##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224499_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12309 Sequences flagged as poor quality 0 Sequence length 101 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.15184011698757 34.0 33.0 34.0 31.0 34.0 2 33.28596961572833 34.0 34.0 34.0 31.0 34.0 3 33.379640913152976 34.0 34.0 34.0 31.0 34.0 4 36.58737509139654 37.0 37.0 37.0 35.0 37.0 5 36.62425867251604 37.0 37.0 37.0 35.0 37.0 6 36.64984970346901 37.0 37.0 37.0 35.0 37.0 7 36.62198391420912 37.0 37.0 37.0 35.0 37.0 8 36.59931757250792 37.0 37.0 37.0 35.0 37.0 9 38.46697538386547 39.0 39.0 39.0 37.0 39.0 10-11 38.49809082784954 39.0 39.0 39.0 37.0 39.0 12-13 38.513567308473476 39.0 39.0 39.0 37.0 39.0 14-15 40.13676984320416 41.0 40.0 41.0 38.0 41.0 16-17 40.13977577382403 41.0 40.0 41.0 38.0 41.0 18-19 40.07998212689902 41.0 40.0 41.0 38.0 41.0 20-21 40.07234543829718 41.0 40.0 41.0 38.0 41.0 22-23 39.96551303923958 41.0 40.0 41.0 38.0 41.0 24-25 39.93378828499472 41.0 40.0 41.0 38.0 41.0 26-27 39.86440815663336 41.0 40.0 41.0 38.0 41.0 28-29 39.784466650418395 41.0 40.0 41.0 38.0 41.0 30-31 39.705703144040946 41.0 40.0 41.0 37.0 41.0 32-33 39.59505240068243 41.0 40.0 41.0 37.0 41.0 34-35 39.452961247867414 41.0 39.0 41.0 36.0 41.0 36-37 39.297221545210824 41.0 39.0 41.0 35.0 41.0 38-39 39.121293362580225 41.0 39.0 41.0 35.0 41.0 40-41 38.86826712161833 40.5 38.0 41.0 35.0 41.0 42-43 38.69530424892355 40.0 37.5 41.0 35.0 41.0 44-45 38.37403525875376 40.0 36.5 41.0 35.0 41.0 46-47 38.06860833536437 40.0 35.5 41.0 34.5 41.0 48-49 37.969006418068076 40.0 35.0 41.0 34.0 41.0 50-51 37.76565927370217 39.5 35.0 41.0 34.0 41.0 52-53 37.53469006418068 39.0 35.0 41.0 33.5 41.0 54-55 37.35474043382891 39.0 35.0 41.0 33.0 41.0 56-57 37.144934600698676 38.5 35.0 41.0 33.0 41.0 58-59 36.909740840035745 37.5 35.0 41.0 33.0 41.0 60-61 36.67479080347713 37.0 35.0 41.0 33.0 41.0 62-63 36.503818344300925 36.5 35.0 41.0 33.0 41.0 64-65 36.30055244130311 36.0 35.0 40.0 33.0 41.0 66-67 36.00312779267203 35.5 35.0 40.0 32.0 41.0 68-69 35.847388090015436 35.0 35.0 39.5 32.0 41.0 70-71 35.588187505077585 35.0 35.0 39.0 32.0 41.0 72-73 35.33954829799334 35.0 35.0 39.0 31.0 41.0 74-75 35.0533349581607 35.0 35.0 38.0 31.0 40.5 76-77 33.07640750670241 34.5 32.0 35.5 27.5 38.5 78-79 34.53789909822081 35.0 34.0 37.0 31.0 39.0 80-81 34.50410268908928 35.0 35.0 36.0 31.0 39.0 82-83 34.30270533755788 35.0 35.0 36.0 31.0 38.0 84-85 34.13071736128036 35.0 34.0 36.0 31.0 37.0 86-87 33.88020960272971 35.0 34.0 35.0 31.0 37.0 88-89 33.71650824599887 35.0 34.0 35.0 31.0 36.5 90-91 33.6042732959623 35.0 34.0 35.0 30.0 36.0 92-93 33.48744820862784 35.0 34.0 35.0 30.0 36.0 94-95 33.35868064018199 35.0 34.0 35.0 30.0 36.0 96-97 33.27163051425786 35.0 34.0 35.0 30.0 35.5 98-99 33.15078397920221 35.0 34.0 35.0 29.0 35.0 100-101 32.02416930701113 34.5 32.5 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 4.0 17 2.0 18 2.0 19 8.0 20 18.0 21 19.0 22 25.0 23 31.0 24 32.0 25 38.0 26 52.0 27 59.0 28 77.0 29 78.0 30 112.0 31 154.0 32 180.0 33 267.0 34 498.0 35 1076.0 36 2366.0 37 2501.0 38 3295.0 39 1394.0 40 20.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 45.1052373959863 18.534834393865232 10.899004731603851 25.460923478544622 2 18.831749126655293 19.416686977008695 35.673084734746936 26.07847916158908 3 19.44918352425055 23.072548541717442 28.28824437403526 29.190023559996753 4 14.712811763750103 17.255666585425296 34.18636769843204 33.84515395239256 5 16.613859777398652 32.72402307254854 33.983264278170445 16.678852871882363 6 33.585181574457714 33.57705743764725 17.523763100170605 15.31399788772443 7 29.409375253879276 28.43447883662361 22.081403850840847 20.074742058656266 8 26.435941181249493 32.41530587375092 20.58656267771549 20.5621902672841 9 25.63977577382403 14.200991144690878 20.45657648874807 39.70265659273702 10-11 26.651230806726783 23.42188642456739 27.053375578844747 22.87350718986108 12-13 26.419692907628566 22.17076935575595 26.509058412543666 24.900479324071817 14-15 24.640506946136973 22.824762368998293 23.092858883743602 29.441871801121135 16-17 25.46916890080429 25.980989519863513 24.25867251604517 24.291169063287025 18-19 25.168575838817127 25.083272402307255 25.31887236981071 24.429279389064913 20-21 25.314810301405476 24.61613453570558 24.388658705012592 25.680396457876352 22-23 25.84392899215989 25.177722711947027 24.539952065645693 24.43839623024739 24-25 25.509789584856605 24.079941506214965 24.888293118856122 25.521975790072304 26-27 24.82330002437241 25.209196522869444 24.831424161182873 25.13607929157527 28-29 25.456982695588593 24.478024209927696 25.160451702006664 24.90454139247705 30-31 25.582906816150786 24.583637988463725 24.408969047038752 25.424486148346737 32-33 24.90454139247705 24.965472418555528 24.786741408725323 25.343244780242095 34-35 25.11576894954911 24.733934519457307 24.77861727191486 25.37167925907872 36-37 25.640817321363286 24.702441402282975 24.288093593857905 25.368647682495837 38-39 25.257941343732227 24.888293118856122 24.798927613941018 25.05483792347063 40-41 25.71695507352344 24.209927695182387 24.498334551953853 25.57478267934032 42-43 24.88423105045089 24.473962141522463 25.103582744333412 25.53822406369323 44-45 25.254946572949255 24.722707512290253 24.787713809775322 25.23463210498517 46-47 25.293711126468555 24.52945241676491 25.440058538964998 24.736777917801536 48-49 25.11983101795434 24.29929320009749 25.002031034202616 25.57884474774555 50-51 25.13607929157527 24.595824193679423 24.90860346088228 25.359493053863027 52-53 25.099520675928183 24.67706556178406 24.798927613941018 25.424486148346737 54-55 25.29449995937932 24.551141441221873 24.421155252254447 25.733203347144368 56-57 24.938050940407035 24.978673274566358 24.873055205752124 25.210220579274484 58-59 26.0330746414205 24.111169802121 24.769412051521677 25.086343504936814 60-61 25.331112375071097 23.67758186397985 24.729828552856098 26.261477208092955 62-63 25.245755138516536 24.486148346738158 25.123893086359573 25.144203428385737 64-65 25.46916890080429 23.937769112031845 24.413031115443985 26.18003087171988 66-67 24.88016898204566 24.06775530099927 24.807051750751484 26.24502396620359 68-69 24.88016898204566 23.986513932894628 25.002031034202616 26.131286050857096 70-71 24.786741408725323 24.372410431391664 24.937037939718902 25.903810220164107 72-73 25.176699975627592 23.685920870907466 25.01421723941831 26.123161914046634 74-75 24.78267934032009 24.063693232594037 24.587700056868957 26.56592737021691 76-77 24.8476724348038 24.13681046388821 24.502396620359086 26.5131204809489 78-79 25.270127548947922 23.884962222763832 24.270858721260865 26.57405150702738 80-81 25.01421723941831 23.897148427979527 24.494272483548624 26.594361849053538 82-83 25.12795515476481 23.86058981233244 24.82736209277764 26.184092940125115 84-85 24.900479324071817 24.059631164188804 24.388658705012592 26.651230806726783 86-87 24.900479324071817 24.388658705012592 24.315541473718415 26.395320497197172 88-89 25.03046551303924 23.5762450239662 24.82330002437241 26.569989438622148 90-91 25.091396539117717 23.998700138110326 24.522706962385246 26.38719636038671 92-93 24.86798277682996 23.917458770005688 24.9492241449346 26.265334308229747 94-95 24.98578276058169 23.978389796084166 24.534893167600945 26.5009342757332 96-97 24.961410350150295 24.039320822162647 24.392720773417825 26.606548054269236 98-99 24.872044845235195 23.84027947030628 24.563327646437568 26.724348038020963 100-101 24.70731707317073 24.020325203252032 24.520325203252032 26.7520325203252 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.5 9 0.5 10 0.0 11 0.0 12 0.5 13 0.5 14 0.0 15 1.0 16 1.5 17 0.5 18 2.0 19 4.5 20 5.5 21 4.5 22 8.5 23 15.0 24 25.5 25 33.5 26 38.5 27 49.0 28 65.5 29 92.5 30 110.5 31 135.5 32 187.5 33 218.0 34 233.5 35 268.0 36 300.5 37 313.0 38 309.0 39 319.5 40 321.0 41 318.0 42 327.5 43 311.5 44 288.5 45 274.0 46 264.0 47 256.0 48 265.5 49 278.5 50 267.0 51 268.5 52 261.0 53 257.5 54 270.5 55 273.0 56 296.0 57 315.5 58 317.0 59 323.5 60 332.5 61 321.5 62 320.0 63 303.5 64 273.0 65 269.5 66 240.5 67 223.5 68 224.0 69 193.5 70 175.5 71 156.0 72 143.5 73 135.5 74 116.0 75 99.0 76 72.5 77 54.0 78 39.5 79 31.5 80 26.5 81 23.0 82 15.5 83 6.5 84 3.5 85 4.0 86 3.5 87 1.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.41433097733365826 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.004062068405231944 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.004062068405231944 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.02031034202615972 46-47 0.07717929969940694 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.004062068405231944 58-59 0.028434478836623606 60-61 0.016248273620927775 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.073117231294175 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 12309.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 96.54724185555284 #Duplication Level Percentage of deduplicated Percentage of total 1 96.60047122181084 93.26509058412543 2 3.2648939750925616 6.304330164919977 3 0.11780545270952542 0.3412137460394833 4 0.00841467519353753 0.03249654724185555 5 0.0 0.0 6 0.0 0.0 7 0.00841467519353753 0.05686895767324721 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 0.0 0.0 20-21 0.0 0.0 0.0 0.0 0.0 22-23 0.0 0.0 0.0 0.0 0.0 24-25 0.0 0.0 0.0 0.0 0.0 26-27 0.0 0.0 0.0 0.0 0.0 28-29 0.0 0.0 0.0 0.004062068405231944 0.0 30-31 0.0 0.0 0.0 0.008124136810463888 0.0 32-33 0.0 0.0 0.0 0.020310342026159722 0.0 34-35 0.0 0.0 0.0 0.073117231294175 0.0 36-37 0.0 0.0 0.0 0.11779998375172637 0.0 38-39 0.0 0.0 0.0 0.18279307823543747 0.0 40-41 0.0 0.0 0.0 0.34933788284994716 0.0 42-43 0.0 0.0 0.0 0.507758550653993 0.0 44-45 0.0 0.0 0.0 0.6783654236737346 0.0 46-47 0.0 0.0 0.0 0.8367860914777805 0.0 48-49 0.0 0.0 0.0 1.0439515801446095 0.0 50-51 0.0 0.0 0.0 1.1861239743277276 0.0 52-53 0.0 0.0 0.0 1.3567308473474693 0.0 54-55 0.0 0.0 0.0 1.5882687464456902 0.0 56-57 0.0 0.0 0.0 1.8563652611909984 0.0 58-59 0.0 0.0 0.0 2.091965228694451 0.0 60-61 0.0 0.0 0.0 2.4250548379234704 0.0 62-63 0.0 0.0 0.0 2.676903079047851 0.0 64-65 0.0 0.0 0.0 3.0221788934925664 0.0 66-67 0.0 0.0 0.0 3.3715167763425136 0.0 68-69 0.0 0.0 0.0 3.6842960435453733 0.0 70-71 0.0 0.0 0.0 4.0295718579900885 0.0 72-73 0.0 0.0 0.0 4.358599398813876 0.0 74-75 0.0 0.0 0.0 4.764806239337071 0.0 76-77 0.0 0.0 0.0 5.187261353481192 0.0 78-79 0.0 0.0 0.0 5.62190267284101 0.0 80-81 0.0 0.0 0.0 6.109350881468844 0.0 82-83 0.0 0.0 0.0 6.657730116175156 0.0 84-85 0.0 0.0 0.0 7.153302461613453 0.0 86-87 0.0 0.0 0.0 7.6204403282151265 0.0 88-89 0.0 0.0 0.0 8.193191973352832 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GAGGTGT 20 0.0020282376 71.22561 6 >>END_MODULE