGGATCTGCAAGCGTGTAAGATCGTCGTGATCGCCACAGAAGC 489 0.1437288374717833 No Hit GTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCC 487 0.14314098946576373 No Hit CCTTTATTGCAGCCCACCGGCAGCACTTCGAGGCAATCCGTGGCGGAAAA 482 0.14167136945071482 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 476 0.13990782543265612 No Hit ATATACACCAGATTCAGACAGCCAATCACCCGTTGTTCACTGCGCAGCGG 476 0.13990782543265612 No Hit GTGTAAGATCGTCGTGATCGCCACAGAAGCAGATCTTGGTGACGCTGCCG 461 0.1354989653875094 No Hit GACTAACATTTCGCGATCGTTCATCGCATCACCAAAGGCCGTGCAATCGC 455 0.1337354213694507 No Hit CGCCTAATGCTTCGTATAGCTGGATCTGCAAGCGTGTAAGATCGTCGTGA 452 0.13285364936042138 No Hit ATCTTACACGCTTGCAGATCCAGCTATACGAAGCATTAGGCGAGCGTGCA 404 0.11874529721595184 No Hit TCCTTTCACCGGGCAATGGTCGGGCGACGTTTGCCGCTTCTGAAAACCGC 403 0.11845137321294205 No Hit GCTTAACCCGCGGTCTAATGTTATTAAATATGTTAAATAAACTTGATGGC 394 0.11580605718585402 No Hit TGCTGATACAGCACCAGCTCCGCGACATCCGCAGGTAAATCATCACGATG 384 0.1128668171557562 No Hit GTATCAACGCAGAGTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTAC 377 0.11080934913468773 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 364 0.10698833709556056 No Hit GAGTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCG 363 0.10669441309255079 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.939240030097818E-4 0.0 2 0.0 0.0 0.0 2.939240030097818E-4 0.0 3 0.0 0.0 0.0 2.939240030097818E-4 0.0 4 0.0 0.0 0.0 2.939240030097818E-4 0.0 5 0.0 0.0 0.0 2.939240030097818E-4 0.0 6 0.0 0.0 0.0 2.939240030097818E-4 0.0 7 0.0 0.0 0.0 2.939240030097818E-4 0.0 8 0.0 0.0 0.0 2.939240030097818E-4 0.0 9 0.0 0.0 0.0 2.939240030097818E-4 0.0 10-11 0.0 0.0 0.0 2.939240030097818E-4 0.0 12-13 0.0 0.0 0.0 5.878480060195636E-4 0.0 14-15 0.0 0.0 0.0 5.878480060195636E-4 0.0 16-17 0.0 0.0 0.0 8.817720090293454E-4 0.0 18-19 0.0 0.0 0.0 0.0011756960120391272 0.0 20-21 0.0 0.0 0.0 0.0016165820165537999 0.0 22-23 0.0 0.0 0.0 0.0020574680210684727 0.0 24-25 0.0 0.0 0.0 0.0023513920240782545 0.0 26-27 0.0 0.0 0.0 0.003086202031602709 0.0 28-29 0.0 0.0 0.0 0.003967974040632054 0.0 30-31 0.0 0.0 0.0 0.005878480060195636 0.0 32-33 0.0 0.0 0.0 0.012344808126410835 0.0 34-35 0.0 0.0 0.0 0.019398984198645598 0.0 36-37 0.0 0.0 0.0 0.028804552294958617 0.0 38-39 0.0 0.0 0.0 0.04702784048156509 0.0 40-41 0.0 0.0 0.0 0.0709826467268623 0.0 42-43 0.0 0.0 0.0 0.08744239089541009 0.0 44-45 0.0 0.0 0.0 0.11536517118133935 0.0 46-47 0.0 0.0 0.0 0.1497542795334838 0.0 48-49 0.0 0.0 0.0 0.1820859198645598 0.0 50-51 0.0 0.0 0.0 0.2183855342362679 0.0 52-53 0.0 0.0 0.0 0.2542442626034612 0.0 54-55 0.0 0.0 0.0 0.2955405850263356 0.0 56-57 0.0 0.0 0.0 0.34785905756207675 0.0 58-59 0.0 0.0 0.0 0.3975322140707299 0.0 60-61 0.0 0.0 0.0 0.45631701467268626 0.0 62-63 0.0 0.0 0.0 0.5236256113619262 2.939240030097818E-4 64-65 0.0 0.0 0.0 0.5881419300225734 2.939240030097818E-4 66-67 0.0 0.0 0.0 0.6600063487584651 2.939240030097818E-4 68-69 0.0 0.0 0.0 0.7450973476297968 2.939240030097818E-4 70-71 0.0 0.0 0.0 0.8382712565838977 2.939240030097818E-4 72-73 0.0 0.0 0.0 0.9349722535741158 2.939240030097818E-4 74-75 0.0 0.0 0.0 1.0422545146726863 2.939240030097818E-4 76-77 0.0 0.0 0.0 1.1507124717832957 2.939240030097818E-4 78-79 0.0 0.0 0.0 1.2737196670428894 2.939240030097818E-4 80-81 0.0 0.0 0.0 1.4059854683972912 2.939240030097818E-4 82-83 0.0 0.0 0.0 1.5567684819413092 2.939240030097818E-4 84-85 0.0 0.0 0.0 1.7197493416102332 2.939240030097818E-4 86-87 0.0 0.0 0.0 1.8975733634311513 2.939240030097818E-4 88-89 0.0 0.0 0.0 2.099499153498871 2.939240030097818E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAACCGT 125 0.0 64.573715 6 CCGTGCG 140 0.0 61.091476 9 TACGAGT 25 0.005026336 56.976807 4 GGTATCA 465 0.0 55.27696 1 ACCGTGC 155 0.0 55.138847 8 AACCGTG 145 0.0 52.392467 7 GTATCAA 860 0.0 47.046116 1 GACCGTG 70 2.0552124E-4 33.914764 7 ATCAACG 1220 0.0 33.85917 3 CTAATGT 410 0.0 33.58389 3 ATACAAA 285 0.0 33.40323 1 ATGTTAT 390 0.0 32.871235 6 TGGTATC 260 0.0 32.871235 2 GTCTAAT 365 0.0 32.602467 1 AATGCGG 105 1.9025047E-6 31.653784 7 TCAACGC 1300 0.0 31.41029 4 GTTATTA 400 0.0 30.862436 8 TCTAATG 420 0.0 30.52329 2 AAATGCG 110 2.7346578E-6 30.214973 6 TATATGA 80 4.4977714E-4 29.67542 2 >>END_MODULE