##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224499_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12309 Sequences flagged as poor quality 0 Sequence length 101 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.973109107157363 34.0 31.0 34.0 30.0 34.0 2 32.121862052156956 34.0 31.0 34.0 30.0 34.0 3 32.27516451377041 34.0 31.0 34.0 31.0 34.0 4 35.493947518076205 37.0 37.0 37.0 35.0 37.0 5 35.47396214152246 37.0 37.0 37.0 35.0 37.0 6 35.54399220082866 37.0 37.0 37.0 35.0 37.0 7 35.52953123730604 37.0 37.0 37.0 35.0 37.0 8 35.563165163701356 37.0 37.0 37.0 35.0 37.0 9 37.343163538873995 39.0 39.0 39.0 35.0 39.0 10-11 37.36704850109676 39.0 39.0 39.0 35.0 39.0 12-13 37.38020960272971 39.0 39.0 39.0 35.0 39.0 14-15 38.914534080753924 41.0 40.0 41.0 36.0 41.0 16-17 38.72503858964985 41.0 40.0 41.0 35.5 41.0 18-19 38.78064830611748 41.0 40.0 41.0 35.5 41.0 20-21 38.83101795434235 41.0 40.0 41.0 36.0 41.0 22-23 38.780810788853685 41.0 40.0 41.0 35.5 41.0 24-25 38.7102526606548 41.0 39.5 41.0 35.0 41.0 26-27 38.5210415143391 41.0 39.0 41.0 35.0 41.0 28-29 38.417133804533265 41.0 39.0 41.0 34.0 41.0 30-31 38.25083272402307 41.0 39.0 41.0 34.0 41.0 32-33 37.99618165569908 40.5 38.0 41.0 33.0 41.0 34-35 37.9220489073036 40.0 38.0 41.0 33.0 41.0 36-37 37.863311398163944 40.0 38.0 41.0 33.0 41.0 38-39 37.69571045576407 40.0 37.5 41.0 33.0 41.0 40-41 37.50893655049151 40.0 37.0 41.0 32.5 41.0 42-43 37.25062962060281 40.0 36.0 41.0 31.5 41.0 44-45 36.968843935331876 40.0 35.0 41.0 30.5 41.0 46-47 36.74953286213339 40.0 35.0 41.0 30.0 41.0 48-49 36.50040620684052 39.0 35.0 41.0 30.0 41.0 50-51 35.19164838735884 38.0 34.0 40.0 28.0 40.5 52-53 35.48586400194979 38.0 34.5 40.0 28.5 40.5 54-55 35.958607522950686 38.0 35.0 41.0 29.0 41.0 56-57 35.819359818019336 37.5 35.0 41.0 29.0 41.0 58-59 35.648021772686654 37.0 35.0 41.0 28.5 41.0 60-61 35.486067105370054 36.5 35.0 41.0 28.0 41.0 62-63 35.25964741246243 36.0 35.0 40.5 27.5 41.0 64-65 35.05536599236331 35.5 34.5 40.0 27.5 41.0 66-67 34.858436916077665 35.0 34.0 40.0 27.0 41.0 68-69 34.563733853278094 35.0 34.0 39.5 26.0 41.0 70-71 34.356933950767726 35.0 34.0 39.0 26.0 41.0 72-73 34.125152327565196 35.0 34.0 39.0 26.0 41.0 74-75 33.84791615890811 35.0 34.0 38.5 26.0 40.5 76-77 33.50259972377935 35.0 33.0 37.0 25.0 39.5 78-79 33.27467706556179 35.0 33.0 37.0 25.0 39.0 80-81 33.00881468843936 35.0 33.0 36.0 24.0 39.0 82-83 32.71342107401089 35.0 33.0 36.0 24.0 38.0 84-85 32.469940693801284 35.0 33.0 35.5 24.0 37.0 86-87 32.21642700463076 35.0 33.0 35.0 23.5 37.0 88-89 32.06275895686083 35.0 33.0 35.0 24.0 36.0 90-91 31.861239743277274 35.0 33.0 35.0 23.0 36.0 92-93 31.64481273864652 35.0 32.0 35.0 23.0 36.0 94-95 31.57376716223901 35.0 32.0 35.0 22.0 35.5 96-97 31.340320090990332 35.0 31.5 35.0 20.0 35.0 98-99 31.191526525306685 35.0 31.0 35.0 20.0 35.0 100-101 29.739458932488425 34.0 28.0 35.0 15.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 5.0 9 6.0 10 19.0 11 50.0 12 66.0 13 89.0 14 46.0 15 56.0 16 40.0 17 27.0 18 49.0 19 40.0 20 55.0 21 39.0 22 48.0 23 61.0 24 78.0 25 66.0 26 65.0 27 89.0 28 113.0 29 123.0 30 162.0 31 180.0 32 296.0 33 396.0 34 638.0 35 1158.0 36 1948.0 37 2137.0 38 2969.0 39 1175.0 40 18.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 44.118125610152944 19.720143182557763 10.592255125284739 25.569476082004556 2 18.977983589243642 20.082866195466732 34.86067105370054 26.07847916158908 3 19.99350069055163 23.308148509220892 27.50020310342026 29.198147696807215 4 15.04590137297912 16.662604598261435 34.324478024209924 33.967016004549514 5 17.255666585425296 34.8931676009424 31.318547404338286 16.532618409294013 6 32.48842310504509 33.642050532130966 17.88122511983102 15.988301242992934 7 28.190754732309692 29.726216589487365 22.18701762937688 19.89601104882606 8 25.97286538305305 33.317085059712404 20.37533512064343 20.33471443659111 9 25.940368835811196 14.322853196847834 20.115362742708587 39.621415224632386 10-11 27.483954829799334 23.438134698188318 26.379072223576244 22.698838248436104 12-13 26.74872044845235 21.602079779023477 26.289706718661144 25.359493053863027 14-15 25.413399423069112 22.760329906959736 22.97160037378621 28.854670296184942 16-17 24.968504896980534 25.594343073109275 24.493030438493115 24.944121591417076 18-19 24.892337693995287 24.85577313723897 25.86739254083042 24.38449662793532 20-21 26.1072734660707 23.917106867127185 24.66070702966274 25.314912637139376 22-23 25.488682082334297 24.66777746169789 24.736863494127686 25.106676961840122 24-25 25.213293247745185 24.632323068172585 24.356057528235965 25.79832615584627 26-27 24.997968965797384 25.55041026890893 24.287106994881793 25.164513770411894 28-29 24.957348281745066 24.957348281745066 24.44958973109107 25.6357137054188 30-31 25.570720610935087 24.920789666097978 24.096189779835893 25.412299943131046 32-33 25.497603379640914 24.3642862945812 24.67300349337883 25.46510683239906 34-35 25.38386546429442 24.319603542123648 24.977658623771223 25.31887236981071 36-37 25.70592776175192 24.14577662211027 24.466745215942794 25.681550400195018 38-39 24.7430637364423 24.799935004265343 25.068042409716863 25.3889588495755 40-41 25.268118297042573 23.805654858628532 25.381865453363666 25.544361390965225 42-43 25.80225851003331 24.44552766268584 24.453651799496303 25.29856202778455 44-45 25.654046148846277 24.252518687032822 24.735944101397465 25.35749106272343 46-47 25.595093021366477 24.417093183849218 24.27898285807133 25.708830936712975 48-49 25.432610285157203 24.242424242424242 24.534893167600945 25.790072304817613 50-51 24.96953448696076 24.82736209277764 24.835486229588106 25.367617190673492 52-53 25.790072304817613 24.209927695182387 24.242424242424242 25.757575757575758 54-55 25.64383784222926 24.478024209927696 24.04744495897311 25.83069298886993 56-57 24.70143797221545 24.79486554553579 24.453651799496303 26.05004468275246 58-59 25.492585821653464 24.200690635791183 24.9197643713183 25.38695917123705 60-61 25.06805346767968 24.21890870678097 24.21890870678097 26.49412911875838 62-63 25.211279050869496 24.63838777831952 24.38647814074435 25.763855030066633 64-65 25.558715969118246 23.91304347826087 24.38033319788704 26.147907354733846 66-67 25.559663592410516 24.01576402714013 24.14171372851745 26.282858651931907 68-69 25.0385896498497 24.25867251604517 25.07514826549679 25.627589568608332 70-71 25.257941343732227 24.46177593630677 24.205865626777154 26.07441709318385 72-73 24.81923795596718 24.473962141522463 24.888293118856122 25.81850678365424 74-75 24.997968965797384 24.534893167600945 24.38053456820213 26.086603298399545 76-77 25.78194816800715 24.453651799496303 24.311479405313186 25.45292062718336 78-79 25.70383912248629 23.53443022547227 24.822262847856997 25.939467804184442 80-81 25.638003901170354 23.89873211963589 24.195383615084527 26.26788036410923 82-83 26.050556774770385 23.323579614728114 24.689100219458666 25.936763391042835 84-85 25.724269635528827 24.1355491446914 24.452480598106536 25.687700621673237 86-87 24.84252448490267 24.781566220994026 24.671841345958466 25.70406794814484 88-89 25.445902571811647 23.828870921870557 24.401738918457724 26.323487587860072 90-91 25.28231375416362 23.482817450645868 24.689251766999757 26.545617028190755 92-93 24.957348281745066 23.79965878625396 24.981720692176456 26.261272239824518 94-95 25.936306767405963 23.657486392070844 24.352100089365507 26.05410675115769 96-97 25.249817206921765 23.5762450239662 24.664879356568363 26.509058412543666 98-99 25.948492972621658 23.259403688358113 24.664879356568363 26.127223982451863 100-101 26.163097801795942 23.379789525009144 24.115233025882734 26.341879647312176 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.5 9 0.5 10 0.0 11 0.5 12 1.5 13 1.5 14 1.0 15 1.0 16 1.0 17 0.5 18 2.5 19 4.0 20 3.0 21 5.5 22 11.5 23 15.0 24 17.0 25 31.5 26 41.5 27 50.0 28 70.0 29 86.5 30 113.0 31 148.0 32 187.5 33 220.0 34 256.5 35 264.0 36 273.5 37 293.0 38 300.5 39 315.0 40 331.0 41 343.5 42 305.0 43 283.0 44 297.5 45 284.5 46 269.5 47 256.5 48 249.5 49 260.5 50 263.5 51 259.5 52 259.0 53 265.5 54 257.0 55 276.5 56 299.0 57 294.0 58 304.5 59 323.0 60 328.0 61 325.5 62 323.5 63 295.0 64 282.5 65 286.5 66 260.5 67 235.5 68 213.5 69 180.0 70 164.0 71 155.0 72 157.0 73 160.0 74 122.0 75 87.0 76 71.5 77 60.0 78 49.5 79 39.0 80 34.5 81 24.0 82 15.5 83 15.0 84 9.0 85 3.0 86 2.0 87 3.0 88 2.5 89 0.5 90 1.0 91 1.5 92 1.0 93 0.5 94 0.5 95 0.5 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.1381103257778861 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.02031034202615972 16-17 0.044682752457551385 18-19 0.016248273620927775 20-21 0.03249654724185555 22-23 0.044682752457551385 24-25 0.016248273620927775 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.02031034202615972 38-39 0.004062068405231944 40-41 0.008124136810463888 42-43 0.0 44-45 0.008124136810463888 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.012186205215695833 60-61 0.02031034202615972 62-63 0.024372410431391666 64-65 0.03249654724185555 66-67 0.02031034202615972 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.012186205215695833 80-81 0.04062068405231944 82-83 0.04874482086278333 84-85 0.028434478836623606 86-87 0.044682752457551385 88-89 0.02031034202615972 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.028434478836623606 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 12309.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 96.87220732797141 #Duplication Level Percentage of deduplicated Percentage of total 1 96.8970144246897 93.86627670809976 2 2.9855753102985574 5.784385409050288 3 0.10902381751090237 0.31684133560809163 4 0.008386447500838645 0.03249654724185555 5 0.0 0.0 6 0.0 0.0 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 0.0 0.0 20-21 0.0 0.0 0.0 0.0 0.0 22-23 0.0 0.0 0.0 0.0 0.0 24-25 0.0 0.0 0.0 0.0 0.0 26-27 0.0 0.0 0.0 0.0 0.0 28-29 0.0 0.0 0.0 0.0 0.0 30-31 0.0 0.0 0.0 0.0 0.0 32-33 0.0 0.0 0.0 0.012186205215695831 0.0 34-35 0.0 0.0 0.0 0.0649930944837111 0.0 36-37 0.0 0.0 0.0 0.10967584694126249 0.0 38-39 0.0 0.0 0.0 0.1665448046145097 0.0 40-41 0.0 0.0 0.0 0.3330896092290194 0.0 42-43 0.0 0.0 0.0 0.4752620034121374 0.0 44-45 0.0 0.0 0.0 0.6336826712161833 0.0 46-47 0.0 0.0 0.0 0.7880412706149972 0.0 48-49 0.0 0.0 0.0 0.9952067592818263 0.0 50-51 0.0 0.0 0.0 1.1373791534649444 0.0 52-53 0.0 0.0 0.0 1.2998618896742222 0.0 54-55 0.0 0.0 0.0 1.5354618571776748 0.0 56-57 0.0 0.0 0.0 1.8116825087334472 0.0 58-59 0.0 0.0 0.0 2.0472824762368997 0.0 60-61 0.0 0.0 0.0 2.388496222276383 0.0 62-63 0.0 0.0 0.0 2.640344463400764 0.0 64-65 0.0 0.0 0.0 2.977496141035015 0.0 66-67 0.0 0.0 0.0 3.3146478186692665 0.0 68-69 0.0 0.0 0.0 3.631489154277358 0.0 70-71 0.0 0.0 0.0 3.9767649687220734 0.0 72-73 0.0 0.0 0.0 4.297668372735396 0.0 74-75 0.0 0.0 0.0 4.683564871232432 0.0 76-77 0.0 0.0 0.0 5.093833780160858 0.0 78-79 0.0 0.0 0.0 5.532537167925907 0.0 80-81 0.0 0.0 0.0 6.019985376553741 0.0 82-83 0.0 0.0 0.0 6.572426679665286 0.0 84-85 0.0 0.0 0.0 7.063936956698351 0.0 86-87 0.0 0.0 0.0 7.510764481273865 0.0 88-89 0.0 0.0 0.0 8.063205784385408 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTGGAA 20 5.2865077E-4 47.497967 22-23 >>END_MODULE